Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 368-634 |
| Cow position: | chr24:26037684-26037432 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 375-833 |
| Cow position: | chr24:26250176-26249722 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 111 |
| Conread position: | 375-862 |
| Cow position: | chr24:37702576-37702073 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 98 |
| Conread position: | 378-829 |
| Cow position: | chr24:405570-405106 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 177 |
| Conread position: | 380-607 |
| Cow position: | chr24:26396200-26395969 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 160 |
| Conread position: | 380-658 |
| Cow position: | chr24:26625767-26625491 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 85 |
| Conread position: | 380-738 |
| Cow position: | chr24:27475829-27475468 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 248 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 85, 175 |
| Conread position: | 380-824 |
| Cow position: | chr24:4254299-4253879 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 304 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 224, 11 |
| Conread position: | 383-607 |
| Cow position: | chr24:806344-806120 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 80, 167 |
| Conread position: | 383-607 |
| Cow position: | chr24:17859722-17859944 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 80, 109 |
| Conread position: | 383-614 |
| Cow position: | chr24:34546095-34545861 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 164 |
| Conread position: | 383-630 |
| Cow position: | chr24:39579007-39578761 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 186, 176 |
| Conread position: | 383-631 |
| Cow position: | chr24:23636368-23636610 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 117 |
| Conread position: | 383-632 |
| Cow position: | chr24:11125509-11125753 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 186, 81 |
| Conread position: | 383-861 |
| Cow position: | chr24:32344381-32344866 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 108 |
| Conread position: | 384-862 |
| Cow position: | chr24:2696967-2696477 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 326 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 81, 29 |
| Conread position: | 387-815 |
| Cow position: | chr24:18361985-18362427 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 133 |
| Conread position: | 414-806 |
| Cow position: | chr24:27649637-27650029 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 272 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 415-634 |
| Cow position: | chr24:39749204-39749431 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 45, 174 |
| Conread position: | 415-836 |
| Cow position: | chr24:2306698-2306282 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 417-818 |
| Cow position: | chr24:44855725-44855326 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 423-634 |
| Cow position: | chr24:31013315-31013523 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 58 |
| Conread position: | 426-666 |
| Cow position: | chr24:24485728-24485972 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 131 |
| Conread position: | 427-842 |
| Cow position: | chr24:38035720-38035323 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 435-742 |
| Cow position: | chr24:889606-889907 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 221 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 436-567 |
| Cow position: | chr24:31755875-31755745 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 436-721 |
| Cow position: | chr24:33395849-33395558 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 57 |
| Conread position: | 549-860 |
| Cow position: | chr24:5678537-5678845 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 572-823 |
| Cow position: | chr24:17104392-17104129 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 10 |
| Conread position: | 578-829 |
| Cow position: | chr24:1834342-1834084 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 578-862 |
| Cow position: | chr24:35563340-35563071 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 89, 12 |
| Conread position: | 631-864 |
| Cow position: | chr24:20668504-20668280 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 634-839 |
| Cow position: | chr24:22143132-22143348 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 104 |
| Conread position: | 637-862 |
| Cow position: | chr24:25415916-25415704 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 641-856 |
| Cow position: | chr24:39037185-39037397 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 157 |
| Conread position: | 663-812 |
| Cow position: | chr24:30417662-30417510 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 663-834 |
| Cow position: | chr24:29073896-29074072 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 680-839 |
| Cow position: | chr24:26037148-26036989 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 27 |
Show alignments to all cow chromosomes.