Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 357-836 |
| Cow position: | chr21:40214056-40214528 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 324 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 69, 12 |
| Conread position: | 360-634 |
| Cow position: | chr21:17382273-17382539 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 113 |
| Conread position: | 364-545 |
| Cow position: | chr21:38696280-38696096 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 172 |
| Conread position: | 370-836 |
| Cow position: | chr21:34415677-34416136 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 128 |
| Conread position: | 374-581 |
| Cow position: | chr21:9447096-9446893 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 89, 146 |
| Conread position: | 377-551 |
| Cow position: | chr21:16801698-16801521 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 379-550 |
| Cow position: | chr21:21042281-21042450 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 81, 22 |
| Conread position: | 380-596 |
| Cow position: | chr21:37197503-37197286 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 80, 138 |
| Conread position: | 383-568 |
| Cow position: | chr21:13502025-13501840 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 155 |
| Conread position: | 383-615 |
| Cow position: | chr21:3847066-3846842 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 82, 164 |
| Conread position: | 383-625 |
| Cow position: | chr21:37367806-37367565 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 82, 162 |
| Conread position: | 383-632 |
| Cow position: | chr21:42906301-42906547 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 80, 125 |
| Conread position: | 383-634 |
| Cow position: | chr21:17223951-17223700 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 82, 172 |
| Conread position: | 383-634 |
| Cow position: | chr21:18082603-18082354 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 80, 170 |
| Conread position: | 383-819 |
| Cow position: | chr21:38927061-38926609 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 117 |
| Conread position: | 383-834 |
| Cow position: | chr21:7168786-7169240 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 113 |
| Conread position: | 383-859 |
| Cow position: | chr21:16337241-16336770 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 77, 163 |
| Conread position: | 383-860 |
| Cow position: | chr21:4262096-4261627 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 89 |
| Conread position: | 383-862 |
| Cow position: | chr21:30170841-30171334 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 14 |
| Conread position: | 383-862 |
| Cow position: | chr21:45299416-45298929 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 147 |
| Conread position: | 384-551 |
| Cow position: | chr21:41539677-41539847 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 384-607 |
| Cow position: | chr21:49646974-49647195 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 79, 156 |
| Conread position: | 384-808 |
| Cow position: | chr21:29834130-29834529 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 384-836 |
| Cow position: | chr21:28147936-28148399 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 195 |
| Conread position: | 384-862 |
| Cow position: | chr21:26869323-26869815 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 128 |
| Conread position: | 385-634 |
| Cow position: | chr21:47730865-47730617 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 72 |
| Conread position: | 386-706 |
| Cow position: | chr21:1721359-1721038 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 392-588 |
| Cow position: | chr21:30616117-30616314 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 66, 152 |
| Conread position: | 413-534 |
| Cow position: | chr21:11299790-11299915 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 413-633 |
| Cow position: | chr21:33197162-33196947 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 72 |
| Conread position: | 414-607 |
| Cow position: | chr21:448254-448446 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 95 |
| Conread position: | 414-806 |
| Cow position: | chr21:33974163-33973764 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 141 |
| Conread position: | 417-633 |
| Cow position: | chr21:36953063-36952845 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 417-634 |
| Cow position: | chr21:43038200-43037988 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 128 |
| Conread position: | 426-831 |
| Cow position: | chr21:29868749-29868338 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 442-858 |
| Cow position: | chr21:22743881-22744308 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 461-632 |
| Cow position: | chr21:2750308-2750476 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 115, 67 |
| Conread position: | 483-771 |
| Cow position: | chr21:908170-907889 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 52, 65 |
| Conread position: | 486-833 |
| Cow position: | chr21:45963061-45963431 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 25, 51 |
| Conread position: | 486-843 |
| Cow position: | chr21:10796480-10796111 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 83, 61 |
| Conread position: | 505-834 |
| Cow position: | chr21:43803729-43804057 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 505-862 |
| Cow position: | chr21:24090139-24089778 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 5, 38 |
| Conread position: | 507-862 |
| Cow position: | chr21:34167062-34167406 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 519-808 |
| Cow position: | chr21:10120351-10120658 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 559-860 |
| Cow position: | chr21:41540098-41540409 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 564-834 |
| Cow position: | chr21:9446541-9446262 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 572-836 |
| Cow position: | chr21:18782469-18782739 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 61, 5 |
| Conread position: | 572-862 |
| Cow position: | chr21:11300214-11300511 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 581-798 |
| Cow position: | chr21:8176150-8176378 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 581-848 |
| Cow position: | chr21:6690239-6690510 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 603-862 |
| Cow position: | chr21:45450854-45450588 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 32, 243 |
| Conread position: | 610-862 |
| Cow position: | chr21:37197299-37197047 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 232 |
| Conread position: | 625-829 |
| Cow position: | chr21:36952799-36952586 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 631-769 |
| Cow position: | chr21:17384108-17384254 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 631-834 |
| Cow position: | chr21:42907016-42907234 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 635-808 |
| Cow position: | chr21:37310823-37310652 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 137, 23 |
| Conread position: | 635-836 |
| Cow position: | chr21:18080453-18080243 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 635-836 |
| Cow position: | chr21:32334217-32334017 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 636-808 |
| Cow position: | chr21:33196608-33196422 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 641-853 |
| Cow position: | chr21:3354855-3354646 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 641-860 |
| Cow position: | chr21:8381555-8381776 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 173 |
| Conread position: | 644-810 |
| Cow position: | chr21:12450760-12450596 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 650-839 |
| Cow position: | chr21:34174284-34174083 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 115 |
| Conread position: | 663-824 |
| Cow position: | chr21:30221390-30221551 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 667-828 |
| Cow position: | chr21:3210763-3210927 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 682-835 |
| Cow position: | chr21:13501517-13501363 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 687-836 |
| Cow position: | chr21:47730605-47730453 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.