Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 368-535 |
| Cow position: | chr8:8017367-8017198 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 131 |
| Conread position: | 371-631 |
| Cow position: | chr8:24206656-24206912 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 92, 20 |
| Conread position: | 374-597 |
| Cow position: | chr8:682946-682720 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 91, 178 |
| Conread position: | 376-554 |
| Cow position: | chr8:45527074-45527248 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 112 |
| Conread position: | 376-751 |
| Cow position: | chr8:20348333-20348720 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 377-595 |
| Cow position: | chr8:5961013-5961234 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 76, 95 |
| Conread position: | 377-862 |
| Cow position: | chr8:22618842-22619316 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 61 |
| Conread position: | 378-616 |
| Cow position: | chr8:30428072-30428304 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 379-808 |
| Cow position: | chr8:15640550-15640976 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 113 |
| Conread position: | 380-551 |
| Cow position: | chr8:57191806-57191981 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 380-590 |
| Cow position: | chr8:19512729-19512937 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 103, 90 |
| Conread position: | 380-607 |
| Cow position: | chr8:50036317-50036088 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 175 |
| Conread position: | 380-632 |
| Cow position: | chr8:18897328-18897561 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 189, 44 |
| Conread position: | 380-633 |
| Cow position: | chr8:8682119-8682366 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 78, 111 |
| Conread position: | 380-634 |
| Cow position: | chr8:13244258-13244005 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 203, 167 |
| Conread position: | 380-634 |
| Cow position: | chr8:29810990-29810736 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 380-860 |
| Cow position: | chr8:18793084-18793546 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 80, 112 |
| Conread position: | 383-567 |
| Cow position: | chr8:12067717-12067902 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 170 |
| Conread position: | 383-569 |
| Cow position: | chr8:53731014-53730826 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 80, 163 |
| Conread position: | 383-622 |
| Cow position: | chr8:43166918-43166679 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 76, 114 |
| Conread position: | 383-631 |
| Cow position: | chr8:24790899-24790653 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 90, 154 |
| Conread position: | 383-633 |
| Cow position: | chr8:48418592-48418835 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 197, 31 |
| Conread position: | 383-634 |
| Cow position: | chr8:27322731-27322970 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 215, 86 |
| Conread position: | 383-634 |
| Cow position: | chr8:35287965-35287714 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 77, 168 |
| Conread position: | 383-634 |
| Cow position: | chr8:55587622-55587876 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 383-634 |
| Cow position: | chr8:59148283-59148534 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 383-794 |
| Cow position: | chr8:57041228-57040816 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 139 |
| Conread position: | 383-807 |
| Cow position: | chr8:22941186-22941626 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 200 |
| Conread position: | 383-833 |
| Cow position: | chr8:50922874-50922413 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 153 |
| Conread position: | 384-630 |
| Cow position: | chr8:22396363-22396119 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 81, 116 |
| Conread position: | 384-639 |
| Cow position: | chr8:20924372-20924114 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 188 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 167, 80 |
| Conread position: | 384-642 |
| Cow position: | chr8:22997221-22996972 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 79, 47 |
| Conread position: | 384-843 |
| Cow position: | chr8:1975848-1975362 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 422 |
| Conread position: | 384-862 |
| Cow position: | chr8:23393299-23392828 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 96 |
| Conread position: | 386-544 |
| Cow position: | chr8:51161287-51161445 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 386-808 |
| Cow position: | chr8:19616598-19617013 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 175 |
| Conread position: | 387-634 |
| Cow position: | chr8:45457543-45457295 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 73, 196 |
| Conread position: | 390-632 |
| Cow position: | chr8:19678458-19678210 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 70, 207 |
| Conread position: | 391-601 |
| Cow position: | chr8:42581404-42581198 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 145 |
| Conread position: | 397-630 |
| Cow position: | chr8:4984102-4984334 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 64, 40 |
| Conread position: | 413-635 |
| Cow position: | chr8:19153265-19153044 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 52, 136 |
| Conread position: | 417-597 |
| Cow position: | chr8:7468845-7469021 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 119 |
| Conread position: | 440-633 |
| Cow position: | chr8:17215814-17215614 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 440-834 |
| Cow position: | chr8:35150631-35150237 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 76 |
| Conread position: | 440-864 |
| Cow position: | chr8:20808111-20807689 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 444-634 |
| Cow position: | chr8:4291283-4291098 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 475-654 |
| Cow position: | chr8:31267819-31267994 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 62 |
| Conread position: | 507-841 |
| Cow position: | chr8:47427729-47428067 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 562-832 |
| Cow position: | chr8:38071143-38070870 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 565-836 |
| Cow position: | chr8:52085202-52084926 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 572-812 |
| Cow position: | chr8:815826-815580 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 579-834 |
| Cow position: | chr8:12067977-12068234 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 12, 185 |
| Conread position: | 581-787 |
| Cow position: | chr8:52197190-52196979 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 87, 52 |
| Conread position: | 631-832 |
| Cow position: | chr8:48421634-48421837 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 13 |
| Conread position: | 631-864 |
| Cow position: | chr8:42700847-42700612 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 37, 9 |
| Conread position: | 633-807 |
| Cow position: | chr8:18738323-18738142 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 634-802 |
| Cow position: | chr8:44288104-44288272 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 634-858 |
| Cow position: | chr8:43831454-43831230 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 635-836 |
| Cow position: | chr8:18899447-18899659 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 640-848 |
| Cow position: | chr8:24209401-24209620 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 644-833 |
| Cow position: | chr8:41210288-41210098 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 644-834 |
| Cow position: | chr8:51589174-51588977 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 646-860 |
| Cow position: | chr8:17213609-17213401 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 103, 10 |
| Conread position: | 650-864 |
| Cow position: | chr8:51500819-51500600 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 18, 102 |
| Conread position: | 663-833 |
| Cow position: | chr8:24788472-24788302 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 664-819 |
| Cow position: | chr8:13238830-13238677 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 113, 10 |
| Conread position: | 674-810 |
| Cow position: | chr8:59153705-59153836 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 674-832 |
| Cow position: | chr8:42871561-42871725 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 674-862 |
| Cow position: | chr8:8012157-8011970 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 680-834 |
| Cow position: | chr8:4288903-4288749 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 91, 48 |
Show alignments to all cow chromosomes.