Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 372-546 |
| Cow position: | chr23:37300869-37301045 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 86, 156 |
| Conread position: | 375-596 |
| Cow position: | chr23:38938407-38938189 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 106 |
| Conread position: | 375-634 |
| Cow position: | chr23:4559010-4558757 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 88, 114 |
| Conread position: | 375-808 |
| Cow position: | chr23:29150130-29149711 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 117 |
| Conread position: | 379-857 |
| Cow position: | chr23:27100297-27100777 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 178 |
| Conread position: | 380-550 |
| Cow position: | chr23:33003344-33003515 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 380-715 |
| Cow position: | chr23:29662723-29663059 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 380-771 |
| Cow position: | chr23:25132991-25133376 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 380-833 |
| Cow position: | chr23:27421910-27421441 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 46 |
| Conread position: | 380-834 |
| Cow position: | chr23:12585981-12586466 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 26 |
| Conread position: | 380-858 |
| Cow position: | chr23:40754248-40754716 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 92, 44 |
| Conread position: | 383-560 |
| Cow position: | chr23:19629656-19629471 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 383-580 |
| Cow position: | chr23:6515625-6515823 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 77, 110 |
| Conread position: | 383-607 |
| Cow position: | chr23:11766388-11766617 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 174 |
| Conread position: | 383-620 |
| Cow position: | chr23:35133642-35133879 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 383-634 |
| Cow position: | chr23:12946039-12946290 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 36, 124 |
| Conread position: | 383-634 |
| Cow position: | chr23:26127681-26127928 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 82, 64 |
| Conread position: | 383-651 |
| Cow position: | chr23:33450788-33450516 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 124, 147 |
| Conread position: | 383-833 |
| Cow position: | chr23:5318440-5317986 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 383-834 |
| Cow position: | chr23:32033472-32033943 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 205 |
| Conread position: | 384-607 |
| Cow position: | chr23:24729562-24729340 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 144, 84 |
| Conread position: | 384-828 |
| Cow position: | chr23:17419330-17418858 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 334 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 384-836 |
| Cow position: | chr23:22985749-22986201 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 174 |
| Conread position: | 384-843 |
| Cow position: | chr23:24255783-24255315 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 120 |
| Conread position: | 385-545 |
| Cow position: | chr23:40263307-40263471 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 385-569 |
| Cow position: | chr23:31071719-31071533 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 78, 168 |
| Conread position: | 385-808 |
| Cow position: | chr23:12148741-12148296 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 182 |
| Conread position: | 386-861 |
| Cow position: | chr23:38354392-38353939 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 165 |
| Conread position: | 390-808 |
| Cow position: | chr23:30680058-30680486 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 63 |
| Conread position: | 391-605 |
| Cow position: | chr23:26683243-26683027 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 72, 57 |
| Conread position: | 397-808 |
| Cow position: | chr23:7563011-7563435 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 196 |
| Conread position: | 413-641 |
| Cow position: | chr23:675820-675593 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 144 |
| Conread position: | 413-819 |
| Cow position: | chr23:183108-182703 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 423-634 |
| Cow position: | chr23:29342403-29342190 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 444-836 |
| Cow position: | chr23:10683841-10683433 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 457-864 |
| Cow position: | chr23:37430553-37430983 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 464-634 |
| Cow position: | chr23:31175897-31176061 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 464-830 |
| Cow position: | chr23:26909176-26909538 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 55 |
| Conread position: | 475-815 |
| Cow position: | chr23:22691914-22691570 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 505-769 |
| Cow position: | chr23:34313531-34313795 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 64, 37 |
| Conread position: | 509-833 |
| Cow position: | chr23:15621276-15620956 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 509-864 |
| Cow position: | chr23:34097138-34096792 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 60, 38 |
| Conread position: | 546-836 |
| Cow position: | chr23:22987034-22987326 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 556-824 |
| Cow position: | chr23:33003665-33003933 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 9, 24 |
| Conread position: | 572-862 |
| Cow position: | chr23:37844581-37844290 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 590-810 |
| Cow position: | chr23:27922472-27922702 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 597-862 |
| Cow position: | chr23:25142393-25142664 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 633-848 |
| Cow position: | chr23:5556043-5556254 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 203, 142 |
| Conread position: | 641-833 |
| Cow position: | chr23:670264-670065 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 27, 73 |
| Conread position: | 641-834 |
| Cow position: | chr23:11188392-11188193 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 79, 34 |
| Conread position: | 685-833 |
| Cow position: | chr23:14556822-14556670 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.