Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 358-862 |
| Cow position: | chr5:75321683-75322187 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 369-821 |
| Cow position: | chr5:66878669-66879142 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 14 |
| Conread position: | 370-634 |
| Cow position: | chr5:30622376-30622106 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 84, 11 |
| Conread position: | 372-614 |
| Cow position: | chr5:32134274-32134038 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 14, 170 |
| Conread position: | 372-634 |
| Cow position: | chr5:5227406-5227667 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 103 |
| Conread position: | 372-832 |
| Cow position: | chr5:15834697-15835162 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 316 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 54, 90 |
| Conread position: | 373-529 |
| Cow position: | chr5:21949700-21949860 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 374-771 |
| Cow position: | chr5:8240461-8240062 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 140 |
| Conread position: | 376-632 |
| Cow position: | chr5:3801849-3801604 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 193, 93 |
| Conread position: | 376-659 |
| Cow position: | chr5:71595062-71595343 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 5, 156 |
| Conread position: | 377-608 |
| Cow position: | chr5:28813523-28813758 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 176 |
| Conread position: | 380-546 |
| Cow position: | chr5:54392910-54393077 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 380-579 |
| Cow position: | chr5:28410147-28410347 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 159 |
| Conread position: | 380-634 |
| Cow position: | chr5:20956996-20957246 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 380-634 |
| Cow position: | chr5:31524522-31524273 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 189, 82 |
| Conread position: | 380-700 |
| Cow position: | chr5:3102943-3103270 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 380-817 |
| Cow position: | chr5:25730060-25730487 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 166 |
| Conread position: | 380-833 |
| Cow position: | chr5:24609161-24609624 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 383-534 |
| Cow position: | chr5:9220112-9220262 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 81, 13 |
| Conread position: | 383-598 |
| Cow position: | chr5:49803251-49803465 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 383-605 |
| Cow position: | chr5:75148123-75147897 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 383-607 |
| Cow position: | chr5:45946099-45945889 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 184, 74 |
| Conread position: | 383-612 |
| Cow position: | chr5:51729405-51729178 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 30 |
| Conread position: | 383-630 |
| Cow position: | chr5:50957898-50958146 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 69, 173 |
| Conread position: | 383-634 |
| Cow position: | chr5:29513705-29513461 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 125 |
| Conread position: | 383-634 |
| Cow position: | chr5:29739781-29739528 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 32, 20 |
| Conread position: | 383-634 |
| Cow position: | chr5:67647610-67647362 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 44 |
| Conread position: | 383-836 |
| Cow position: | chr5:373217-373683 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 18 |
| Conread position: | 383-864 |
| Cow position: | chr5:10915381-10914898 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 384-545 |
| Cow position: | chr5:30348545-30348706 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 40, 128 |
| Conread position: | 384-592 |
| Cow position: | chr5:34904087-34903879 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 109 |
| Conread position: | 384-632 |
| Cow position: | chr5:48398901-48398649 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 135 |
| Conread position: | 384-751 |
| Cow position: | chr5:2967491-2967853 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 149, 141 |
| Conread position: | 384-864 |
| Cow position: | chr5:53629970-53629474 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 386-752 |
| Cow position: | chr5:65750705-65750334 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 106 |
| Conread position: | 391-628 |
| Cow position: | chr5:35448829-35448591 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 72, 154 |
| Conread position: | 393-836 |
| Cow position: | chr5:38398023-38398470 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 157 |
| Conread position: | 396-832 |
| Cow position: | chr5:12177540-12177990 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 398-615 |
| Cow position: | chr5:21782740-21782959 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 155 |
| Conread position: | 399-822 |
| Cow position: | chr5:58371198-58370789 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 128 |
| Conread position: | 400-808 |
| Cow position: | chr5:35612331-35612745 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 139 |
| Conread position: | 413-584 |
| Cow position: | chr5:47761361-47761187 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 47, 132 |
| Conread position: | 413-707 |
| Cow position: | chr5:5727934-5727632 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 137 |
| Conread position: | 423-798 |
| Cow position: | chr5:65093225-65092836 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 135 |
| Conread position: | 426-634 |
| Cow position: | chr5:32187225-32187018 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 88 |
| Conread position: | 426-709 |
| Cow position: | chr5:36808262-36808536 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 43, 154 |
| Conread position: | 428-632 |
| Cow position: | chr5:71726209-71726001 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 167 |
| Conread position: | 435-862 |
| Cow position: | chr5:28860627-28860188 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 107 |
| Conread position: | 442-634 |
| Cow position: | chr5:36720418-36720601 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 447-756 |
| Cow position: | chr5:76079385-76079698 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 29 |
| Conread position: | 447-862 |
| Cow position: | chr5:7925921-7925502 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 449-834 |
| Cow position: | chr5:12310465-12310083 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 481-833 |
| Cow position: | chr5:2179914-2179549 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 494-816 |
| Cow position: | chr5:55787588-55787266 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 505-864 |
| Cow position: | chr5:26990630-26990977 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 33 |
| Conread position: | 509-860 |
| Cow position: | chr5:68845394-68845062 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 60, 44 |
| Conread position: | 516-862 |
| Cow position: | chr5:26366034-26365699 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 542-862 |
| Cow position: | chr5:39793433-39793749 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 10 |
| Conread position: | 560-713 |
| Cow position: | chr5:42469876-42470028 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 118 |
| Conread position: | 579-833 |
| Cow position: | chr5:28410387-28410646 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 581-836 |
| Cow position: | chr5:59245150-59244899 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 136, 79 |
| Conread position: | 631-833 |
| Cow position: | chr5:33060426-33060628 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 143 |
| Conread position: | 631-834 |
| Cow position: | chr5:31118045-31118263 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 37, 71 |
| Conread position: | 631-860 |
| Cow position: | chr5:3460068-3459838 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 631-862 |
| Cow position: | chr5:40554221-40553979 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 30, 222 |
| Conread position: | 640-862 |
| Cow position: | chr5:10042855-10042632 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 641-856 |
| Cow position: | chr5:14306605-14306821 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 27, 120 |
| Conread position: | 641-862 |
| Cow position: | chr5:47758569-47758349 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 641-862 |
| Cow position: | chr5:61071212-61071417 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 644-836 |
| Cow position: | chr5:35085460-35085651 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 645-863 |
| Cow position: | chr5:27476751-27476961 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 653-860 |
| Cow position: | chr5:34903841-34903624 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 64, 196 |
| Conread position: | 661-864 |
| Cow position: | chr5:71055080-71054877 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 7, 129 |
| Conread position: | 662-834 |
| Cow position: | chr5:66613508-66613680 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 6 |
| Conread position: | 663-848 |
| Cow position: | chr5:3485487-3485670 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 109, 163 |
| Conread position: | 665-833 |
| Cow position: | chr5:42470042-42470210 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 665-854 |
| Cow position: | chr5:28049099-28049280 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 666-836 |
| Cow position: | chr5:71725891-71725716 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 685-839 |
| Cow position: | chr5:28814080-28814244 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 685-862 |
| Cow position: | chr5:39437475-39437298 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 155 |
Show alignments to all cow chromosomes.