Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 352-761 |
| Cow position: | chr6:3559122-3559515 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 290 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 358-634 |
| Cow position: | chr6:11755830-11755556 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 102, 5 |
| Conread position: | 362-652 |
| Cow position: | chr6:1840441-1840735 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 366-862 |
| Cow position: | chr6:8140129-8140638 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 6 |
| Conread position: | 370-607 |
| Cow position: | chr6:51082817-51082579 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 90, 175 |
| Conread position: | 372-591 |
| Cow position: | chr6:5561606-5561386 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 375-631 |
| Cow position: | chr6:9416203-9416461 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 191 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 85, 204 |
| Conread position: | 375-746 |
| Cow position: | chr6:19436890-19436519 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 128 |
| Conread position: | 376-834 |
| Cow position: | chr6:12850116-12849645 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 172 |
| Conread position: | 379-633 |
| Cow position: | chr6:1437844-1438089 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 129 |
| Conread position: | 380-837 |
| Cow position: | chr6:1525709-1525252 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 57 |
| Conread position: | 381-633 |
| Cow position: | chr6:662102-661847 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 83, 32 |
| Conread position: | 383-534 |
| Cow position: | chr6:68269653-68269807 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 383-631 |
| Cow position: | chr6:46657355-46657603 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 56, 21 |
| Conread position: | 383-632 |
| Cow position: | chr6:7029164-7029409 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 77, 127 |
| Conread position: | 383-633 |
| Cow position: | chr6:5847479-5847715 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 186, 79 |
| Conread position: | 383-634 |
| Cow position: | chr6:4513789-4514036 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 14, 170 |
| Conread position: | 383-634 |
| Cow position: | chr6:8007389-8007135 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 383-808 |
| Cow position: | chr6:12925223-12924801 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 157 |
| Conread position: | 383-843 |
| Cow position: | chr6:68079621-68080089 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 314 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 383-862 |
| Cow position: | chr6:35273571-35274059 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 127 |
| Conread position: | 384-535 |
| Cow position: | chr6:51027932-51028086 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 384-635 |
| Cow position: | chr6:58005882-58006115 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 79, 36 |
| Conread position: | 384-834 |
| Cow position: | chr6:53392069-53392520 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 161 |
| Conread position: | 384-838 |
| Cow position: | chr6:35236187-35235713 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 125 |
| Conread position: | 384-855 |
| Cow position: | chr6:138295-137829 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 384-862 |
| Cow position: | chr6:50875757-50875283 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 385-633 |
| Cow position: | chr6:14634807-14634561 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 184, 79 |
| Conread position: | 385-834 |
| Cow position: | chr6:6348405-6348855 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 125 |
| Conread position: | 386-634 |
| Cow position: | chr6:44703697-44703950 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 17 |
| Conread position: | 387-612 |
| Cow position: | chr6:12499782-12499557 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 158 |
| Conread position: | 387-631 |
| Cow position: | chr6:6664026-6663779 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 387-634 |
| Cow position: | chr6:9821471-9821226 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 67, 81 |
| Conread position: | 388-769 |
| Cow position: | chr6:28181836-28182217 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 166 |
| Conread position: | 391-588 |
| Cow position: | chr6:57498346-57498545 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 69, 121 |
| Conread position: | 392-634 |
| Cow position: | chr6:67793648-67793409 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 73, 122 |
| Conread position: | 399-862 |
| Cow position: | chr6:49494039-49494493 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 327 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 154 |
| Conread position: | 413-634 |
| Cow position: | chr6:38791016-38791237 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 47, 76 |
| Conread position: | 413-634 |
| Cow position: | chr6:62096366-62096151 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 52, 100 |
| Conread position: | 413-639 |
| Cow position: | chr6:6382657-6382429 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 413-833 |
| Cow position: | chr6:49221825-49221402 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 429-584 |
| Cow position: | chr6:488459-488302 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 442-631 |
| Cow position: | chr6:57370522-57370330 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 442-634 |
| Cow position: | chr6:6469151-6469343 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 490-659 |
| Cow position: | chr6:8367340-8367509 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 490-840 |
| Cow position: | chr6:43676992-43676659 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 503-665 |
| Cow position: | chr6:34575519-34575359 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 516-862 |
| Cow position: | chr6:16214505-16214853 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 542-833 |
| Cow position: | chr6:50979366-50979660 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 29 |
| Conread position: | 542-861 |
| Cow position: | chr6:57339144-57339459 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 543-808 |
| Cow position: | chr6:38274975-38275242 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 557-852 |
| Cow position: | chr6:42749517-42749815 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 564-862 |
| Cow position: | chr6:32536923-32536640 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 16 |
| Conread position: | 579-833 |
| Cow position: | chr6:50800082-50799811 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 7, 139 |
| Conread position: | 579-833 |
| Cow position: | chr6:68269805-68270076 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 585-859 |
| Cow position: | chr6:49168616-49168331 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 76, 266 |
| Conread position: | 621-836 |
| Cow position: | chr6:49349582-49349799 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 630-862 |
| Cow position: | chr6:11754319-11754079 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 213 |
| Conread position: | 630-862 |
| Cow position: | chr6:46660801-46661040 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 127 |
| Conread position: | 631-834 |
| Cow position: | chr6:6480421-6480637 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 631-848 |
| Cow position: | chr6:7202691-7202468 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 37, 204 |
| Conread position: | 634-833 |
| Cow position: | chr6:5849419-5849633 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 638-807 |
| Cow position: | chr6:68278167-68278343 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 70 |
| Conread position: | 638-823 |
| Cow position: | chr6:67789631-67789444 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 641-833 |
| Cow position: | chr6:46886149-46885948 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 641-861 |
| Cow position: | chr6:9789470-9789699 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 101 |
| Conread position: | 641-861 |
| Cow position: | chr6:16752012-16752236 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 160 |
| Conread position: | 643-839 |
| Cow position: | chr6:51030922-51031116 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 130, 15 |
| Conread position: | 644-808 |
| Cow position: | chr6:6520773-6520937 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 644-833 |
| Cow position: | chr6:49330526-49330720 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 156 |
| Conread position: | 644-834 |
| Cow position: | chr6:57368149-57367955 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 644-836 |
| Cow position: | chr6:34575081-34574898 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 644-836 |
| Cow position: | chr6:60176725-60176925 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 652-859 |
| Cow position: | chr6:29110858-29110650 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 190 |
| Conread position: | 663-862 |
| Cow position: | chr6:5561073-5560869 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 182 |
| Conread position: | 664-833 |
| Cow position: | chr6:6660318-6660146 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 674-862 |
| Cow position: | chr6:8367666-8367850 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 674-862 |
| Cow position: | chr6:44706927-44707111 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 676-833 |
| Cow position: | chr6:62095774-62095614 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 97, 9 |
| Conread position: | 684-836 |
| Cow position: | chr6:60626709-60626863 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 123 |
Show alignments to all cow chromosomes.