Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 372-596 |
| Cow position: | chr28:23163381-23163590 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 169, 9 |
| Conread position: | 374-567 |
| Cow position: | chr28:22574617-22574807 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 375-595 |
| Cow position: | chr28:31272290-31272069 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 377-636 |
| Cow position: | chr28:9870220-9869961 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 83, 98 |
| Conread position: | 379-601 |
| Cow position: | chr28:17290991-17291216 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 84, 114 |
| Conread position: | 380-569 |
| Cow position: | chr28:14622423-14622232 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 380-588 |
| Cow position: | chr28:16464952-16465156 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 85, 138 |
| Conread position: | 380-633 |
| Cow position: | chr28:10069473-10069218 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 9, 172 |
| Conread position: | 380-634 |
| Cow position: | chr28:34404403-34404162 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 187, 46 |
| Conread position: | 380-860 |
| Cow position: | chr28:30309790-30309290 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 187 |
| Conread position: | 381-567 |
| Cow position: | chr28:23892564-23892374 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 79, 174 |
| Conread position: | 381-614 |
| Cow position: | chr28:2293227-2293460 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 158 |
| Conread position: | 381-653 |
| Cow position: | chr28:19294870-19294594 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 82, 115 |
| Conread position: | 383-601 |
| Cow position: | chr28:30574436-30574221 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 5 |
| Conread position: | 383-624 |
| Cow position: | chr28:24563753-24563993 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 75, 92 |
| Conread position: | 383-754 |
| Cow position: | chr28:33853964-33854315 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 85, 162 |
| Conread position: | 383-834 |
| Cow position: | chr28:31442924-31443390 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 383-837 |
| Cow position: | chr28:31371762-31371307 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 65 |
| Conread position: | 383-864 |
| Cow position: | chr28:23181268-23180803 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 159 |
| Conread position: | 384-517 |
| Cow position: | chr28:32360669-32360803 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 384-632 |
| Cow position: | chr28:34360880-34360622 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 206 |
| Conread position: | 384-802 |
| Cow position: | chr28:4119004-4118605 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 384-862 |
| Cow position: | chr28:4066454-4066902 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 53 |
| Conread position: | 386-631 |
| Cow position: | chr28:23167589-23167337 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 154 |
| Conread position: | 390-862 |
| Cow position: | chr28:11874444-11874929 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 332 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 398-634 |
| Cow position: | chr28:8130959-8131215 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 67, 198 |
| Conread position: | 413-808 |
| Cow position: | chr28:611739-612145 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 413-853 |
| Cow position: | chr28:23665698-23665271 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 89 |
| Conread position: | 423-725 |
| Cow position: | chr28:33212216-33212502 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 437-748 |
| Cow position: | chr28:20111597-20111900 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 67 |
| Conread position: | 437-836 |
| Cow position: | chr28:24193078-24192679 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 439-634 |
| Cow position: | chr28:31839798-31839992 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 478-862 |
| Cow position: | chr28:25016386-25016011 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 68 |
| Conread position: | 485-858 |
| Cow position: | chr28:6855047-6855429 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 29 |
| Conread position: | 486-634 |
| Cow position: | chr28:28390974-28391122 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 57 |
| Conread position: | 500-862 |
| Cow position: | chr28:4392476-4392816 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 563-835 |
| Cow position: | chr28:26079690-26079430 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 154, 75 |
| Conread position: | 572-859 |
| Cow position: | chr28:4637309-4637013 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 575-771 |
| Cow position: | chr28:7856715-7856522 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 579-853 |
| Cow position: | chr28:34283323-34283600 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 585-811 |
| Cow position: | chr28:23917972-23917743 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 631-833 |
| Cow position: | chr28:31843568-31843762 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 109, 37 |
| Conread position: | 631-864 |
| Cow position: | chr28:23163596-23163827 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 87, 27 |
| Conread position: | 634-832 |
| Cow position: | chr28:31298733-31298938 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 30, 123 |
| Conread position: | 635-860 |
| Cow position: | chr28:2293809-2294039 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 112 |
| Conread position: | 639-807 |
| Cow position: | chr28:17291229-17291400 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 67 |
| Conread position: | 641-833 |
| Cow position: | chr28:4844173-4844368 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 135 |
| Conread position: | 650-859 |
| Cow position: | chr28:30574202-30573995 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 70, 14 |
| Conread position: | 685-836 |
| Cow position: | chr28:20811270-20811422 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 77 |
Show alignments to all cow chromosomes.