Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 375-634 |
| Cow position: | chr25:36916604-36916859 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 85, 5 |
| Conread position: | 377-774 |
| Cow position: | chr25:32002585-32002194 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 67 |
| Conread position: | 378-528 |
| Cow position: | chr25:4671880-4671729 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 380-632 |
| Cow position: | chr25:14283583-14283834 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 80, 72 |
| Conread position: | 380-712 |
| Cow position: | chr25:26691603-26691942 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 173 |
| Conread position: | 380-808 |
| Cow position: | chr25:25850777-25850350 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 380-857 |
| Cow position: | chr25:36906349-36905861 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 88 |
| Conread position: | 380-862 |
| Cow position: | chr25:35088480-35088977 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 353 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 382-859 |
| Cow position: | chr25:7020065-7019592 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 156 |
| Conread position: | 383-545 |
| Cow position: | chr25:12880266-12880430 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 80, 111 |
| Conread position: | 383-634 |
| Cow position: | chr25:26905778-26906032 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 80, 162 |
| Conread position: | 383-812 |
| Cow position: | chr25:11389005-11389428 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 171 |
| Conread position: | 383-830 |
| Cow position: | chr25:15459862-15460298 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 77, 170 |
| Conread position: | 384-533 |
| Cow position: | chr25:12342475-12342625 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 384-634 |
| Cow position: | chr25:34498819-34498569 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 76, 48 |
| Conread position: | 384-810 |
| Cow position: | chr25:5767154-5766730 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 30 |
| Conread position: | 384-811 |
| Cow position: | chr25:15323201-15322788 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 294 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 185, 87 |
| Conread position: | 385-547 |
| Cow position: | chr25:16897603-16897437 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 385-830 |
| Cow position: | chr25:9565379-9565826 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 136 |
| Conread position: | 394-573 |
| Cow position: | chr25:12178315-12178497 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 69, 151 |
| Conread position: | 395-634 |
| Cow position: | chr25:16087694-16087451 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 123 |
| Conread position: | 398-634 |
| Cow position: | chr25:615449-615684 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 178, 66 |
| Conread position: | 413-812 |
| Cow position: | chr25:16706600-16706190 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 94 |
| Conread position: | 413-833 |
| Cow position: | chr25:36651570-36651972 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 300 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 45, 106 |
| Conread position: | 415-836 |
| Cow position: | chr25:22633236-22632809 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 102 |
| Conread position: | 417-810 |
| Cow position: | chr25:8891339-8891723 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 432-797 |
| Cow position: | chr25:10946384-10946011 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 440-772 |
| Cow position: | chr25:8457191-8457509 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 442-836 |
| Cow position: | chr25:12506869-12506466 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 189 |
| Conread position: | 445-632 |
| Cow position: | chr25:5657291-5657106 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 19 |
| Conread position: | 469-672 |
| Cow position: | chr25:33543761-33543962 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 98, 78 |
| Conread position: | 470-775 |
| Cow position: | chr25:9602750-9602437 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 56, 72 |
| Conread position: | 470-862 |
| Cow position: | chr25:36929733-36929336 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 485-862 |
| Cow position: | chr25:7056390-7056001 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 266 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 65, 133 |
| Conread position: | 493-817 |
| Cow position: | chr25:37233986-37234318 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 508-861 |
| Cow position: | chr25:12342886-12343239 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 533-806 |
| Cow position: | chr25:12880569-12880834 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 101 |
| Conread position: | 542-808 |
| Cow position: | chr25:12676142-12676412 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 38 |
| Conread position: | 545-778 |
| Cow position: | chr25:16897405-16897162 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 549-832 |
| Cow position: | chr25:21292890-21292606 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 563-834 |
| Cow position: | chr25:13775748-13775469 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 564-833 |
| Cow position: | chr25:30034387-30034120 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 100, 13 |
| Conread position: | 572-831 |
| Cow position: | chr25:38138707-38138444 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 8 |
| Conread position: | 575-834 |
| Cow position: | chr25:12178746-12179006 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 45, 53 |
| Conread position: | 579-833 |
| Cow position: | chr25:5682083-5682337 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 52, 171 |
| Conread position: | 580-834 |
| Cow position: | chr25:18646962-18647210 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 6, 58 |
| Conread position: | 585-756 |
| Cow position: | chr25:16998694-16998867 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 82, 9 |
| Conread position: | 631-808 |
| Cow position: | chr25:12620520-12620699 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 631-815 |
| Cow position: | chr25:32438940-32439131 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 162 |
| Conread position: | 631-864 |
| Cow position: | chr25:26907850-26908072 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 634-834 |
| Cow position: | chr25:16533447-16533655 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 644-779 |
| Cow position: | chr25:23823305-23823166 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 645-833 |
| Cow position: | chr25:18515198-18515006 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 23, 167 |
| Conread position: | 686-853 |
| Cow position: | chr25:5657092-5656922 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 156 |
Show alignments to all cow chromosomes.