Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 360-834 |
| Cow position: | chr19:2863371-2863852 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 263 |
| Conread position: | 365-812 |
| Cow position: | chr19:13664190-13663719 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 373-568 |
| Cow position: | chr19:21278300-21278496 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 15 |
| Conread position: | 375-831 |
| Cow position: | chr19:36795117-36795559 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 88, 5 |
| Conread position: | 377-632 |
| Cow position: | chr19:10619410-10619148 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 78, 209 |
| Conread position: | 377-751 |
| Cow position: | chr19:41839000-41839377 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 378-634 |
| Cow position: | chr19:38262482-38262734 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 85, 114 |
| Conread position: | 380-607 |
| Cow position: | chr19:12359504-12359269 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 85, 219 |
| Conread position: | 380-715 |
| Cow position: | chr19:29986128-29986450 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 173 |
| Conread position: | 380-832 |
| Cow position: | chr19:43892709-43893154 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 38 |
| Conread position: | 380-860 |
| Cow position: | chr19:55205607-55205125 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 108 |
| Conread position: | 381-839 |
| Cow position: | chr19:28065643-28066096 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 140 |
| Conread position: | 383-607 |
| Cow position: | chr19:32843604-32843830 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 165 |
| Conread position: | 383-620 |
| Cow position: | chr19:42982332-42982570 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 99 |
| Conread position: | 383-825 |
| Cow position: | chr19:17171170-17170731 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 81 |
| Conread position: | 383-832 |
| Cow position: | chr19:2446820-2446365 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 157 |
| Conread position: | 384-633 |
| Cow position: | chr19:42210463-42210219 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 148 |
| Conread position: | 384-712 |
| Cow position: | chr19:22764399-22764710 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 76, 99 |
| Conread position: | 384-835 |
| Cow position: | chr19:24913110-24912660 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 77 |
| Conread position: | 384-861 |
| Cow position: | chr19:35979946-35980415 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 324 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 76, 53 |
| Conread position: | 385-836 |
| Cow position: | chr19:6950997-6951439 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 316 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 80, 122 |
| Conread position: | 386-632 |
| Cow position: | chr19:45703059-45703296 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 11, 52 |
| Conread position: | 386-808 |
| Cow position: | chr19:25891971-25891551 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 50 |
| Conread position: | 389-558 |
| Cow position: | chr19:36962063-36961892 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 164 |
| Conread position: | 392-548 |
| Cow position: | chr19:7025550-7025710 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 413-634 |
| Cow position: | chr19:4757151-4757383 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 143 |
| Conread position: | 413-819 |
| Cow position: | chr19:13466028-13465620 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 136 |
| Conread position: | 427-634 |
| Cow position: | chr19:15829802-15829604 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 440-620 |
| Cow position: | chr19:40880787-40880964 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 115 |
| Conread position: | 459-791 |
| Cow position: | chr19:20062914-20063235 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 110, 5 |
| Conread position: | 465-836 |
| Cow position: | chr19:5377824-5378194 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 11 |
| Conread position: | 494-750 |
| Cow position: | chr19:56067220-56067481 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 173, 64 |
| Conread position: | 497-860 |
| Cow position: | chr19:36489486-36489840 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 74 |
| Conread position: | 545-833 |
| Cow position: | chr19:16825952-16826256 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 228 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 18, 37 |
| Conread position: | 564-836 |
| Cow position: | chr19:51402540-51402274 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 91, 33 |
| Conread position: | 572-862 |
| Cow position: | chr19:28926545-28926260 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 149, 5 |
| Conread position: | 579-839 |
| Cow position: | chr19:21278669-21278928 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 595-810 |
| Cow position: | chr19:51101408-51101629 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 612-839 |
| Cow position: | chr19:16058641-16058883 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 50, 167 |
| Conread position: | 630-833 |
| Cow position: | chr19:55537802-55537595 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 631-857 |
| Cow position: | chr19:42342891-42343143 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 634-862 |
| Cow position: | chr19:2216217-2216447 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 35, 209 |
| Conread position: | 635-833 |
| Cow position: | chr19:5088136-5088338 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 635-833 |
| Cow position: | chr19:36321199-36321002 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 641-808 |
| Cow position: | chr19:45148714-45148549 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 641-831 |
| Cow position: | chr19:21785149-21784951 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 641-833 |
| Cow position: | chr19:19295316-19295113 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 641-834 |
| Cow position: | chr19:21862086-21862292 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 644-836 |
| Cow position: | chr19:39851256-39851055 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 644-862 |
| Cow position: | chr19:15826524-15826311 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 85, 14 |
| Conread position: | 645-864 |
| Cow position: | chr19:4363877-4363660 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 666-833 |
| Cow position: | chr19:8861964-8862137 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 16, 158 |
| Conread position: | 683-833 |
| Cow position: | chr19:45271623-45271476 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 685-830 |
| Cow position: | chr19:38262744-38262894 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 690-862 |
| Cow position: | chr19:13266929-13266758 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 149 |
Show alignments to all cow chromosomes.