Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 364-659 |
| Cow position: | chr9:1498709-1499010 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 193 |
| Conread position: | 373-634 |
| Cow position: | chr9:8635691-8635425 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 374-607 |
| Cow position: | chr9:8752657-8752890 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 89, 171 |
| Conread position: | 374-751 |
| Cow position: | chr9:45292140-45291746 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 31, 149 |
| Conread position: | 374-801 |
| Cow position: | chr9:10301069-10300638 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 375-864 |
| Cow position: | chr9:35843811-35844303 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 174 |
| Conread position: | 376-535 |
| Cow position: | chr9:34085678-34085838 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 84, 5 |
| Conread position: | 380-632 |
| Cow position: | chr9:7777912-7778169 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 380-633 |
| Cow position: | chr9:10577645-10577893 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 80, 59 |
| Conread position: | 380-634 |
| Cow position: | chr9:37409877-37409623 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 114 |
| Conread position: | 380-679 |
| Cow position: | chr9:43325532-43325232 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 80, 162 |
| Conread position: | 380-853 |
| Cow position: | chr9:12851369-12851835 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 118 |
| Conread position: | 380-862 |
| Cow position: | chr9:45375776-45376287 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 489 |
| Conread position: | 380-864 |
| Cow position: | chr9:24111686-24112167 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 143 |
| Conread position: | 381-596 |
| Cow position: | chr9:10787621-10787838 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 381-607 |
| Cow position: | chr9:32953564-32953793 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 172 |
| Conread position: | 383-588 |
| Cow position: | chr9:35598941-35599148 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 82, 165 |
| Conread position: | 383-588 |
| Cow position: | chr9:49270467-49270262 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 119 |
| Conread position: | 383-607 |
| Cow position: | chr9:14862842-14863062 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 383-624 |
| Cow position: | chr9:46843975-46843743 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 80, 113 |
| Conread position: | 383-629 |
| Cow position: | chr9:4023041-4023290 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 383-649 |
| Cow position: | chr9:27724814-27725078 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 124 |
| Conread position: | 383-679 |
| Cow position: | chr9:53113072-53112776 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 77, 164 |
| Conread position: | 383-776 |
| Cow position: | chr9:33247940-33247537 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 160 |
| Conread position: | 383-797 |
| Cow position: | chr9:26521078-26520663 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 161 |
| Conread position: | 383-808 |
| Cow position: | chr9:37256733-37257163 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 117 |
| Conread position: | 383-862 |
| Cow position: | chr9:23866681-23867166 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 140 |
| Conread position: | 384-567 |
| Cow position: | chr9:36721439-36721624 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 79, 169 |
| Conread position: | 384-607 |
| Cow position: | chr9:29008467-29008237 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 166 |
| Conread position: | 384-714 |
| Cow position: | chr9:29001445-29001775 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 173 |
| Conread position: | 386-634 |
| Cow position: | chr9:52422520-52422765 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 74, 136 |
| Conread position: | 390-577 |
| Cow position: | chr9:58609580-58609770 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 63, 156 |
| Conread position: | 396-860 |
| Cow position: | chr9:44688521-44688988 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 149 |
| Conread position: | 416-605 |
| Cow position: | chr9:38433081-38433270 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 44, 121 |
| Conread position: | 420-832 |
| Cow position: | chr9:38755945-38755538 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 92 |
| Conread position: | 442-634 |
| Cow position: | chr9:37516190-37516377 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 16, 112 |
| Conread position: | 459-633 |
| Cow position: | chr9:30056723-30056893 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 110, 83 |
| Conread position: | 464-830 |
| Cow position: | chr9:30866409-30866041 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 465-831 |
| Cow position: | chr9:43482380-43482017 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 516-862 |
| Cow position: | chr9:26143114-26143468 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 36 |
| Conread position: | 542-864 |
| Cow position: | chr9:8040363-8040036 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 36 |
| Conread position: | 543-824 |
| Cow position: | chr9:24927658-24927944 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 547-810 |
| Cow position: | chr9:48128818-48128551 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 22, 36 |
| Conread position: | 556-839 |
| Cow position: | chr9:16488092-16488367 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 36 |
| Conread position: | 566-862 |
| Cow position: | chr9:34086025-34086322 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 591-863 |
| Cow position: | chr9:31629555-31629279 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 13, 198 |
| Conread position: | 631-808 |
| Cow position: | chr9:7077150-7076969 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 37, 129 |
| Conread position: | 631-853 |
| Cow position: | chr9:10787843-10788053 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 127 |
| Conread position: | 631-862 |
| Cow position: | chr9:51578129-51578367 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 45, 126 |
| Conread position: | 631-864 |
| Cow position: | chr9:3089897-3089665 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 33 |
| Conread position: | 641-834 |
| Cow position: | chr9:35599167-35599359 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 27, 94 |
| Conread position: | 644-862 |
| Cow position: | chr9:18118961-18118746 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 74, 14 |
| Conread position: | 644-864 |
| Cow position: | chr9:52423102-52423316 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 85, 15 |
| Conread position: | 645-833 |
| Cow position: | chr9:55623942-55624136 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 663-833 |
| Cow position: | chr9:8633366-8633194 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 663-834 |
| Cow position: | chr9:30768116-30767944 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 65 |
| Conread position: | 663-862 |
| Cow position: | chr9:10734534-10734336 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 55, 177 |
| Conread position: | 664-862 |
| Cow position: | chr9:60792221-60792416 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 669-833 |
| Cow position: | chr9:43325011-43324849 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 671-810 |
| Cow position: | chr9:30059232-30059374 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 674-861 |
| Cow position: | chr9:49270233-49270047 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 47, 166 |
| Conread position: | 685-833 |
| Cow position: | chr9:50381693-50381541 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 33, 107 |
| Conread position: | 685-836 |
| Cow position: | chr9:7778181-7778335 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.