Cow genome map

Conread name: Ss1.1-Pig4-TMW8049J12.3

Conread position: 369-569
Cow position: chr3:9674678-9674475 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 91, 172

Conread position: 369-625
Cow position: chr3:1015726-1015470 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 91, 128

Conread position: 373-633
Cow position: chr3:58637384-58637133 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 105

Conread position: 373-634
Cow position: chr3:9431453-9431193 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 5, 172

Conread position: 374-534
Cow position: chr3:45635264-45635100 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 375-588
Cow position: chr3:50289712-50289926 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 7, 171

Conread position: 377-534
Cow position: chr3:26648204-26648046 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 104

Conread position: 377-632
Cow position: chr3:57970712-57970452 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 183
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 76, 36

Conread position: 379-622
Cow position: chr3:60284016-60284262 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 79, 181

Conread position: 379-804
Cow position: chr3:39976798-39977205 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 102

Conread position: 380-549
Cow position: chr3:65385280-65385448 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 67

Conread position: 380-606
Cow position: chr3:72915123-72915349 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 33

Conread position: 380-608
Cow position: chr3:84020346-84020122 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 80, 33

Conread position: 380-631
Cow position: chr3:72592648-72592890 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 177
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 83, 119

Conread position: 380-634
Cow position: chr3:47471034-47471286 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 181
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 72, 174

Conread position: 380-808
Cow position: chr3:28561098-28560661 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 167

Conread position: 380-833
Cow position: chr3:947268-946809 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 95

Conread position: 380-864
Cow position: chr3:75618787-75619272 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 8

Conread position: 381-629
Cow position: chr3:1997861-1997597 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 172

Conread position: 381-657
Cow position: chr3:59577332-59577608 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 44, 29

Conread position: 383-520
Cow position: chr3:3794081-3794221 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 383-583
Cow position: chr3:50594226-50594026 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 82, 30

Conread position: 383-634
Cow position: chr3:38333292-38333547 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 187
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 77, 170

Conread position: 383-836
Cow position: chr3:83233356-83233803 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 22

Conread position: 383-861
Cow position: chr3:55473913-55474408 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 82

Conread position: 384-567
Cow position: chr3:81057157-81056976 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 158, 38

Conread position: 384-605
Cow position: chr3:41735129-41734918 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 384-634
Cow position: chr3:77776246-77776500 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 187
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 127, 109

Conread position: 384-640
Cow position: chr3:52156530-52156271 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 178
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 165

Conread position: 384-759
Cow position: chr3:28236879-28237257 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 270
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 76, 38

Conread position: 384-813
Cow position: chr3:73155117-73154663 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 101

Conread position: 384-833
Cow position: chr3:53399639-53399202 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 298
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 30

Conread position: 384-834
Cow position: chr3:33614715-33614272 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 81

Conread position: 384-862
Cow position: chr3:74227931-74227449 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 182

Conread position: 387-632
Cow position: chr3:59814248-59813992 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 62, 202

Conread position: 388-634
Cow position: chr3:8528867-8529111 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 178
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 75, 152

Conread position: 389-633
Cow position: chr3:26382109-26382351 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 72, 58

Conread position: 396-634
Cow position: chr3:9631319-9631559 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 69, 144

Conread position: 399-839
Cow position: chr3:32764291-32764713 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 97

Conread position: 413-836
Cow position: chr3:15566667-15566244 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 132

Conread position: 414-836
Cow position: chr3:64079502-64079925 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 89

Conread position: 424-808
Cow position: chr3:53245751-53246141 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 129

Conread position: 427-862
Cow position: chr3:44895612-44896043 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 122

Conread position: 443-839
Cow position: chr3:69187355-69186951 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 17, 140

Conread position: 444-862
Cow position: chr3:76960712-76961142 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 153

Conread position: 447-808
Cow position: chr3:29552876-29553240 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 264
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 92

Conread position: 460-634
Cow position: chr3:62021658-62021831 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 80

Conread position: 464-807
Cow position: chr3:53193186-53192848 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 235
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 103, 19

Conread position: 464-812
Cow position: chr3:53132596-53132248 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 54

Conread position: 466-833
Cow position: chr3:1022309-1021949 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 82

Conread position: 484-838
Cow position: chr3:59608651-59608997 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 85, 26

Conread position: 502-861
Cow position: chr3:71500223-71500594 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 279
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 67, 45

Conread position: 509-828
Cow position: chr3:1044122-1043785 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 510-659
Cow position: chr3:75990957-75990809 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 59, 37

Conread position: 542-808
Cow position: chr3:55364779-55364504 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 27, 40

Conread position: 573-862
Cow position: chr3:54883931-54884212 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 213
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 20, 25

Conread position: 586-862
Cow position: chr3:46287580-46287849 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 206
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 82, 48

Conread position: 612-812
Cow position: chr3:25774485-25774275 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 152
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 52, 5

Conread position: 617-808
Cow position: chr3:76189487-76189682 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 48, 70

Conread position: 622-823
Cow position: chr3:73055034-73055248 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 39, 182

Conread position: 630-834
Cow position: chr3:12618054-12618264 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 630-862
Cow position: chr3:45634966-45634720 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 38, 150

Conread position: 631-834
Cow position: chr3:38335317-38335513 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 150
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 631-860
Cow position: chr3:52154154-52153934 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 87, 21

Conread position: 631-862
Cow position: chr3:4485739-4485980 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 178
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 100

Conread position: 631-862
Cow position: chr3:59811466-59811221 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 182
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 29, 224

Conread position: 634-834
Cow position: chr3:77778583-77778783 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 30, 85

Conread position: 634-862
Cow position: chr3:50593805-50593583 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 5, 31

Conread position: 634-862
Cow position: chr3:73834479-73834248 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 184
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 34, 24

Conread position: 635-861
Cow position: chr3:5415396-5415162 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 29, 213

Conread position: 636-808
Cow position: chr3:43305355-43305535 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 641-808
Cow position: chr3:47473363-47473536 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 0

Conread position: 641-862
Cow position: chr3:1416747-1416523 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 105

Conread position: 641-862
Cow position: chr3:67655229-67655453 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 27, 61

Conread position: 644-831
Cow position: chr3:65385505-65385696 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 41

Conread position: 644-834
Cow position: chr3:47623598-47623798 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 644-834
Cow position: chr3:59676116-59676307 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 74, 14

Conread position: 650-853
Cow position: chr3:39251152-39250946 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 18, 195

Conread position: 661-863
Cow position: chr3:65229838-65230031 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 111, 13

Conread position: 663-836
Cow position: chr3:45845873-45845698 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 55, 23

Conread position: 669-808
Cow position: chr3:34588705-34588564 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 21

Conread position: 674-833
Cow position: chr3:60576332-60576492 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 99, 0

Conread position: 676-862
Cow position: chr3:80294384-80294567 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 67

Conread position: 685-836
Cow position: chr3:26647668-26647522 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 686-833
Cow position: chr3:1015449-1015295 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 691-862
Cow position: chr3:2173937-2174109 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 27, 150

Show alignments to all cow chromosomes.