Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 370-630 |
| Cow position: | chr13:4074023-4074278 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 372-819 |
| Cow position: | chr13:8735312-8734855 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 12, 221 |
| Conread position: | 373-623 |
| Cow position: | chr13:14824705-14824959 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 173 |
| Conread position: | 374-579 |
| Cow position: | chr13:34080592-34080386 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 84, 178 |
| Conread position: | 376-631 |
| Cow position: | chr13:50531735-50531996 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 87, 221 |
| Conread position: | 377-634 |
| Cow position: | chr13:46515299-46515547 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 63 |
| Conread position: | 377-726 |
| Cow position: | chr13:26484584-26484949 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 178 |
| Conread position: | 377-808 |
| Cow position: | chr13:34082207-34082619 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 86, 123 |
| Conread position: | 378-628 |
| Cow position: | chr13:4184263-4184512 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 105 |
| Conread position: | 379-556 |
| Cow position: | chr13:20350210-20350029 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 379-659 |
| Cow position: | chr13:16136538-16136255 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 24, 162 |
| Conread position: | 380-565 |
| Cow position: | chr13:29725986-29726172 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 77, 172 |
| Conread position: | 380-588 |
| Cow position: | chr13:47295378-47295585 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 163 |
| Conread position: | 380-633 |
| Cow position: | chr13:1165444-1165697 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 80, 170 |
| Conread position: | 380-862 |
| Cow position: | chr13:39745827-39745350 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 17 |
| Conread position: | 381-545 |
| Cow position: | chr13:16653384-16653545 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 381-633 |
| Cow position: | chr13:49623772-49624012 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 188, 16 |
| Conread position: | 381-761 |
| Cow position: | chr13:2885605-2885230 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 381-764 |
| Cow position: | chr13:6640068-6639665 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 204 |
| Conread position: | 381-862 |
| Cow position: | chr13:15371670-15372153 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 158 |
| Conread position: | 383-549 |
| Cow position: | chr13:42341805-42341635 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 383-630 |
| Cow position: | chr13:56916372-56916126 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 190 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 383-632 |
| Cow position: | chr13:505199-505456 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 76, 203 |
| Conread position: | 383-632 |
| Cow position: | chr13:42780273-42780524 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 383-634 |
| Cow position: | chr13:21042069-21042329 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 82, 159 |
| Conread position: | 383-736 |
| Cow position: | chr13:45279256-45278898 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 383-813 |
| Cow position: | chr13:42598920-42599361 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 172 |
| Conread position: | 383-833 |
| Cow position: | chr13:20091951-20092399 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 383-834 |
| Cow position: | chr13:35694570-35694121 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 384-569 |
| Cow position: | chr13:18850481-18850669 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 159 |
| Conread position: | 384-595 |
| Cow position: | chr13:48964138-48964348 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 73, 115 |
| Conread position: | 384-833 |
| Cow position: | chr13:55817614-55818053 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 384-844 |
| Cow position: | chr13:55459142-55458710 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 57 |
| Conread position: | 390-834 |
| Cow position: | chr13:25921255-25921700 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 392-607 |
| Cow position: | chr13:26210462-26210681 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 68, 153 |
| Conread position: | 395-861 |
| Cow position: | chr13:55778351-55778808 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 125 |
| Conread position: | 396-839 |
| Cow position: | chr13:15788775-15788355 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 310 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 69, 103 |
| Conread position: | 414-771 |
| Cow position: | chr13:11263406-11263049 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 130 |
| Conread position: | 414-834 |
| Cow position: | chr13:45230115-45230551 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 433-835 |
| Cow position: | chr13:21292261-21292661 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 461-715 |
| Cow position: | chr13:32788452-32788696 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 49 |
| Conread position: | 487-739 |
| Cow position: | chr13:57415911-57416166 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 149, 44 |
| Conread position: | 496-807 |
| Cow position: | chr13:5909424-5909101 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 501-836 |
| Cow position: | chr13:12507911-12508257 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 11 |
| Conread position: | 526-834 |
| Cow position: | chr13:21279523-21279203 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 548-833 |
| Cow position: | chr13:41327890-41327600 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 549-860 |
| Cow position: | chr13:55599412-55599100 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 560-808 |
| Cow position: | chr13:23798676-23798936 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 94, 14 |
| Conread position: | 577-833 |
| Cow position: | chr13:25978446-25978708 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 579-833 |
| Cow position: | chr13:6187305-6187574 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 579-833 |
| Cow position: | chr13:9392210-9391959 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 81 |
| Conread position: | 579-836 |
| Cow position: | chr13:20330975-20330715 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 82 |
| Conread position: | 582-831 |
| Cow position: | chr13:15933957-15933697 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 8 |
| Conread position: | 585-808 |
| Cow position: | chr13:15656953-15656722 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 585-808 |
| Cow position: | chr13:40508308-40508545 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 157 |
| Conread position: | 611-856 |
| Cow position: | chr13:14069238-14069488 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 635-810 |
| Cow position: | chr13:42782372-42782552 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 169 |
| Conread position: | 635-862 |
| Cow position: | chr13:11703551-11703788 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 24, 167 |
| Conread position: | 635-864 |
| Cow position: | chr13:56297682-56297918 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 641-809 |
| Cow position: | chr13:47571777-47571601 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 641-862 |
| Cow position: | chr13:27382561-27382798 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 641-862 |
| Cow position: | chr13:31806674-31806890 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 644-833 |
| Cow position: | chr13:56901754-56901948 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 645-833 |
| Cow position: | chr13:16135972-16135774 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 666-863 |
| Cow position: | chr13:42368420-42368221 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 125 |
| Conread position: | 672-862 |
| Cow position: | chr13:18909904-18910089 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 101 |
| Conread position: | 674-862 |
| Cow position: | chr13:26289994-26289807 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 681-836 |
| Cow position: | chr13:44385512-44385668 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 137 |
| Conread position: | 684-808 |
| Cow position: | chr13:505468-505595 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 685-862 |
| Cow position: | chr13:4074293-4074468 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 154 |
Show alignments to all cow chromosomes.