Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 368-819 |
| Cow position: | chr7:25813308-25813752 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 19 |
| Conread position: | 369-834 |
| Cow position: | chr7:36977143-36977602 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 325 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 15, 102 |
| Conread position: | 374-588 |
| Cow position: | chr7:51402347-51402555 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 374-634 |
| Cow position: | chr7:61696216-61695958 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 375-607 |
| Cow position: | chr7:31622524-31622744 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 185, 62 |
| Conread position: | 375-654 |
| Cow position: | chr7:34664090-34663827 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 85, 118 |
| Conread position: | 377-545 |
| Cow position: | chr7:11345822-11345651 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 378-556 |
| Cow position: | chr7:11511549-11511727 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 86, 161 |
| Conread position: | 380-632 |
| Cow position: | chr7:686037-685791 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 380-714 |
| Cow position: | chr7:24961449-24961134 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 80, 122 |
| Conread position: | 380-859 |
| Cow position: | chr7:66602042-66601583 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 23 |
| Conread position: | 383-551 |
| Cow position: | chr7:636115-636279 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 383-553 |
| Cow position: | chr7:26319872-26319699 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 383-580 |
| Cow position: | chr7:49240974-49240778 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 82, 161 |
| Conread position: | 383-607 |
| Cow position: | chr7:20933426-20933210 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 186, 49 |
| Conread position: | 383-622 |
| Cow position: | chr7:62598793-62598561 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 62 |
| Conread position: | 383-632 |
| Cow position: | chr7:53495738-53495984 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 19 |
| Conread position: | 383-633 |
| Cow position: | chr7:51916180-51915939 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 162 |
| Conread position: | 383-659 |
| Cow position: | chr7:63607800-63607529 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 105 |
| Conread position: | 383-752 |
| Cow position: | chr7:6435838-6436199 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 159 |
| Conread position: | 384-592 |
| Cow position: | chr7:32548526-32548733 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 185, 158 |
| Conread position: | 384-634 |
| Cow position: | chr7:47830453-47830683 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 79, 115 |
| Conread position: | 385-584 |
| Cow position: | chr7:39013319-39013120 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 68 |
| Conread position: | 385-833 |
| Cow position: | chr7:64840434-64840002 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 318 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 78, 28 |
| Conread position: | 386-631 |
| Cow position: | chr7:45757188-45757441 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 20 |
| Conread position: | 387-534 |
| Cow position: | chr7:9117627-9117476 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 387-715 |
| Cow position: | chr7:21224301-21223977 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 131 |
| Conread position: | 396-857 |
| Cow position: | chr7:19398441-19397989 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 69, 160 |
| Conread position: | 397-634 |
| Cow position: | chr7:61151503-61151273 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 176, 66 |
| Conread position: | 428-632 |
| Cow position: | chr7:12444229-12444021 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 117 |
| Conread position: | 429-624 |
| Cow position: | chr7:56686759-56686563 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 440-833 |
| Cow position: | chr7:58544357-58544753 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 444-781 |
| Cow position: | chr7:11075424-11075070 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 460-813 |
| Cow position: | chr7:53546953-53546603 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 465-808 |
| Cow position: | chr7:17218117-17217787 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 252, 38 |
| Conread position: | 490-834 |
| Cow position: | chr7:61899339-61899688 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 11 |
| Conread position: | 496-833 |
| Cow position: | chr7:44290503-44290843 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 540-764 |
| Cow position: | chr7:17919623-17919394 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 127, 40 |
| Conread position: | 572-813 |
| Cow position: | chr7:49240548-49240292 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 579-808 |
| Cow position: | chr7:42358935-42359161 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 22, 50 |
| Conread position: | 579-864 |
| Cow position: | chr7:54191734-54192020 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 11, 84 |
| Conread position: | 580-771 |
| Cow position: | chr7:18408069-18408263 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 631-833 |
| Cow position: | chr7:26319054-26318840 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 631-833 |
| Cow position: | chr7:63983991-63984209 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 634-834 |
| Cow position: | chr7:47833042-47833255 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 634-860 |
| Cow position: | chr7:35906189-35905964 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 635-812 |
| Cow position: | chr7:51912843-51912660 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 641-834 |
| Cow position: | chr7:59572319-59572128 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 55 |
| Conread position: | 641-862 |
| Cow position: | chr7:3332726-3332501 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 27, 203 |
| Conread position: | 644-808 |
| Cow position: | chr7:63607011-63606842 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 644-833 |
| Cow position: | chr7:27241274-27241083 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 74, 15 |
| Conread position: | 644-864 |
| Cow position: | chr7:24469055-24468841 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 127, 15 |
| Conread position: | 650-864 |
| Cow position: | chr7:51406218-51406437 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 663-824 |
| Cow position: | chr7:53448128-53448291 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 50, 137 |
| Conread position: | 671-854 |
| Cow position: | chr7:56089389-56089203 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 674-830 |
| Cow position: | chr7:22805754-22805910 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 674-833 |
| Cow position: | chr7:9117048-9116889 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 674-841 |
| Cow position: | chr7:48724920-48725085 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 44, 97 |
| Conread position: | 728-834 |
| Cow position: | chr7:68166472-68166365 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
Show alignments to all cow chromosomes.