Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 373-863 |
| Cow position: | chr15:10829441-10828950 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 30 |
| Conread position: | 378-836 |
| Cow position: | chr15:47444104-47443654 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 379-601 |
| Cow position: | chr15:48870191-48870413 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 172 |
| Conread position: | 380-634 |
| Cow position: | chr15:2135916-2136160 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 196, 94 |
| Conread position: | 380-668 |
| Cow position: | chr15:47771315-47771038 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 178, 65 |
| Conread position: | 380-808 |
| Cow position: | chr15:14373158-14373611 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 380-836 |
| Cow position: | chr15:9741253-9740799 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 75 |
| Conread position: | 381-631 |
| Cow position: | chr15:35219923-35219675 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 168 |
| Conread position: | 383-567 |
| Cow position: | chr15:34515314-34515127 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 383-594 |
| Cow position: | chr15:19926961-19926749 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 91 |
| Conread position: | 383-606 |
| Cow position: | chr15:26444494-26444712 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 129 |
| Conread position: | 383-631 |
| Cow position: | chr15:1816068-1816319 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 87, 125 |
| Conread position: | 383-634 |
| Cow position: | chr15:547685-547435 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 82 |
| Conread position: | 383-833 |
| Cow position: | chr15:50201962-50202397 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 23 |
| Conread position: | 383-834 |
| Cow position: | chr15:42885982-42885561 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 285, 54 |
| Conread position: | 384-569 |
| Cow position: | chr15:34715377-34715562 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 81, 160 |
| Conread position: | 384-632 |
| Cow position: | chr15:19782846-19783084 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 76, 110 |
| Conread position: | 384-633 |
| Cow position: | chr15:41192918-41192673 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 384-634 |
| Cow position: | chr15:21367588-21367828 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 185, 78 |
| Conread position: | 384-634 |
| Cow position: | chr15:31409088-31408843 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 384-634 |
| Cow position: | chr15:38540255-38540504 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 85, 175 |
| Conread position: | 385-621 |
| Cow position: | chr15:40347984-40347749 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 155 |
| Conread position: | 386-623 |
| Cow position: | chr15:11649979-11649738 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 386-641 |
| Cow position: | chr15:50252218-50251956 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 170 |
| Conread position: | 389-654 |
| Cow position: | chr15:36362922-36363176 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 180, 48 |
| Conread position: | 389-834 |
| Cow position: | chr15:42479595-42479157 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 311 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 71, 161 |
| Conread position: | 396-834 |
| Cow position: | chr15:40300515-40300963 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 119 |
| Conread position: | 398-635 |
| Cow position: | chr15:33154652-33154422 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 413-715 |
| Cow position: | chr15:39035703-39036000 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 439-634 |
| Cow position: | chr15:18664985-18664789 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 112 |
| Conread position: | 482-631 |
| Cow position: | chr15:29600839-29600986 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 70 |
| Conread position: | 485-704 |
| Cow position: | chr15:23776714-23776931 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 65 |
| Conread position: | 550-862 |
| Cow position: | chr15:26066841-26066515 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 306 |
| Conread position: | 557-860 |
| Cow position: | chr15:28715760-28716070 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 234 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 635-821 |
| Cow position: | chr15:11649169-11648975 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 635-833 |
| Cow position: | chr15:545575-545363 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 638-862 |
| Cow position: | chr15:30042432-30042662 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 113 |
| Conread position: | 641-864 |
| Cow position: | chr15:27872310-27872088 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 27, 178 |
| Conread position: | 644-839 |
| Cow position: | chr15:46718523-46718718 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 20, 15 |
| Conread position: | 644-847 |
| Cow position: | chr15:27108855-27108648 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 644-862 |
| Cow position: | chr15:19785507-19785736 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 663-808 |
| Cow position: | chr15:38543800-38543948 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 664-810 |
| Cow position: | chr15:23776911-23777060 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 676-862 |
| Cow position: | chr15:23900955-23901129 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 687-810 |
| Cow position: | chr15:27395193-27395319 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
Show alignments to all cow chromosomes.