Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 1-864 |
| Cow position: | chr16:50816980-50816145 (view UCSC Genome Browser custom track) |
| Alignm length: | 871 |
| Alignm identity: | 681 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 327 |
| Conread position: | 367-862 |
| Cow position: | chr16:13411270-13411759 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 371-836 |
| Cow position: | chr16:38331931-38332406 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 372-545 |
| Cow position: | chr16:2538029-2537856 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 373-569 |
| Cow position: | chr16:40664753-40664953 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 87, 123 |
| Conread position: | 374-836 |
| Cow position: | chr16:55087561-55087088 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 179 |
| Conread position: | 375-751 |
| Cow position: | chr16:35159924-35159567 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 90, 7 |
| Conread position: | 380-560 |
| Cow position: | chr16:47237679-47237496 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 83, 174 |
| Conread position: | 380-569 |
| Cow position: | chr16:50928477-50928667 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 165 |
| Conread position: | 381-631 |
| Cow position: | chr16:24890578-24890325 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 162 |
| Conread position: | 381-810 |
| Cow position: | chr16:12729403-12728968 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 167 |
| Conread position: | 383-545 |
| Cow position: | chr16:13316510-13316666 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 77, 39 |
| Conread position: | 383-607 |
| Cow position: | chr16:22607105-22606877 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 77, 171 |
| Conread position: | 383-634 |
| Cow position: | chr16:52927599-52927856 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 80, 170 |
| Conread position: | 383-810 |
| Cow position: | chr16:598923-598511 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 383-819 |
| Cow position: | chr16:11588705-11588256 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 64 |
| Conread position: | 383-864 |
| Cow position: | chr16:33149558-33150029 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 78 |
| Conread position: | 384-607 |
| Cow position: | chr16:13816349-13816128 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 157 |
| Conread position: | 384-607 |
| Cow position: | chr16:28424218-28423982 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 79, 207 |
| Conread position: | 384-632 |
| Cow position: | chr16:11336288-11336038 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 79, 165 |
| Conread position: | 384-634 |
| Cow position: | chr16:11354706-11354459 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 384-862 |
| Cow position: | chr16:51805696-51805232 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 385-607 |
| Cow position: | chr16:19311484-19311259 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 161 |
| Conread position: | 386-862 |
| Cow position: | chr16:13350821-13351288 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 65 |
| Conread position: | 387-632 |
| Cow position: | chr16:23639272-23639036 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 388-624 |
| Cow position: | chr16:22770131-22769891 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 389-862 |
| Cow position: | chr16:34866983-34866512 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 396-634 |
| Cow position: | chr16:42338062-42338291 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 85 |
| Conread position: | 397-586 |
| Cow position: | chr16:51984996-51984807 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 63, 108 |
| Conread position: | 414-835 |
| Cow position: | chr16:31732001-31732420 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 414-862 |
| Cow position: | chr16:44753646-44754091 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 442-634 |
| Cow position: | chr16:39398695-39398491 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 148 |
| Conread position: | 442-833 |
| Cow position: | chr16:11045012-11044620 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 285 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 444-836 |
| Cow position: | chr16:37576358-37576748 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 43 |
| Conread position: | 464-632 |
| Cow position: | chr16:27807569-27807739 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 482-629 |
| Cow position: | chr16:42287998-42287854 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 485-655 |
| Cow position: | chr16:56704819-56704649 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 494-815 |
| Cow position: | chr16:55146237-55146554 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 76, 53 |
| Conread position: | 500-862 |
| Cow position: | chr16:3114787-3115152 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 501-855 |
| Cow position: | chr16:53269969-53270321 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 507-808 |
| Cow position: | chr16:15995800-15996096 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 152, 31 |
| Conread position: | 543-839 |
| Cow position: | chr16:54925384-54925685 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 560-831 |
| Cow position: | chr16:40665180-40665460 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 562-808 |
| Cow position: | chr16:2703355-2703103 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 564-810 |
| Cow position: | chr16:23007491-23007731 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 572-862 |
| Cow position: | chr16:47217277-47216995 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 580-833 |
| Cow position: | chr16:34265290-34265024 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 25 |
| Conread position: | 585-806 |
| Cow position: | chr16:43838895-43838660 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 6 |
| Conread position: | 630-862 |
| Cow position: | chr16:27980890-27981121 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 57 |
| Conread position: | 631-833 |
| Cow position: | chr16:22766392-22766182 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 631-862 |
| Cow position: | chr16:23873221-23873459 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 215 |
| Conread position: | 631-862 |
| Cow position: | chr16:31774262-31774487 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 39, 137 |
| Conread position: | 637-781 |
| Cow position: | chr16:51983627-51983470 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 638-834 |
| Cow position: | chr16:38119626-38119831 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 641-819 |
| Cow position: | chr16:18764729-18764547 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 641-834 |
| Cow position: | chr16:23636634-23636446 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 641-862 |
| Cow position: | chr16:23410449-23410228 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 27, 76 |
| Conread position: | 645-863 |
| Cow position: | chr16:42341273-42341494 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 23, 200 |
| Conread position: | 646-808 |
| Cow position: | chr16:47484732-47484577 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 663-834 |
| Cow position: | chr16:13317377-13317551 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 674-834 |
| Cow position: | chr16:30039099-30039261 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 44, 141 |
| Conread position: | 684-864 |
| Cow position: | chr16:11354449-11354270 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 34, 157 |
| Conread position: | 685-808 |
| Cow position: | chr16:36914411-36914536 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 66 |
| Conread position: | 685-836 |
| Cow position: | chr16:11043923-11044079 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 685-863 |
| Cow position: | chr16:42287842-42287665 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 700-862 |
| Cow position: | chr16:27810190-27810349 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 75, 136 |
Show alignments to all cow chromosomes.