Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 418-710 |
| Cow position: | chr9:39583284-39582986 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 29, 205 |
| Conread position: | 422-712 |
| Cow position: | chr9:49619815-49620101 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 106, 17 |
| Conread position: | 445-760 |
| Cow position: | chr9:49963582-49963270 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 75 |
| Conread position: | 448-677 |
| Cow position: | chr9:20126390-20126165 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 448-677 |
| Cow position: | chr9:53641123-53640892 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 448-685 |
| Cow position: | chr9:35747717-35747479 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 14, 167 |
| Conread position: | 448-689 |
| Cow position: | chr9:47079239-47079482 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 169 |
| Conread position: | 448-717 |
| Cow position: | chr9:44854685-44854944 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 448-722 |
| Cow position: | chr9:52685921-52686193 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 448-746 |
| Cow position: | chr9:59411635-59411930 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 448-749 |
| Cow position: | chr9:20508325-20508628 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 17, 231 |
| Conread position: | 448-756 |
| Cow position: | chr9:47168968-47169276 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 448-757 |
| Cow position: | chr9:59737311-59737610 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 448-760 |
| Cow position: | chr9:42930854-42930559 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 54 |
| Conread position: | 448-767 |
| Cow position: | chr9:54660306-54660627 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 170 |
| Conread position: | 448-767 |
| Cow position: | chr9:55264414-55264735 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 172 |
| Conread position: | 448-769 |
| Cow position: | chr9:23603843-23604164 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 18, 165 |
| Conread position: | 448-769 |
| Cow position: | chr9:46237529-46237200 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 16, 196 |
| Conread position: | 448-774 |
| Cow position: | chr9:22471505-22471186 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 448-779 |
| Cow position: | chr9:36706502-36706838 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 146 |
| Conread position: | 448-781 |
| Cow position: | chr9:20817440-20817755 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 448-781 |
| Cow position: | chr9:32582479-32582812 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 16, 215 |
| Conread position: | 448-782 |
| Cow position: | chr9:16010659-16010323 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 232 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 448-785 |
| Cow position: | chr9:9004130-9003814 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 74, 15 |
| Conread position: | 449-715 |
| Cow position: | chr9:57472886-57473154 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 161 |
| Conread position: | 449-724 |
| Cow position: | chr9:56040237-56039974 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 449-754 |
| Cow position: | chr9:47939664-47939963 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 207, 14 |
| Conread position: | 449-755 |
| Cow position: | chr9:58245980-58246288 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 449-789 |
| Cow position: | chr9:49512102-49511761 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 16, 61 |
| Conread position: | 450-667 |
| Cow position: | chr9:55364151-55363935 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 450-781 |
| Cow position: | chr9:20178975-20178639 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 168 |
| Conread position: | 454-725 |
| Cow position: | chr9:19885917-19886189 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 55 |
| Conread position: | 454-769 |
| Cow position: | chr9:20899946-20899639 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 33 |
| Conread position: | 454-804 |
| Cow position: | chr9:32293911-32294258 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 90 |
| Conread position: | 455-721 |
| Cow position: | chr9:22758531-22758266 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 455-757 |
| Cow position: | chr9:28816854-28816556 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 455-780 |
| Cow position: | chr9:56767003-56766683 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 456-784 |
| Cow position: | chr9:33259395-33259085 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 117, 17 |
| Conread position: | 457-750 |
| Cow position: | chr9:29373357-29373649 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 458-785 |
| Cow position: | chr9:21689303-21688975 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 115, 156 |
| Conread position: | 462-777 |
| Cow position: | chr9:41027684-41027982 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 199, 48 |
| Conread position: | 463-729 |
| Cow position: | chr9:20098334-20098067 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 133, 115 |
| Conread position: | 463-774 |
| Cow position: | chr9:49118694-49118996 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 463-785 |
| Cow position: | chr9:34131950-34131633 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 87, 77 |
| Conread position: | 464-775 |
| Cow position: | chr9:17059822-17059509 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 465-698 |
| Cow position: | chr9:11438698-11438464 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 108, 25 |
| Conread position: | 468-767 |
| Cow position: | chr9:12389148-12388854 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 215, 68 |
| Conread position: | 468-803 |
| Cow position: | chr9:34802726-34803056 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 105, 5 |
| Conread position: | 469-786 |
| Cow position: | chr9:23837137-23837455 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 471-769 |
| Cow position: | chr9:27368965-27368666 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 67, 19 |
| Conread position: | 474-714 |
| Cow position: | chr9:19069118-19069356 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 132 |
| Conread position: | 474-755 |
| Cow position: | chr9:13291143-13290869 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 62 |
| Conread position: | 479-709 |
| Cow position: | chr9:54111673-54111447 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 94, 13 |
| Conread position: | 479-774 |
| Cow position: | chr9:19593924-19594216 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 39 |
| Conread position: | 487-769 |
| Cow position: | chr9:24962882-24963170 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 193 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 41, 124 |
| Conread position: | 487-784 |
| Cow position: | chr9:20170411-20170119 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 104 |
| Conread position: | 489-774 |
| Cow position: | chr9:60818520-60818236 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 165, 125 |
| Conread position: | 489-785 |
| Cow position: | chr9:42703568-42703270 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 87, 125 |
| Conread position: | 489-785 |
| Cow position: | chr9:46358224-46358520 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 490-779 |
| Cow position: | chr9:17355052-17354761 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 148, 80 |
| Conread position: | 490-783 |
| Cow position: | chr9:25011144-25010853 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 83, 125 |
| Conread position: | 494-747 |
| Cow position: | chr9:19535583-19535332 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 494-792 |
| Cow position: | chr9:23428859-23429149 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 494-804 |
| Cow position: | chr9:32408745-32408435 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 79, 108 |
| Conread position: | 500-722 |
| Cow position: | chr9:33373494-33373707 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 500-724 |
| Cow position: | chr9:45471773-45471555 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 67 |
| Conread position: | 501-741 |
| Cow position: | chr9:16090709-16090466 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 26, 18 |
| Conread position: | 507-732 |
| Cow position: | chr9:29853646-29853423 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 150, 101 |
| Conread position: | 520-756 |
| Cow position: | chr9:28698765-28699001 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 94 |
| Conread position: | 537-797 |
| Cow position: | chr9:5868094-5867841 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 558-769 |
| Cow position: | chr9:39199940-39200153 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 56 |
| Conread position: | 585-785 |
| Cow position: | chr9:43194313-43194511 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 588-749 |
| Cow position: | chr9:19068310-19068470 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 588-797 |
| Cow position: | chr9:9458543-9458341 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 597-751 |
| Cow position: | chr9:4344645-4344494 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 607-785 |
| Cow position: | chr9:34952402-34952222 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 59, 127 |
| Conread position: | 608-755 |
| Cow position: | chr9:37701156-37701304 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 608-756 |
| Cow position: | chr9:20638509-20638362 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 609-784 |
| Cow position: | chr9:7619945-7620118 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 610-756 |
| Cow position: | chr9:44853439-44853588 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 655-790 |
| Cow position: | chr9:52872016-52872151 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.