Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 364-607 |
| Cow position: | chr18:49887247-49887503 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 368-534 |
| Cow position: | chr18:32036511-32036341 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 372-833 |
| Cow position: | chr18:23724194-23724669 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 9 |
| Conread position: | 374-715 |
| Cow position: | chr18:15849289-15849609 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 202, 78 |
| Conread position: | 378-807 |
| Cow position: | chr18:42562146-42562592 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 35 |
| Conread position: | 380-607 |
| Cow position: | chr18:41935042-41934817 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 85, 164 |
| Conread position: | 380-634 |
| Cow position: | chr18:11824745-11824997 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 188, 77 |
| Conread position: | 380-634 |
| Cow position: | chr18:36846700-36846944 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 160 |
| Conread position: | 380-759 |
| Cow position: | chr18:21248605-21248221 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 166 |
| Conread position: | 381-607 |
| Cow position: | chr18:18495273-18495493 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 79, 161 |
| Conread position: | 381-806 |
| Cow position: | chr18:51555466-51555908 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 383-607 |
| Cow position: | chr18:17765383-17765612 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 82, 167 |
| Conread position: | 383-607 |
| Cow position: | chr18:17816315-17816093 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 54 |
| Conread position: | 383-632 |
| Cow position: | chr18:9137935-9138182 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 80, 56 |
| Conread position: | 383-731 |
| Cow position: | chr18:53284208-53284552 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 77, 157 |
| Conread position: | 383-806 |
| Cow position: | chr18:18791964-18792391 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 163 |
| Conread position: | 383-806 |
| Cow position: | chr18:26458833-26458419 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 159 |
| Conread position: | 383-833 |
| Cow position: | chr18:36882967-36882519 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 172 |
| Conread position: | 383-859 |
| Cow position: | chr18:13353804-13354285 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 57 |
| Conread position: | 383-859 |
| Cow position: | chr18:16800796-16800294 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 88, 20 |
| Conread position: | 383-862 |
| Cow position: | chr18:23382416-23381931 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 94 |
| Conread position: | 384-535 |
| Cow position: | chr18:24460621-24460467 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 384-856 |
| Cow position: | chr18:29210936-29211412 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 384-862 |
| Cow position: | chr18:29656941-29657429 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 19 |
| Conread position: | 399-655 |
| Cow position: | chr18:29611714-29611975 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 193 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 61, 185 |
| Conread position: | 414-833 |
| Cow position: | chr18:15860209-15860640 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 141 |
| Conread position: | 436-836 |
| Cow position: | chr18:3995777-3995382 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 437-630 |
| Cow position: | chr18:8031433-8031237 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 442-837 |
| Cow position: | chr18:7661711-7662098 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 443-634 |
| Cow position: | chr18:22855385-22855198 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 444-629 |
| Cow position: | chr18:29784657-29784469 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 444-759 |
| Cow position: | chr18:10636085-10636417 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 459-725 |
| Cow position: | chr18:26509848-26510104 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 88 |
| Conread position: | 464-846 |
| Cow position: | chr18:19304628-19305021 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 169 |
| Conread position: | 466-850 |
| Cow position: | chr18:27232817-27233190 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 485-761 |
| Cow position: | chr18:2492345-2492629 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 506-799 |
| Cow position: | chr18:12808615-12808315 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 152, 36 |
| Conread position: | 509-780 |
| Cow position: | chr18:35461840-35461551 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 521-812 |
| Cow position: | chr18:1579560-1579854 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 542-832 |
| Cow position: | chr18:2969796-2969501 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 550-802 |
| Cow position: | chr18:50838624-50838881 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 556-833 |
| Cow position: | chr18:45740542-45740811 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 26 |
| Conread position: | 557-862 |
| Cow position: | chr18:32035761-32035450 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 585-862 |
| Cow position: | chr18:32255929-32255649 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 81, 31 |
| Conread position: | 591-833 |
| Cow position: | chr18:24460220-24459970 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 592-859 |
| Cow position: | chr18:4000578-4000850 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 42, 253 |
| Conread position: | 593-834 |
| Cow position: | chr18:27519943-27519698 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 610-862 |
| Cow position: | chr18:28965572-28965840 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 149 |
| Conread position: | 618-812 |
| Cow position: | chr18:22747063-22746868 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 51 |
| Conread position: | 632-754 |
| Cow position: | chr18:11826187-11826315 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 635-839 |
| Cow position: | chr18:30022629-30022848 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 171 |
| Conread position: | 639-833 |
| Cow position: | chr18:16250739-16250939 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 640-805 |
| Cow position: | chr18:9139448-9139621 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 641-832 |
| Cow position: | chr18:42573479-42573676 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 641-833 |
| Cow position: | chr18:36851055-36851253 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 77 |
| Conread position: | 649-808 |
| Cow position: | chr18:26319285-26319126 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 69, 10 |
| Conread position: | 654-833 |
| Cow position: | chr18:16196139-16195951 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 14, 173 |
| Conread position: | 664-844 |
| Cow position: | chr18:47930139-47929959 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 10 |
Show alignments to all cow chromosomes.