Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 361-808 |
| Cow position: | chr12:7163851-7163414 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 370-601 |
| Cow position: | chr12:14679702-14679930 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 374-605 |
| Cow position: | chr12:46932530-46932300 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 175 |
| Conread position: | 375-833 |
| Cow position: | chr12:21120130-21120583 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 376-625 |
| Cow position: | chr12:45460188-45459939 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 87, 160 |
| Conread position: | 379-567 |
| Cow position: | chr12:14164578-14164771 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 177 |
| Conread position: | 379-630 |
| Cow position: | chr12:32697044-32696799 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 190, 20 |
| Conread position: | 380-625 |
| Cow position: | chr12:33250382-33250134 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 181 |
| Conread position: | 380-833 |
| Cow position: | chr12:9616269-9616741 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 163 |
| Conread position: | 381-569 |
| Cow position: | chr12:29772629-29772815 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 164 |
| Conread position: | 381-615 |
| Cow position: | chr12:6973827-6973593 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 79, 115 |
| Conread position: | 381-630 |
| Cow position: | chr12:10156400-10156651 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 75, 204 |
| Conread position: | 381-859 |
| Cow position: | chr12:42335988-42335510 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 149 |
| Conread position: | 383-594 |
| Cow position: | chr12:13947760-13947975 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 158 |
| Conread position: | 383-634 |
| Cow position: | chr12:21136093-21136352 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 383-808 |
| Cow position: | chr12:41918500-41918073 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 293 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 75, 189 |
| Conread position: | 383-810 |
| Cow position: | chr12:19216013-19215578 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 383-832 |
| Cow position: | chr12:4180081-4180568 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 172 |
| Conread position: | 384-527 |
| Cow position: | chr12:11553621-11553472 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 144 |
| Conread position: | 384-645 |
| Cow position: | chr12:45730959-45730697 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 79, 144 |
| Conread position: | 384-752 |
| Cow position: | chr12:9526002-9526395 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 175 |
| Conread position: | 386-768 |
| Cow position: | chr12:5602352-5601948 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 160 |
| Conread position: | 386-834 |
| Cow position: | chr12:2764181-2763729 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 15 |
| Conread position: | 387-596 |
| Cow position: | chr12:43484579-43484369 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 387-634 |
| Cow position: | chr12:39956761-39957011 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 388-569 |
| Cow position: | chr12:30237375-30237192 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 165 |
| Conread position: | 390-567 |
| Cow position: | chr12:9578374-9578554 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 397-827 |
| Cow position: | chr12:26186822-26186388 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 123 |
| Conread position: | 408-837 |
| Cow position: | chr12:47868726-47868311 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 297 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 6, 175 |
| Conread position: | 416-634 |
| Cow position: | chr12:29466471-29466248 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 44, 132 |
| Conread position: | 432-634 |
| Cow position: | chr12:13219258-13219056 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 31, 93 |
| Conread position: | 444-861 |
| Cow position: | chr12:26720690-26721111 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 445-836 |
| Cow position: | chr12:41873917-41874320 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 449-632 |
| Cow position: | chr12:35772564-35772745 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 476-835 |
| Cow position: | chr12:47604269-47603925 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 510-751 |
| Cow position: | chr12:38503654-38503897 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 510-836 |
| Cow position: | chr12:3131144-3130808 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 533-834 |
| Cow position: | chr12:37148695-37148388 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 48 |
| Conread position: | 557-834 |
| Cow position: | chr12:33250131-33249851 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 572-819 |
| Cow position: | chr12:14926045-14926291 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 50 |
| Conread position: | 580-808 |
| Cow position: | chr12:29773169-29773399 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 92, 40 |
| Conread position: | 580-833 |
| Cow position: | chr12:21965943-21966204 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 67 |
| Conread position: | 593-864 |
| Cow position: | chr12:6462280-6462000 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 257 |
| Conread position: | 608-862 |
| Cow position: | chr12:937150-936890 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 58, 196 |
| Conread position: | 631-803 |
| Cow position: | chr12:39187785-39187598 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 631-812 |
| Cow position: | chr12:45193329-45193140 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 631-833 |
| Cow position: | chr12:10678795-10678590 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 631-834 |
| Cow position: | chr12:38409041-38408842 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 86, 27 |
| Conread position: | 631-835 |
| Cow position: | chr12:22015222-22015422 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 631-848 |
| Cow position: | chr12:16513497-16513722 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 635-833 |
| Cow position: | chr12:34248214-34248004 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 151 |
| Conread position: | 638-863 |
| Cow position: | chr12:14490391-14490613 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 81, 30 |
| Conread position: | 641-834 |
| Cow position: | chr12:11831842-11831638 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 142 |
| Conread position: | 643-862 |
| Cow position: | chr12:30236081-30235864 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 75, 13 |
| Conread position: | 646-832 |
| Cow position: | chr12:13216981-13216794 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 13 |
| Conread position: | 674-842 |
| Cow position: | chr12:8118499-8118667 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 685-839 |
| Cow position: | chr12:21136362-21136522 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 686-862 |
| Cow position: | chr12:45730697-45730522 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 139 |
| Conread position: | 710-864 |
| Cow position: | chr12:13952169-13952320 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 129 |
Show alignments to all cow chromosomes.