Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 373-634 |
| Cow position: | chr4:65729478-65729743 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 90, 54 |
| Conread position: | 377-634 |
| Cow position: | chr4:502641-502901 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 86, 125 |
| Conread position: | 377-806 |
| Cow position: | chr4:63067021-63067462 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 113 |
| Conread position: | 377-834 |
| Cow position: | chr4:31537485-31537928 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 319 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 26, 67 |
| Conread position: | 378-839 |
| Cow position: | chr4:65394425-65393963 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 379-617 |
| Cow position: | chr4:20524768-20524532 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 171 |
| Conread position: | 380-545 |
| Cow position: | chr4:32440268-32440438 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 151 |
| Conread position: | 380-621 |
| Cow position: | chr4:65166253-65166492 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 183, 117 |
| Conread position: | 380-634 |
| Cow position: | chr4:65337872-65337621 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 40, 121 |
| Conread position: | 380-752 |
| Cow position: | chr4:36945456-36945820 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 122 |
| Conread position: | 381-555 |
| Cow position: | chr4:33046628-33046453 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 79, 171 |
| Conread position: | 383-569 |
| Cow position: | chr4:26130999-26131186 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 78, 167 |
| Conread position: | 383-629 |
| Cow position: | chr4:55540993-55541244 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 80, 107 |
| Conread position: | 383-633 |
| Cow position: | chr4:10657666-10657910 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 85, 113 |
| Conread position: | 383-633 |
| Cow position: | chr4:35207096-35207352 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 77, 161 |
| Conread position: | 383-634 |
| Cow position: | chr4:1775512-1775759 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 19, 122 |
| Conread position: | 383-634 |
| Cow position: | chr4:42872518-42872768 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 162 |
| Conread position: | 383-634 |
| Cow position: | chr4:61681940-61682191 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 157 |
| Conread position: | 383-781 |
| Cow position: | chr4:34440034-34439636 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 383-836 |
| Cow position: | chr4:57300379-57299926 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 155 |
| Conread position: | 383-862 |
| Cow position: | chr4:24857052-24857526 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 53 |
| Conread position: | 383-862 |
| Cow position: | chr4:51864056-51863573 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 8 |
| Conread position: | 384-567 |
| Cow position: | chr4:41802019-41802201 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 125 |
| Conread position: | 384-591 |
| Cow position: | chr4:9359388-9359179 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 384-624 |
| Cow position: | chr4:42603375-42603136 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 156 |
| Conread position: | 384-634 |
| Cow position: | chr4:23593442-23593690 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 76, 63 |
| Conread position: | 384-770 |
| Cow position: | chr4:21882179-21882551 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 273 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 81, 130 |
| Conread position: | 384-862 |
| Cow position: | chr4:36446423-36445960 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 384-862 |
| Cow position: | chr4:62172120-62172555 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 331 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 76, 172 |
| Conread position: | 385-807 |
| Cow position: | chr4:30419118-30419537 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 388-608 |
| Cow position: | chr4:36709710-36709932 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 72, 152 |
| Conread position: | 389-634 |
| Cow position: | chr4:6274130-6274376 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 400-659 |
| Cow position: | chr4:13892824-13893076 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 37, 56 |
| Conread position: | 408-812 |
| Cow position: | chr4:10919683-10919268 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 413-849 |
| Cow position: | chr4:33943913-33943488 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 422-862 |
| Cow position: | chr4:14347358-14346926 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 132 |
| Conread position: | 423-824 |
| Cow position: | chr4:50836350-50835935 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 168 |
| Conread position: | 428-862 |
| Cow position: | chr4:23540784-23541226 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 121 |
| Conread position: | 440-836 |
| Cow position: | chr4:53353893-53354307 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 111 |
| Conread position: | 441-836 |
| Cow position: | chr4:4106033-4105665 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 442-607 |
| Cow position: | chr4:39842194-39842363 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 103 |
| Conread position: | 442-683 |
| Cow position: | chr4:36157282-36157042 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 443-808 |
| Cow position: | chr4:54437233-54437611 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 106 |
| Conread position: | 444-632 |
| Cow position: | chr4:17376819-17377011 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 14, 142 |
| Conread position: | 444-815 |
| Cow position: | chr4:51611139-51611522 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 444-862 |
| Cow position: | chr4:25862295-25862703 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 446-634 |
| Cow position: | chr4:66666588-66666402 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 106, 54 |
| Conread position: | 458-862 |
| Cow position: | chr4:24862778-24862372 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 464-617 |
| Cow position: | chr4:19880089-19879938 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 482-634 |
| Cow position: | chr4:8406796-8406648 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 510-862 |
| Cow position: | chr4:63005093-63004741 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 82, 42 |
| Conread position: | 539-816 |
| Cow position: | chr4:34559345-34559628 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 543-851 |
| Cow position: | chr4:4372410-4372089 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 92 |
| Conread position: | 543-861 |
| Cow position: | chr4:25702955-25703261 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 549-842 |
| Cow position: | chr4:50823951-50824233 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 550-839 |
| Cow position: | chr4:23734837-23734528 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 232 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 564-771 |
| Cow position: | chr4:37819815-37820022 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 578-864 |
| Cow position: | chr4:3123058-3122767 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 86, 136 |
| Conread position: | 579-833 |
| Cow position: | chr4:58505929-58506199 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 603-808 |
| Cow position: | chr4:36710208-36710419 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 37 |
| Conread position: | 631-802 |
| Cow position: | chr4:68984276-68984440 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 30 |
| Conread position: | 631-808 |
| Cow position: | chr4:53822673-53822854 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 34, 123 |
| Conread position: | 631-833 |
| Cow position: | chr4:22837925-22837722 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 631-833 |
| Cow position: | chr4:44337545-44337753 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 129 |
| Conread position: | 631-862 |
| Cow position: | chr4:61521891-61522129 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 167 |
| Conread position: | 635-796 |
| Cow position: | chr4:66281348-66281173 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 636-862 |
| Cow position: | chr4:41389455-41389226 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 31, 207 |
| Conread position: | 639-861 |
| Cow position: | chr4:6276166-6276394 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 209 |
| Conread position: | 641-833 |
| Cow position: | chr4:27744864-27745059 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 27, 82 |
| Conread position: | 641-833 |
| Cow position: | chr4:68484989-68485181 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 27 |
| Conread position: | 641-860 |
| Cow position: | chr4:28796955-28797160 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 68 |
| Conread position: | 644-808 |
| Cow position: | chr4:35833539-35833703 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 127, 30 |
| Conread position: | 644-833 |
| Cow position: | chr4:42873961-42874154 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 645-823 |
| Cow position: | chr4:60436308-60436129 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 73, 14 |
| Conread position: | 648-864 |
| Cow position: | chr4:48729419-48729206 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 69, 26 |
| Conread position: | 673-833 |
| Cow position: | chr4:65166563-65166724 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 674-806 |
| Cow position: | chr4:65730129-65730260 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 99, 39 |
| Conread position: | 674-829 |
| Cow position: | chr4:7743411-7743256 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 57, 23 |
Show alignments to all cow chromosomes.