Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049J12.3 |
| Conread position: | 374-634 |
| Cow position: | chrX:28128243-28127979 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 29, 146 |
| Conread position: | 374-833 |
| Cow position: | chrX:20874947-20875408 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 49 |
| Conread position: | 374-834 |
| Cow position: | chrX:2060714-2061186 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 375-606 |
| Cow position: | chrX:25305957-25306186 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 88, 163 |
| Conread position: | 378-771 |
| Cow position: | chrX:4199231-4198857 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 267, 91 |
| Conread position: | 378-833 |
| Cow position: | chrX:2874591-2874141 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 45 |
| Conread position: | 383-558 |
| Cow position: | chrX:6011977-6011803 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 383-569 |
| Cow position: | chrX:6857530-6857342 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 383-586 |
| Cow position: | chrX:40552931-40552732 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 383-607 |
| Cow position: | chrX:25487270-25487487 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 10, 114 |
| Conread position: | 383-609 |
| Cow position: | chrX:11791361-11791583 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 69, 40 |
| Conread position: | 383-634 |
| Cow position: | chrX:3524331-3524083 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 186, 81 |
| Conread position: | 383-715 |
| Cow position: | chrX:39353169-39353482 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 77, 111 |
| Conread position: | 383-786 |
| Cow position: | chrX:1177186-1176762 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 212 |
| Conread position: | 383-819 |
| Cow position: | chrX:16885787-16885350 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 383-834 |
| Cow position: | chrX:4265315-4264855 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 172 |
| Conread position: | 383-862 |
| Cow position: | chrX:13036013-13035529 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 167 |
| Conread position: | 384-607 |
| Cow position: | chrX:37148753-37148534 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 85, 5 |
| Conread position: | 384-632 |
| Cow position: | chrX:7168442-7168197 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 152 |
| Conread position: | 384-775 |
| Cow position: | chrX:43080700-43081087 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 79, 160 |
| Conread position: | 384-836 |
| Cow position: | chrX:36067025-36067492 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 165 |
| Conread position: | 384-850 |
| Cow position: | chrX:22314720-22314241 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 310 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 30, 111 |
| Conread position: | 387-634 |
| Cow position: | chrX:11692114-11691867 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 73, 158 |
| Conread position: | 387-808 |
| Cow position: | chrX:16953720-16954130 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 137 |
| Conread position: | 388-825 |
| Cow position: | chrX:21621573-21622013 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 93 |
| Conread position: | 447-862 |
| Cow position: | chrX:10257528-10257092 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 141 |
| Conread position: | 490-818 |
| Cow position: | chrX:28809637-28809968 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 48 |
| Conread position: | 494-862 |
| Cow position: | chrX:4436290-4435924 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 58 |
| Conread position: | 516-801 |
| Cow position: | chrX:43071090-43070821 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 47 |
| Conread position: | 516-834 |
| Cow position: | chrX:42129045-42129374 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 118, 40 |
| Conread position: | 539-833 |
| Cow position: | chrX:41811164-41811467 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 576-808 |
| Cow position: | chrX:40552449-40552205 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 156 |
| Conread position: | 586-831 |
| Cow position: | chrX:37407711-37407949 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 591-811 |
| Cow position: | chrX:17822328-17822108 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 631-836 |
| Cow position: | chrX:22865852-22865633 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 631-862 |
| Cow position: | chrX:36837309-36837075 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 41, 89 |
| Conread position: | 631-864 |
| Cow position: | chrX:21823386-21823142 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 32, 219 |
| Conread position: | 635-864 |
| Cow position: | chrX:7661679-7661911 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 641-834 |
| Cow position: | chrX:6857303-6857103 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 641-863 |
| Cow position: | chrX:3521758-3521533 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 27, 72 |
| Conread position: | 644-808 |
| Cow position: | chrX:25789143-25788977 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 644-860 |
| Cow position: | chrX:14815058-14815275 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 12 |
| Conread position: | 674-812 |
| Cow position: | chrX:31058597-31058733 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 674-863 |
| Cow position: | chrX:2398237-2398045 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 167 |
| Conread position: | 681-860 |
| Cow position: | chrX:36752480-36752663 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 39, 163 |
| Conread position: | 682-836 |
| Cow position: | chrX:7168185-7168025 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 737-862 |
| Cow position: | chrX:34325927-34326050 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 103 |
Show alignments to all cow chromosomes.