Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 377-633 |
| Cow position: | chr17:21625738-21625998 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 70, 83 |
| Conread position: | 380-544 |
| Cow position: | chr17:11901925-11902095 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 380-545 |
| Cow position: | chr17:29659233-29659395 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 380-625 |
| Cow position: | chr17:18837690-18837937 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 83, 108 |
| Conread position: | 383-601 |
| Cow position: | chr17:33981792-33982015 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 80, 200 |
| Conread position: | 383-856 |
| Cow position: | chr17:6873288-6873755 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 168 |
| Conread position: | 383-859 |
| Cow position: | chr17:20638276-20638749 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 338 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 47, 117 |
| Conread position: | 384-631 |
| Cow position: | chr17:20009864-20010111 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 74, 165 |
| Conread position: | 384-833 |
| Cow position: | chr17:10884402-10883965 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 384-861 |
| Cow position: | chr17:44206013-44205523 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 76, 220 |
| Conread position: | 384-862 |
| Cow position: | chr17:14295860-14295378 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 116 |
| Conread position: | 385-588 |
| Cow position: | chr17:20474929-20474725 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 111 |
| Conread position: | 386-808 |
| Cow position: | chr17:43936679-43937098 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 42 |
| Conread position: | 388-615 |
| Cow position: | chr17:13390353-13390118 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 144 |
| Conread position: | 388-775 |
| Cow position: | chr17:4807706-4808114 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 112 |
| Conread position: | 395-588 |
| Cow position: | chr17:21896356-21896168 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 124, 153 |
| Conread position: | 413-569 |
| Cow position: | chr17:25568184-25568028 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 87 |
| Conread position: | 414-632 |
| Cow position: | chr17:1653576-1653356 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 137 |
| Conread position: | 417-815 |
| Cow position: | chr17:27989422-27989816 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 75 |
| Conread position: | 436-836 |
| Cow position: | chr17:34753613-34753194 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 141 |
| Conread position: | 442-810 |
| Cow position: | chr17:33401895-33402283 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 110 |
| Conread position: | 442-833 |
| Cow position: | chr17:17569031-17568633 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 444-853 |
| Cow position: | chr17:17557929-17558346 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 445-808 |
| Cow position: | chr17:23896491-23896838 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 124, 12 |
| Conread position: | 450-860 |
| Cow position: | chr17:6859655-6859255 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 292 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 486-833 |
| Cow position: | chr17:42356968-42357311 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 505-858 |
| Cow position: | chr17:16887410-16887769 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 517-835 |
| Cow position: | chr17:5763479-5763152 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 59, 297 |
| Conread position: | 549-813 |
| Cow position: | chr17:28523368-28523636 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 580-862 |
| Cow position: | chr17:12654715-12654427 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 49 |
| Conread position: | 611-836 |
| Cow position: | chr17:3278129-3277899 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 170 |
| Conread position: | 622-862 |
| Cow position: | chr17:20012221-20012461 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 641-835 |
| Cow position: | chr17:1651213-1651008 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 641-836 |
| Cow position: | chr17:21896136-21895946 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 76, 117 |
| Conread position: | 641-862 |
| Cow position: | chr17:38379721-38379499 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 643-833 |
| Cow position: | chr17:26387367-26387175 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 644-833 |
| Cow position: | chr17:37984231-37984049 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 644-834 |
| Cow position: | chr17:40672030-40671832 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 644-862 |
| Cow position: | chr17:30495634-30495850 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 650-834 |
| Cow position: | chr17:17086075-17085897 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 669-815 |
| Cow position: | chr17:13387918-13387768 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 673-862 |
| Cow position: | chr17:1223101-1223289 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 678-808 |
| Cow position: | chr17:24096753-24096885 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 719-862 |
| Cow position: | chr17:40689160-40689300 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 119 |
Show alignments to all cow chromosomes.