Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 305-765 |
| Cow position: | chr29:9096548-9097014 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 198, 314 |
| Conread position: | 439-726 |
| Cow position: | chr29:28584314-28584596 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 136, 18 |
| Conread position: | 446-781 |
| Cow position: | chr29:30516169-30515838 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 97 |
| Conread position: | 447-755 |
| Cow position: | chr29:43551747-43551441 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 448-660 |
| Cow position: | chr29:39372501-39372715 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 36 |
| Conread position: | 448-747 |
| Cow position: | chr29:24083482-24083182 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 167 |
| Conread position: | 448-748 |
| Cow position: | chr29:27505503-27505805 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 109 |
| Conread position: | 448-750 |
| Cow position: | chr29:12292671-12292375 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 448-759 |
| Cow position: | chr29:32953896-32954193 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 117, 15 |
| Conread position: | 448-760 |
| Cow position: | chr29:13046091-13046402 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 448-762 |
| Cow position: | chr29:22121984-22122295 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 448-769 |
| Cow position: | chr29:33143667-33143985 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 95 |
| Conread position: | 448-769 |
| Cow position: | chr29:44598221-44597899 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 448-774 |
| Cow position: | chr29:5029284-5029607 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 15, 121 |
| Conread position: | 448-782 |
| Cow position: | chr29:34957162-34957493 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 448-785 |
| Cow position: | chr29:12968206-12967866 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 449-802 |
| Cow position: | chr29:24266099-24266445 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 15, 129 |
| Conread position: | 450-729 |
| Cow position: | chr29:18400233-18400514 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 31 |
| Conread position: | 450-740 |
| Cow position: | chr29:9801310-9801595 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 156 |
| Conread position: | 450-779 |
| Cow position: | chr29:16939611-16939933 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 451-752 |
| Cow position: | chr29:6467051-6466752 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 454-773 |
| Cow position: | chr29:16364798-16365119 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 128, 78 |
| Conread position: | 455-710 |
| Cow position: | chr29:31050441-31050695 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 23, 41 |
| Conread position: | 455-768 |
| Cow position: | chr29:33101870-33102190 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 456-778 |
| Cow position: | chr29:9511364-9511041 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 161 |
| Conread position: | 457-757 |
| Cow position: | chr29:40143433-40143142 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 119, 61 |
| Conread position: | 457-797 |
| Cow position: | chr29:19635843-19635507 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 458-781 |
| Cow position: | chr29:29001094-29000770 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 43, 99 |
| Conread position: | 463-740 |
| Cow position: | chr29:22560347-22560072 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 463-758 |
| Cow position: | chr29:36296526-36296238 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 113, 46 |
| Conread position: | 468-785 |
| Cow position: | chr29:2564324-2564635 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 148 |
| Conread position: | 473-781 |
| Cow position: | chr29:33123407-33123705 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 100, 136 |
| Conread position: | 474-753 |
| Cow position: | chr29:30263768-30263487 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 141 |
| Conread position: | 474-756 |
| Cow position: | chr29:20615570-20615842 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 181, 77 |
| Conread position: | 477-769 |
| Cow position: | chr29:36603316-36603598 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 109, 138 |
| Conread position: | 479-755 |
| Cow position: | chr29:9463069-9462797 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 479-802 |
| Cow position: | chr29:9507139-9506819 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 486-741 |
| Cow position: | chr29:25348463-25348705 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 169, 12 |
| Conread position: | 486-756 |
| Cow position: | chr29:37068610-37068862 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 486-781 |
| Cow position: | chr29:5636602-5636894 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 169, 94 |
| Conread position: | 487-774 |
| Cow position: | chr29:36688175-36688471 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 79, 8 |
| Conread position: | 488-755 |
| Cow position: | chr29:9316267-9316001 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 85, 31 |
| Conread position: | 488-769 |
| Cow position: | chr29:40137475-40137196 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 147, 88 |
| Conread position: | 489-760 |
| Cow position: | chr29:19564875-19564601 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 74, 129 |
| Conread position: | 491-761 |
| Cow position: | chr29:4537712-4537984 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 494-781 |
| Cow position: | chr29:23541613-23541325 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 82, 120 |
| Conread position: | 495-774 |
| Cow position: | chr29:3692271-3692548 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 502-754 |
| Cow position: | chr29:20971134-20970888 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 82 |
| Conread position: | 502-771 |
| Cow position: | chr29:36936432-36936690 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 509-739 |
| Cow position: | chr29:12883853-12884079 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 151, 43 |
| Conread position: | 520-774 |
| Cow position: | chr29:31836111-31836356 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 139, 45 |
| Conread position: | 527-757 |
| Cow position: | chr29:20085896-20085668 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 128, 46 |
| Conread position: | 538-754 |
| Cow position: | chr29:36517921-36518134 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 76 |
| Conread position: | 553-748 |
| Cow position: | chr29:25771684-25771488 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 553-780 |
| Cow position: | chr29:12015382-12015608 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 98 |
| Conread position: | 556-797 |
| Cow position: | chr29:37675515-37675273 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 17, 62 |
| Conread position: | 576-755 |
| Cow position: | chr29:39656440-39656261 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 585-798 |
| Cow position: | chr29:34427200-34426990 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 592-795 |
| Cow position: | chr29:31377141-31377340 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 593-796 |
| Cow position: | chr29:19616500-19616299 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 193, 20 |
| Conread position: | 608-749 |
| Cow position: | chr29:7341521-7341662 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 86 |
Show alignments to all cow chromosomes.