Cow genome map

Conread name: Ss1.1-Pig4-TMW8048L06.5

Conread position: 1-804
Cow position: chr6:66974531-66975351 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 642
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 18

Conread position: 434-760
Cow position: chr6:24614151-24613826 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 82, 15

Conread position: 445-770
Cow position: chr6:18146701-18146373 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 224
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 18, 47

Conread position: 448-681
Cow position: chr6:19841979-19841745 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 17, 70

Conread position: 448-723
Cow position: chr6:47631651-47631927 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 181
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 16, 116

Conread position: 448-724
Cow position: chr6:15991151-15990881 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 182
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 206, 15

Conread position: 448-742
Cow position: chr6:6999044-6999336 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 113

Conread position: 448-753
Cow position: chr6:31654465-31654164 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 215
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 17, 122

Conread position: 448-754
Cow position: chr6:17887238-17886931 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 19, 31

Conread position: 448-756
Cow position: chr6:24044759-24044451 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 218
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 78, 163

Conread position: 448-769
Cow position: chr6:48107675-48107992 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 15, 22

Conread position: 448-769
Cow position: chr6:51370748-51371064 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 14, 68

Conread position: 448-774
Cow position: chr6:29772059-29772381 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 226
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 17, 7

Conread position: 448-780
Cow position: chr6:67764470-67764137 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 214
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 17, 160

Conread position: 448-792
Cow position: chr6:16430777-16430430 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 15

Conread position: 448-796
Cow position: chr6:47661353-47661708 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 16, 35

Conread position: 449-726
Cow position: chr6:60685116-60685390 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 15, 29

Conread position: 449-780
Cow position: chr6:19429111-19429440 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 15, 33

Conread position: 450-753
Cow position: chr6:22746303-22746602 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 217
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 5, 14

Conread position: 450-756
Cow position: chr6:1908699-1908390 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 15, 165

Conread position: 450-760
Cow position: chr6:35186977-35187281 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 208
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 14, 83

Conread position: 450-774
Cow position: chr6:33176953-33176637 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 224
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 15, 22

Conread position: 452-769
Cow position: chr6:66514899-66515211 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 205
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 27, 84

Conread position: 454-740
Cow position: chr6:50988211-50987917 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 200
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 122, 9

Conread position: 454-753
Cow position: chr6:60936023-60936320 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 16

Conread position: 454-760
Cow position: chr6:17284384-17284092 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 203, 9

Conread position: 454-760
Cow position: chr6:22995328-22995031 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 204
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 13, 118

Conread position: 455-750
Cow position: chr6:37393063-37392770 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 117

Conread position: 455-755
Cow position: chr6:14806101-14806393 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 198
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 19, 8

Conread position: 455-756
Cow position: chr6:51049580-51049883 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 9, 65

Conread position: 455-760
Cow position: chr6:23008401-23008100 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 198
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 116

Conread position: 455-774
Cow position: chr6:3187352-3187671 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 205
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 9, 154

Conread position: 456-755
Cow position: chr6:58731480-58731775 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 90, 152

Conread position: 457-771
Cow position: chr6:67173283-67172972 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 206
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 70, 42

Conread position: 458-747
Cow position: chr6:13938878-13938596 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 192
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 196, 10

Conread position: 463-762
Cow position: chr6:38936739-38936434 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 195, 104

Conread position: 463-787
Cow position: chr6:27138117-27137795 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 210
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 69, 18

Conread position: 465-742
Cow position: chr6:6749732-6750007 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 59, 69

Conread position: 466-729
Cow position: chr6:7008820-7008555 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 107, 35

Conread position: 466-757
Cow position: chr6:20029404-20029118 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 198
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 190, 37

Conread position: 467-781
Cow position: chr6:20269536-20269219 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 206
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 109, 64

Conread position: 468-755
Cow position: chr6:37735450-37735736 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 74

Conread position: 471-781
Cow position: chr6:57397408-57397723 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 56, 48

Conread position: 473-761
Cow position: chr6:35590773-35591049 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 135, 37

Conread position: 473-769
Cow position: chr6:47457496-47457788 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 82, 138

Conread position: 477-780
Cow position: chr6:36603842-36604141 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 96, 138

Conread position: 477-781
Cow position: chr6:34924423-34924132 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 182, 36

Conread position: 479-724
Cow position: chr6:47441094-47440852 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 8

Conread position: 485-674
Cow position: chr6:55387878-55388068 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 91, 34

Conread position: 486-756
Cow position: chr6:6192207-6192474 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 11, 17

Conread position: 486-756
Cow position: chr6:17489696-17489427 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 87, 48

Conread position: 486-777
Cow position: chr6:47610381-47610666 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 168, 65

Conread position: 489-750
Cow position: chr6:41352668-41352408 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 170
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 84, 125

Conread position: 489-752
Cow position: chr6:39096195-39095936 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 120

Conread position: 489-756
Cow position: chr6:43587103-43587369 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 173
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 39, 30

Conread position: 489-779
Cow position: chr6:23401296-23401017 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 192
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 154, 86

Conread position: 489-785
Cow position: chr6:21694384-21694680 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 127

Conread position: 489-788
Cow position: chr6:38778288-38777986 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 195
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 82, 125

Conread position: 491-747
Cow position: chr6:62845400-62845659 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 89, 126

Conread position: 491-753
Cow position: chr6:1733828-1733567 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 175
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 125

Conread position: 494-721
Cow position: chr6:35274777-35274549 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 79, 100

Conread position: 497-769
Cow position: chr6:41216088-41216361 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 186
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 76, 119

Conread position: 498-781
Cow position: chr6:28052843-28052568 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 136, 81

Conread position: 498-782
Cow position: chr6:8777774-8778059 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 75, 28

Conread position: 501-767
Cow position: chr6:18572627-18572878 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 182
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 72, 50

Conread position: 502-757
Cow position: chr6:33469687-33469938 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 172
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 49

Conread position: 507-736
Cow position: chr6:32497654-32497881 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 153, 60

Conread position: 513-755
Cow position: chr6:47640091-47639848 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 60, 101

Conread position: 513-760
Cow position: chr6:7128155-7127914 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 184
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 38, 0

Conread position: 519-788
Cow position: chr6:31427632-31427897 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 54, 32

Conread position: 526-797
Cow position: chr6:65829301-65829038 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 129, 41

Conread position: 536-709
Cow position: chr6:55301141-55300966 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 78

Conread position: 536-769
Cow position: chr6:31436997-31437226 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 167
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 119, 47

Conread position: 540-756
Cow position: chr6:30928854-30928637 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 74

Conread position: 541-803
Cow position: chr6:61547751-61547490 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 30, 73

Conread position: 574-784
Cow position: chr6:15386355-15386145 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 81, 39

Conread position: 575-797
Cow position: chr6:49968510-49968733 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 161
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 85, 38

Conread position: 585-756
Cow position: chr6:59450874-59450708 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 28, 0

Conread position: 585-780
Cow position: chr6:53480426-53480224 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 28

Conread position: 588-760
Cow position: chr6:19575267-19575095 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 67, 27

Conread position: 588-774
Cow position: chr6:59113751-59113935 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 67, 25

Conread position: 588-780
Cow position: chr6:35205820-35205630 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 70, 25

Conread position: 592-760
Cow position: chr6:16315662-16315828 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 65, 21

Conread position: 593-774
Cow position: chr6:16278093-16278274 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 62, 20

Conread position: 603-790
Cow position: chr6:53540608-53540799 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 608-766
Cow position: chr6:60386348-60386505 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 116

Conread position: 608-781
Cow position: chr6:20837926-20838098 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 120
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 622-769
Cow position: chr6:31530839-31530987 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 33, 0

Show alignments to all cow chromosomes.