Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 371-836 |
| Cow position: | chr14:48215621-48216094 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 182 |
| Conread position: | 374-843 |
| Cow position: | chr14:5404200-5404667 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 111 |
| Conread position: | 375-556 |
| Cow position: | chr14:19004559-19004742 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 82 |
| Conread position: | 375-631 |
| Cow position: | chr14:22312975-22313227 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 125 |
| Conread position: | 378-632 |
| Cow position: | chr14:41317789-41318036 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 118 |
| Conread position: | 380-529 |
| Cow position: | chr14:41725521-41725370 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 380-569 |
| Cow position: | chr14:17780286-17780099 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 380-595 |
| Cow position: | chr14:34216198-34216414 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 83, 195 |
| Conread position: | 380-634 |
| Cow position: | chr14:22239442-22239701 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 380-832 |
| Cow position: | chr14:35032682-35033144 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 289 |
| Conread position: | 380-833 |
| Cow position: | chr14:35423803-35424276 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 131 |
| Conread position: | 380-862 |
| Cow position: | chr14:4527638-4527155 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 81 |
| Conread position: | 381-832 |
| Cow position: | chr14:11562719-11562265 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 381-834 |
| Cow position: | chr14:13589528-13589092 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 382-808 |
| Cow position: | chr14:11491803-11491388 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 383-527 |
| Cow position: | chr14:37013899-37014046 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 383-545 |
| Cow position: | chr14:33241115-33241280 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 383-566 |
| Cow position: | chr14:4337768-4337947 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 383-566 |
| Cow position: | chr14:16334963-16334778 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 137 |
| Conread position: | 383-570 |
| Cow position: | chr14:5265503-5265683 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 383-588 |
| Cow position: | chr14:25704487-25704277 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 383-601 |
| Cow position: | chr14:13831749-13831961 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 383-607 |
| Cow position: | chr14:12784839-12785059 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 129 |
| Conread position: | 383-615 |
| Cow position: | chr14:32755041-32754815 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 49 |
| Conread position: | 383-625 |
| Cow position: | chr14:6909332-6909579 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 82, 165 |
| Conread position: | 383-630 |
| Cow position: | chr14:38067064-38066823 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 78, 49 |
| Conread position: | 383-631 |
| Cow position: | chr14:35364876-35365127 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 13, 183 |
| Conread position: | 383-635 |
| Cow position: | chr14:38892018-38892274 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 194 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 165 |
| Conread position: | 383-833 |
| Cow position: | chr14:30502189-30502634 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 156 |
| Conread position: | 384-558 |
| Cow position: | chr14:36791743-36791916 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 384-836 |
| Cow position: | chr14:39303034-39302579 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 384-862 |
| Cow position: | chr14:35271276-35270806 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 414-699 |
| Cow position: | chr14:15881280-15881563 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 40, 185 |
| Conread position: | 414-862 |
| Cow position: | chr14:5411907-5412344 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 71 |
| Conread position: | 417-862 |
| Cow position: | chr14:40429060-40429508 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 294 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 432-634 |
| Cow position: | chr14:45749172-45748976 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 465-863 |
| Cow position: | chr14:26590606-26591002 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 115, 35 |
| Conread position: | 509-824 |
| Cow position: | chr14:7235964-7235631 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 43 |
| Conread position: | 549-862 |
| Cow position: | chr14:19005071-19005364 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 556-833 |
| Cow position: | chr14:24686994-24686715 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 13, 26 |
| Conread position: | 568-862 |
| Cow position: | chr14:5265899-5266199 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 12 |
| Conread position: | 573-864 |
| Cow position: | chr14:31219244-31219553 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 7, 284 |
| Conread position: | 579-834 |
| Cow position: | chr14:39000071-38999810 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 177 |
| Conread position: | 579-862 |
| Cow position: | chr14:36792076-36792354 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 592-802 |
| Cow position: | chr14:39501239-39501461 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 72, 192 |
| Conread position: | 622-859 |
| Cow position: | chr14:38014231-38013994 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 631-776 |
| Cow position: | chr14:17660529-17660387 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 140, 27 |
| Conread position: | 631-850 |
| Cow position: | chr14:45747072-45746845 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 640-808 |
| Cow position: | chr14:2850041-2849862 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 640-834 |
| Cow position: | chr14:13499026-13498821 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 644-833 |
| Cow position: | chr14:20597514-20597707 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 644-859 |
| Cow position: | chr14:33481777-33482004 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 96 |
| Conread position: | 663-834 |
| Cow position: | chr14:48713566-48713747 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 109, 42 |
| Conread position: | 681-836 |
| Cow position: | chr14:32754792-32754637 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 92, 107 |
Show alignments to all cow chromosomes.