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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8049M02.5
        

               
Conread position:
               
39-426
               

               
Cow position:
               
chr1:20104529-20104146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
21, 46
               

               
Conread position:
               
41-536
               

               
Cow position:
               
chr1:4691848-4691364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
193, 38
               

               
Conread position:
               
44-345
               

               
Cow position:
               
chr1:8671029-8670734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
67, 11
               

               
Conread position:
               
44-501
               

               
Cow position:
               
chr1:83072707-83072250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 28
               

               
Conread position:
               
44-536
               

               
Cow position:
               
chr1:11225999-11226474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 28
               

               
Conread position:
               
44-550
               

               
Cow position:
               
chr1:63434557-63435043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 35
               

               
Conread position:
               
45-474
               

               
Cow position:
               
chr1:67304983-67305411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
45-536
               

               
Cow position:
               
chr1:24132799-24133284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
46-364
               

               
Cow position:
               
chr1:3941960-3942267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
44, 24
               

               
Conread position:
               
46-371
               

               
Cow position:
               
chr1:98576308-98575982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
46-389
               

               
Cow position:
               
chr1:95153481-95153139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
29, 93
               

               
Conread position:
               
46-536
               

               
Cow position:
               
chr1:69265057-69264593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
300, 45
               

               
Conread position:
               
46-558
               

               
Cow position:
               
chr1:71253303-71253804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 85
               

               
Conread position:
               
47-463
               

               
Cow position:
               
chr1:42175984-42175565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
47-536
               

               
Cow position:
               
chr1:10633296-10632825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
80, 51
               

               
Conread position:
               
47-536
               

               
Cow position:
               
chr1:66355455-66355937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 40
               

               
Conread position:
               
47-550
               

               
Cow position:
               
chr1:78092293-78091792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
47-567
               

               
Cow position:
               
chr1:1980852-1981367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 88
               

               
Conread position:
               
48-438
               

               
Cow position:
               
chr1:5023503-5023890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
36, 75
               

               
Conread position:
               
49-499
               

               
Cow position:
               
chr1:92369979-92369537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 85
               

               
Conread position:
               
49-567
               

               
Cow position:
               
chr1:37886564-37887043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
288, 28
               

               
Conread position:
               
54-308
               

               
Cow position:
               
chr1:44269330-44269090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
159, 39
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr1:50992178-50991858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
55-536
               

               
Cow position:
               
chr1:52995277-52994795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
55-536
               

               
Cow position:
               
chr1:56225713-56225247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 30
               

               
Conread position:
               
56-536
               

               
Cow position:
               
chr1:82505224-82504738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
57-385
               

               
Cow position:
               
chr1:68672345-68672677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
32, 15
               

               
Conread position:
               
57-536
               

               
Cow position:
               
chr1:89341740-89342221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 20
               

               
Conread position:
               
57-552
               

               
Cow position:
               
chr1:61885162-61884673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
58-547
               

               
Cow position:
               
chr1:80336000-80336485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 14
               

               
Conread position:
               
60-378
               

               
Cow position:
               
chr1:89157873-89158200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
61-365
               

               
Cow position:
               
chr1:54267695-54267991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 82
               

               
Conread position:
               
62-405
               

               
Cow position:
               
chr1:81580420-81580074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
77, 17
               

               
Conread position:
               
62-537
               

               
Cow position:
               
chr1:55230217-55229755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
44, 81
               

               
Conread position:
               
64-343
               

               
Cow position:
               
chr1:33775403-33775682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
64-534
               

               
Cow position:
               
chr1:74083945-74084418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
64-550
               

               
Cow position:
               
chr1:21836174-21835708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
65-376
               

               
Cow position:
               
chr1:78067838-78068133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
65-552
               

               
Cow position:
               
chr1:85162317-85162789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 68
               

               
Conread position:
               
65-554
               

               
Cow position:
               
chr1:7443220-7442741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
66-351
               

               
Cow position:
               
chr1:102529614-102529900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 13
               

               
Conread position:
               
66-466
               

               
Cow position:
               
chr1:45552999-45553393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 70
               

               
Conread position:
               
66-526
               

               
Cow position:
               
chr1:53671518-53671968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chr1:47658587-47658126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
15, 76
               

               
Conread position:
               
66-540
               

               
Cow position:
               
chr1:70227453-70227934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
35, 13
               

               
Conread position:
               
67-551
               

               
Cow position:
               
chr1:42887041-42887504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
67-552
               

               
Cow position:
               
chr1:29935147-29935623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 82
               

               
Conread position:
               
68-499
               

               
Cow position:
               
chr1:33206635-33207066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
32, 133
               

               
Conread position:
               
68-537
               

               
Cow position:
               
chr1:55705012-55705483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 44
               

               
Conread position:
               
68-537
               

               
Cow position:
               
chr1:71119757-71119282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
38, 16
               

               
Conread position:
               
68-552
               

               
Cow position:
               
chr1:68253842-68253349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 65
               

               
Conread position:
               
69-497
               

               
Cow position:
               
chr1:73545673-73546096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
36, 21
               

               
Conread position:
               
69-526
               

               
Cow position:
               
chr1:6304627-6305087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
90, 53
               

               
Conread position:
               
69-543
               

               
Cow position:
               
chr1:83748175-83747706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 64
               

               
Conread position:
               
69-548
               

               
Cow position:
               
chr1:48581362-48580892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
35, 14
               

               
Conread position:
               
69-567
               

               
Cow position:
               
chr1:61741732-61742223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
70-503
               

               
Cow position:
               
chr1:5423501-5423930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
93, 26
               

               
Conread position:
               
71-516
               

               
Cow position:
               
chr1:196776-197216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 13
               

               
Conread position:
               
72-552
               

               
Cow position:
               
chr1:45007717-45007224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 202
               

               
Conread position:
               
73-365
               

               
Cow position:
               
chr1:83463815-83463535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
42, 61
               

               
Conread position:
               
73-501
               

               
Cow position:
               
chr1:7748444-7748019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
90, 8
               

               
Conread position:
               
73-501
               

               
Cow position:
               
chr1:7752608-7752185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
90, 8
               

               
Conread position:
               
73-537
               

               
Cow position:
               
chr1:64803864-64804337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 11
               

               
Conread position:
               
74-470
               

               
Cow position:
               
chr1:86110517-86110898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
66, 25
               

               
Conread position:
               
76-552
               

               
Cow position:
               
chr1:36880514-36880036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
140, 14
               

               
Conread position:
               
79-437
               

               
Cow position:
               
chr1:78839025-78838665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
80-535
               

               
Cow position:
               
chr1:70538830-70538376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 61
               

               
Conread position:
               
81-387
               

               
Cow position:
               
chr1:102305923-102306222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
81-457
               

               
Cow position:
               
chr1:86682339-86682716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 65
               

               
Conread position:
               
81-534
               

               
Cow position:
               
chr1:95177160-95176709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 89
               

               
Conread position:
               
81-552
               

               
Cow position:
               
chr1:81290727-81290276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
242, 60
               

               
Conread position:
               
82-536
               

               
Cow position:
               
chr1:96964540-96964092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
84-464
               

               
Cow position:
               
chr1:80311649-80311310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 14
               

               
Conread position:
               
84-540
               

               
Cow position:
               
chr1:89381495-89381046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 60
               

               
Conread position:
               
84-550
               

               
Cow position:
               
chr1:16766865-16767325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 58
               

               
Conread position:
               
86-333
               

               
Cow position:
               
chr1:83024949-83025192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 9
               

               
Conread position:
               
86-524
               

               
Cow position:
               
chr1:98461505-98461074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 47
               

               
Conread position:
               
87-476
               

               
Cow position:
               
chr1:55428736-55429128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
103, 54
               

               
Conread position:
               
87-531
               

               
Cow position:
               
chr1:70422520-70422077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
22, 43
               

               
Conread position:
               
87-536
               

               
Cow position:
               
chr1:52435492-52435042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
72, 54
               

               
Conread position:
               
90-549
               

               
Cow position:
               
chr1:11853472-11853929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
65, 45
               

               
Conread position:
               
90-550
               

               
Cow position:
               
chr1:25383884-25383422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
91-535
               

               
Cow position:
               
chr1:68817587-68818025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 45
               

               
Conread position:
               
91-537
               

               
Cow position:
               
chr1:1878238-1877798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
91-539
               

               
Cow position:
               
chr1:89076409-89076867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
91-550
               

               
Cow position:
               
chr1:52496981-52496536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
115, 51
               

               
Conread position:
               
91-552
               

               
Cow position:
               
chr1:86113185-86113655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
91-577
               

               
Cow position:
               
chr1:12222389-12222872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
92-537
               

               
Cow position:
               
chr1:59519123-59518672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
240, 50
               

               
Conread position:
               
92-550
               

               
Cow position:
               
chr1:50930766-50931209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
93-552
               

               
Cow position:
               
chr1:68618724-68619179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
94-410
               

               
Cow position:
               
chr1:82513142-82513463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
229, 47
               

               
Conread position:
               
94-472
               

               
Cow position:
               
chr1:88913530-88913149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
73, 48
               

               
Conread position:
               
94-485
               

               
Cow position:
               
chr1:90621296-90621692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 47
               

               
Conread position:
               
94-522
               

               
Cow position:
               
chr1:19885595-19885170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
94-550
               

               
Cow position:
               
chr1:81568819-81569279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
95-494
               

               
Cow position:
               
chr1:61012515-61012123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
242, 46
               

               
Conread position:
               
97-323
               

               
Cow position:
               
chr1:45315424-45315652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
97-508
               

               
Cow position:
               
chr1:5597005-5597399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
99-435
               

               
Cow position:
               
chr1:79640084-79640421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
233, 42
               

               
Conread position:
               
100-459
               

               
Cow position:
               
chr1:22192974-22192608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
255, 37
               

               
Conread position:
               
100-550
               

               
Cow position:
               
chr1:21578014-21577565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
63, 105
               

               
Conread position:
               
100-550
               

               
Cow position:
               
chr1:101916374-101915929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
66, 101
               

               
Conread position:
               
101-552
               

               
Cow position:
               
chr1:91065943-91066390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
29, 19
               

               
Conread position:
               
102-537
               

               
Cow position:
               
chr1:54258771-54258338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 39
               

               
Conread position:
               
105-365
               

               
Cow position:
               
chr1:95072542-95072272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
106-535
               

               
Cow position:
               
chr1:43388856-43389275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 36
               

               
Conread position:
               
110-442
               

               
Cow position:
               
chr1:89449092-89448759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 31
               

               
Conread position:
               
110-453
               

               
Cow position:
               
chr1:65318771-65318426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 21
               

               
Conread position:
               
110-550
               

               
Cow position:
               
chr1:14379356-14379773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
221, 32
               

               
Conread position:
               
111-567
               

               
Cow position:
               
chr1:56618463-56618933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
267, 32
               

               
Conread position:
               
115-492
               

               
Cow position:
               
chr1:75933456-75933088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
119-536
               

               
Cow position:
               
chr1:28177188-28176771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
16, 33
               

               
Conread position:
               
124-533
               

               
Cow position:
               
chr1:69415526-69415943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
41, 21
               

               
Conread position:
               
134-369
               

               
Cow position:
               
chr1:64113619-64113856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
28, 54
               

               
Conread position:
               
138-500
               

               
Cow position:
               
chr1:58754631-58754977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
138-536
               

               
Cow position:
               
chr1:66138489-66138088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
145-453
               

               
Cow position:
               
chr1:23512499-23512804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
7, 26
               

               
Conread position:
               
145-455
               

               
Cow position:
               
chr1:18780169-18780485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
136, 57
               

               
Conread position:
               
145-484
               

               
Cow position:
               
chr1:40246511-40246855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
32, 76
               

               
Conread position:
               
145-549
               

               
Cow position:
               
chr1:48730669-48731067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
45, 134
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chr1:36875189-36874775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
16, 129
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chr1:36932317-36931919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
49, 83
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chr1:67821061-67821450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
120, 160
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chr1:95764929-95765329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
13, 30
               

               
Conread position:
               
145-551
               

               
Cow position:
               
chr1:90868275-90868677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 188
               

               
Conread position:
               
145-552
               

               
Cow position:
               
chr1:82884231-82884627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 87
               

               
Conread position:
               
146-350
               

               
Cow position:
               
chr1:57091133-57090933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
186, 37
               

               
Conread position:
               
146-423
               

               
Cow position:
               
chr1:261317-261598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
19, 77
               

               
Conread position:
               
146-550
               

               
Cow position:
               
chr1:81613547-81613142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 9
               

               
Conread position:
               
147-314
               

               
Cow position:
               
chr1:97750461-97750626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
147-503
               

               
Cow position:
               
chr1:39509890-39510245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
39, 84
               

               
Conread position:
               
147-537
               

               
Cow position:
               
chr1:33996764-33997141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
56, 68
               

               
Conread position:
               
147-537
               

               
Cow position:
               
chr1:98551877-98551484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 49
               

               
Conread position:
               
147-552
               

               
Cow position:
               
chr1:57900566-57900983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 45
               

               
Conread position:
               
147-552
               

               
Cow position:
               
chr1:96136624-96136243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
228, 45
               

               
Conread position:
               
150-523
               

               
Cow position:
               
chr1:84910495-84910849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
146, 37
               

               
Conread position:
               
150-550
               

               
Cow position:
               
chr1:79164936-79165332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 26
               

               
Conread position:
               
150-568
               

               
Cow position:
               
chr1:84238968-84239366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
181, 37
               

               
Conread position:
               
151-412
               

               
Cow position:
               
chr1:10716650-10716394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
180, 36
               

               
Conread position:
               
151-482
               

               
Cow position:
               
chr1:57297647-57297304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
152-365
               

               
Cow position:
               
chr1:79004124-79003916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
185, 35
               

               
Conread position:
               
152-541
               

               
Cow position:
               
chr1:16961854-16962248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
45, 72
               

               
Conread position:
               
152-550
               

               
Cow position:
               
chr1:88618750-88618352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 27
               

               
Conread position:
               
153-418
               

               
Cow position:
               
chr1:98512078-98511813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
233, 34
               

               
Conread position:
               
153-550
               

               
Cow position:
               
chr1:39068803-39069191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
154-466
               

               
Cow position:
               
chr1:3882309-3882627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
177, 8
               

               
Conread position:
               
155-412
               

               
Cow position:
               
chr1:23998784-23999029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
155-550
               

               
Cow position:
               
chr1:65103768-65103395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
34, 46
               

               
Conread position:
               
156-442
               

               
Cow position:
               
chr1:85549928-85550216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
156-530
               

               
Cow position:
               
chr1:85867738-85867372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
51, 31
               

               
Conread position:
               
156-549
               

               
Cow position:
               
chr1:13414173-13413788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
184, 31
               

               
Conread position:
               
157-404
               

               
Cow position:
               
chr1:77232430-77232668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
158-336
               

               
Cow position:
               
chr1:82556265-82556438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
158-462
               

               
Cow position:
               
chr1:98413917-98413608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
169, 28
               

               
Conread position:
               
159-492
               

               
Cow position:
               
chr1:68763541-68763866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
221, 44
               

               
Conread position:
               
159-537
               

               
Cow position:
               
chr1:86672070-86672458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 48
               

               
Conread position:
               
160-370
               

               
Cow position:
               
chr1:48206391-48206598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
157, 27
               

               
Conread position:
               
160-537
               

               
Cow position:
               
chr1:21461012-21460638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
169, 22
               

               
Conread position:
               
161-537
               

               
Cow position:
               
chr1:55357150-55357515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
72, 31
               

               
Conread position:
               
161-550
               

               
Cow position:
               
chr1:3324013-3323618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
88, 22
               

               
Conread position:
               
162-469
               

               
Cow position:
               
chr1:40192565-40192848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
162-482
               

               
Cow position:
               
chr1:91874775-91875085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 9
               

               
Conread position:
               
162-550
               

               
Cow position:
               
chr1:89741852-89742252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
61, 25
               

               
Conread position:
               
162-552
               

               
Cow position:
               
chr1:47233335-47233717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
215, 25
               

               
Conread position:
               
163-410
               

               
Cow position:
               
chr1:79660260-79660508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
163-455
               

               
Cow position:
               
chr1:101834958-101834673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
199, 34
               

               
Conread position:
               
163-527
               

               
Cow position:
               
chr1:49433122-49433484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
223, 24
               

               
Conread position:
               
163-550
               

               
Cow position:
               
chr1:38277887-38278285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
164-536
               

               
Cow position:
               
chr1:53308251-53308621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
172, 61
               

               
Conread position:
               
164-558
               

               
Cow position:
               
chr1:45555506-45555113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
165-389
               

               
Cow position:
               
chr1:80841786-80841572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
165-467
               

               
Cow position:
               
chr1:96081618-96081320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
250, 21
               

               
Conread position:
               
165-526
               

               
Cow position:
               
chr1:7971556-7971212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
20, 167
               

               
Conread position:
               
165-536
               

               
Cow position:
               
chr1:95499357-95499724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 18
               

               
Conread position:
               
165-550
               

               
Cow position:
               
chr1:11913735-11914117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
40, 53
               

               
Conread position:
               
165-550
               

               
Cow position:
               
chr1:34856486-34856869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
41, 52
               

               
Conread position:
               
165-567
               

               
Cow position:
               
chr1:874794-874386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
42, 22
               

               
Conread position:
               
166-406
               

               
Cow position:
               
chr1:7023260-7023018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
161, 21
               

               
Conread position:
               
166-552
               

               
Cow position:
               
chr1:73960839-73960455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 27
               

               
Conread position:
               
166-578
               

               
Cow position:
               
chr1:45019660-45020071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
166-582
               

               
Cow position:
               
chr1:49317355-49317792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
59, 67
               

               
Conread position:
               
167-525
               

               
Cow position:
               
chr1:26178669-26179032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
28, 66
               

               
Conread position:
               
167-534
               

               
Cow position:
               
chr1:95035211-95035582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
23, 50
               

               
Conread position:
               
167-552
               

               
Cow position:
               
chr1:93499758-93499380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
169-427
               

               
Cow position:
               
chr1:69551349-69551607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
163, 52
               

               
Conread position:
               
169-508
               

               
Cow position:
               
chr1:69127026-69127368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
169-517
               

               
Cow position:
               
chr1:90975951-90976292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
179, 47
               

               
Conread position:
               
169-520
               

               
Cow position:
               
chr1:97779127-97778783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
34, 18
               

               
Conread position:
               
169-530
               

               
Cow position:
               
chr1:71643520-71643886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
169-552
               

               
Cow position:
               
chr1:95057181-95056813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
217, 18
               

               
Conread position:
               
170-364
               

               
Cow position:
               
chr1:79146682-79146878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
161, 78
               

               
Conread position:
               
170-431
               

               
Cow position:
               
chr1:5539137-5539404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
170-457
               

               
Cow position:
               
chr1:41115584-41115868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
92, 34
               

               
Conread position:
               
170-459
               

               
Cow position:
               
chr1:33409487-33409783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
170-484
               

               
Cow position:
               
chr1:89388479-89388155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 17
               

               
Conread position:
               
170-497
               

               
Cow position:
               
chr1:33330958-33331278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 33
               

               
Conread position:
               
170-534
               

               
Cow position:
               
chr1:71078826-71079182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 17
               

               
Conread position:
               
170-534
               

               
Cow position:
               
chr1:85593913-85593546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
35, 48
               

               
Conread position:
               
170-535
               

               
Cow position:
               
chr1:68276550-68276179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr1:10941960-10942320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
154, 24
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr1:10964426-10964066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
154, 24
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr1:24728701-24729068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
25, 59
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr1:78811174-78810807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 17
               

               
Conread position:
               
170-548
               

               
Cow position:
               
chr1:37321865-37322243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 90
               

               
Conread position:
               
170-549
               

               
Cow position:
               
chr1:101791981-101792338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
20, 44
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chr1:20002092-20002476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chr1:31765234-31765635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
25, 63
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chr1:51628372-51628742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
20, 70
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chr1:79591236-79590860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr1:70829039-70828672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
100, 58
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr1:75744999-75744618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 291
               

               
Conread position:
               
170-554
               

               
Cow position:
               
chr1:72068695-72069071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
19, 283
               

               
Conread position:
               
170-559
               

               
Cow position:
               
chr1:13637529-13637922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 24
               

               
Conread position:
               
171-373
               

               
Cow position:
               
chr1:80584563-80584365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
171-552
               

               
Cow position:
               
chr1:101714251-101713874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 20
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr1:24530634-24530481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
172-340
               

               
Cow position:
               
chr1:41027208-41027042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
172-342
               

               
Cow position:
               
chr1:67654186-67654356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
172-362
               

               
Cow position:
               
chr1:81481249-81481439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
170, 24
               

               
Conread position:
               
172-371
               

               
Cow position:
               
chr1:3965968-3965776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
172-440
               

               
Cow position:
               
chr1:101860350-101860625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
53, 15
               

               
Conread position:
               
172-451
               

               
Cow position:
               
chr1:91023330-91023615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 106
               

               
Conread position:
               
172-534
               

               
Cow position:
               
chr1:57575628-57575994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 163
               

               
Conread position:
               
172-536
               

               
Cow position:
               
chr1:96947586-96947922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
169, 75
               

               
Conread position:
               
172-547
               

               
Cow position:
               
chr1:53398109-53397747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 27
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chr1:13547844-13548230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
95, 20
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chr1:22729189-22728807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chr1:43505662-43505283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 21
               

               
Conread position:
               
173-466
               

               
Cow position:
               
chr1:85647648-85647944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 43
               

               
Conread position:
               
173-526
               

               
Cow position:
               
chr1:93044149-93043807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 14
               

               
Conread position:
               
173-536
               

               
Cow position:
               
chr1:100800483-100800128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
173-537
               

               
Cow position:
               
chr1:3923668-3924023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
207, 14
               

               
Conread position:
               
174-316
               

               
Cow position:
               
chr1:68688716-68688574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
174-477
               

               
Cow position:
               
chr1:101632205-101632508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
163, 18
               

               
Conread position:
               
174-491
               

               
Cow position:
               
chr1:78097062-78096752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
17, 218
               

               
Conread position:
               
174-526
               

               
Cow position:
               
chr1:15334024-15333662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
151, 85
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr1:36998318-36997970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
236, 134
               

               
Conread position:
               
174-536
               

               
Cow position:
               
chr1:21508528-21508159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
21, 59
               

               
Conread position:
               
174-548
               

               
Cow position:
               
chr1:51770225-51769847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 44
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr1:10778694-10778331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr1:22827292-22826929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 194
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr1:52039769-52039397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 58
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr1:53374562-53374195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
176-468
               

               
Cow position:
               
chr1:38754053-38753753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
176-517
               

               
Cow position:
               
chr1:679475-679821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 41
               

               
Conread position:
               
176-548
               

               
Cow position:
               
chr1:81913026-81913390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
176-549
               

               
Cow position:
               
chr1:6102770-6103152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
14, 45
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chr1:68217233-68217600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chr1:72034794-72035169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
176-552
               

               
Cow position:
               
chr1:635327-634949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
19, 41
               

               
Conread position:
               
176-552
               

               
Cow position:
               
chr1:41697187-41696815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 82
               

               
Conread position:
               
176-554
               

               
Cow position:
               
chr1:54206685-54207060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 23
               

               
Conread position:
               
177-483
               

               
Cow position:
               
chr1:42545651-42545959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
153, 16
               

               
Conread position:
               
177-550
               

               
Cow position:
               
chr1:29626781-29627155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
178-527
               

               
Cow position:
               
chr1:71295162-71295535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
178-537
               

               
Cow position:
               
chr1:100552102-100551741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
90, 9
               

               
Conread position:
               
178-550
               

               
Cow position:
               
chr1:41056807-41056444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 144
               

               
Conread position:
               
178-550
               

               
Cow position:
               
chr1:93528828-93528450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
178-552
               

               
Cow position:
               
chr1:1956208-1956571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
178-552
               

               
Cow position:
               
chr1:61005436-61005808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 9
               

               
Conread position:
               
178-571
               

               
Cow position:
               
chr1:72011686-72012062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
207, 15
               

               
Conread position:
               
179-459
               

               
Cow position:
               
chr1:91811905-91811631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
26, 15
               

               
Conread position:
               
179-550
               

               
Cow position:
               
chr1:82880770-82880425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
145, 8
               

               
Conread position:
               
179-556
               

               
Cow position:
               
chr1:4291290-4290909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
180-371
               

               
Cow position:
               
chr1:30136225-30136418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
25, 98
               

               
Conread position:
               
180-389
               

               
Cow position:
               
chr1:37124258-37124045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
32, 6
               

               
Conread position:
               
180-484
               

               
Cow position:
               
chr1:20667618-20667918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
85, 7
               

               
Conread position:
               
180-508
               

               
Cow position:
               
chr1:94261660-94261347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
230, 7
               

               
Conread position:
               
180-515
               

               
Cow position:
               
chr1:62036930-62036593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 139
               

               
Conread position:
               
180-527
               

               
Cow position:
               
chr1:11729300-11728958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
28, 7
               

               
Conread position:
               
180-535
               

               
Cow position:
               
chr1:97611532-97611880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
34, 7
               

               
Conread position:
               
180-537
               

               
Cow position:
               
chr1:84811811-84812166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 214
               

               
Conread position:
               
180-540
               

               
Cow position:
               
chr1:20000623-20000981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
140, 13
               

               
Conread position:
               
180-549
               

               
Cow position:
               
chr1:21787465-21787087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 362
               

               
Conread position:
               
180-549
               

               
Cow position:
               
chr1:74822576-74822212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chr1:39417990-39418358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
32, 7
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chr1:41252285-41252643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 7
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chr1:6078018-6077652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 47
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chr1:24534132-24534485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
206, 7
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chr1:56477719-56477353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
160, 236
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chr1:89509794-89510174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 177
               

               
Conread position:
               
180-555
               

               
Cow position:
               
chr1:100762202-100761846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
69, 7
               

               
Conread position:
               
181-461
               

               
Cow position:
               
chr1:97090450-97090167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
152, 5
               

               
Conread position:
               
181-508
               

               
Cow position:
               
chr1:28563444-28563769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
153, 11
               

               
Conread position:
               
181-533
               

               
Cow position:
               
chr1:52487857-52488186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
42, 6
               

               
Conread position:
               
181-533
               

               
Cow position:
               
chr1:87072819-87072479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
54, 12
               

               
Conread position:
               
181-537
               

               
Cow position:
               
chr1:69678201-69678555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 6
               

               
Conread position:
               
181-547
               

               
Cow position:
               
chr1:98594689-98594330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
236, 6
               

               
Conread position:
               
181-550
               

               
Cow position:
               
chr1:8349200-8349551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
24, 6
               

               
Conread position:
               
181-552
               

               
Cow position:
               
chr1:48105312-48105676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 6
               

               
Conread position:
               
181-552
               

               
Cow position:
               
chr1:78857205-78857564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 6
               

               
Conread position:
               
182-440
               

               
Cow position:
               
chr1:41047179-41047436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
158, 12
               

               
Conread position:
               
182-467
               

               
Cow position:
               
chr1:93554959-93554680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
166, 33
               

               
Conread position:
               
182-549
               

               
Cow position:
               
chr1:95215064-95215425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
182-551
               

               
Cow position:
               
chr1:53458820-53458464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 81
               

               
Conread position:
               
182-552
               

               
Cow position:
               
chr1:68855290-68854933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 187
               

               
Conread position:
               
183-516
               

               
Cow position:
               
chr1:100393036-100393373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 144
               

               
Conread position:
               
183-550
               

               
Cow position:
               
chr1:51446008-51445639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
146, 9
               

               
Conread position:
               
184-540
               

               
Cow position:
               
chr1:15691453-15691105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
25, 10
               

               
Conread position:
               
184-550
               

               
Cow position:
               
chr1:51968585-51968230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
155, 112
               

               
Conread position:
               
186-547
               

               
Cow position:
               
chr1:85411698-85411342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
24, 31
               

               
Conread position:
               
186-550
               

               
Cow position:
               
chr1:31499746-31499387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
76, 113
               

               
Conread position:
               
187-371
               

               
Cow position:
               
chr1:46143342-46143526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 76
               

               
Conread position:
               
187-384
               

               
Cow position:
               
chr1:48769922-48769727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
187-471
               

               
Cow position:
               
chr1:24581696-24581416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
132, 97
               

               
Conread position:
               
187-515
               

               
Cow position:
               
chr1:12464544-12464871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 270
               

               
Conread position:
               
187-535
               

               
Cow position:
               
chr1:100706246-100705905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
193, 95
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chr1:63504451-63504110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
187-539
               

               
Cow position:
               
chr1:98360284-98360640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
187-546
               

               
Cow position:
               
chr1:44125518-44125877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
135, 76
               

               
Conread position:
               
187-548
               

               
Cow position:
               
chr1:54478449-54478084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 291
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chr1:93110495-93110865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
72, 126
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chr1:62964386-62964037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
176, 140
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chr1:70533820-70534176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
132, 7
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chr1:72304269-72304613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chr1:79844585-79844227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 140
               

               
Conread position:
               
188-383
               

               
Cow position:
               
chr1:35671658-35671466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
181, 72
               

               
Conread position:
               
188-389
               

               
Cow position:
               
chr1:67688464-67688660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
179, 64
               

               
Conread position:
               
188-420
               

               
Cow position:
               
chr1:6826180-6826405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
188-441
               

               
Cow position:
               
chr1:42541717-42541459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
202, 246
               

               
Conread position:
               
188-442
               

               
Cow position:
               
chr1:43311652-43311913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 255
               

               
Conread position:
               
188-457
               

               
Cow position:
               
chr1:87197939-87197674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 183
               

               
Conread position:
               
188-468
               

               
Cow position:
               
chr1:96276932-96277219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
55, 77
               

               
Conread position:
               
188-476
               

               
Cow position:
               
chr1:73196110-73196404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
80, 66
               

               
Conread position:
               
188-526
               

               
Cow position:
               
chr1:98031041-98030696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 28
               

               
Conread position:
               
188-530
               

               
Cow position:
               
chr1:43872201-43872553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
129, 64
               

               
Conread position:
               
188-535
               

               
Cow position:
               
chr1:6941587-6941238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
90, 154
               

               
Conread position:
               
188-535
               

               
Cow position:
               
chr1:6959000-6958651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
90, 154
               

               
Conread position:
               
188-536
               

               
Cow position:
               
chr1:69694874-69695237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
108, 96
               

               
Conread position:
               
188-539
               

               
Cow position:
               
chr1:49796111-49795773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chr1:8734-8382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
227, 132
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chr1:61391672-61392034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
141, 18
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chr1:85029073-85028721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 129
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chr1:89350084-89349734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 252
               

               
Conread position:
               
188-558
               

               
Cow position:
               
chr1:19466170-19465814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
198, 27
               

               
Conread position:
               
188-567
               

               
Cow position:
               
chr1:84255886-84255496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 221
               

               
Conread position:
               
188-568
               

               
Cow position:
               
chr1:34159955-34159576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 127
               

               
Conread position:
               
189-387
               

               
Cow position:
               
chr1:78066419-78066618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
151, 128
               

               
Conread position:
               
189-389
               

               
Cow position:
               
chr1:49824946-49825150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
92, 198
               

               
Conread position:
               
189-458
               

               
Cow position:
               
chr1:17196509-17196783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
143, 244
               

               
Conread position:
               
189-470
               

               
Cow position:
               
chr1:95558155-95557870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
189-486
               

               
Cow position:
               
chr1:60281491-60281188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
189-537
               

               
Cow position:
               
chr1:102785071-102784731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 32
               

               
Conread position:
               
189-550
               

               
Cow position:
               
chr1:5135591-5135931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
7, 117
               

               
Conread position:
               
189-550
               

               
Cow position:
               
chr1:82936479-82936822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
189-550
               

               
Cow position:
               
chr1:94226436-94226788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
8, 48
               

               
Conread position:
               
189-550
               

               
Cow position:
               
chr1:99642251-99642610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
188, 111
               

               
Conread position:
               
190-552
               

               
Cow position:
               
chr1:77099430-77099782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
192-533
               

               
Cow position:
               
chr1:37309404-37309736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
216, 140
               

               
Conread position:
               
192-550
               

               
Cow position:
               
chr1:69539806-69539459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
188, 138
               

               
Conread position:
               
192-555
               

               
Cow position:
               
chr1:82337665-82338030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
127, 66
               

               
Conread position:
               
193-552
               

               
Cow position:
               
chr1:37706863-37707211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 80
               

               
Conread position:
               
194-443
               

               
Cow position:
               
chr1:89230118-89230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
136, 64
               

               
Conread position:
               
194-550
               

               
Cow position:
               
chr1:64678807-64678457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
195-567
               

               
Cow position:
               
chr1:10063869-10064238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
148, 62
               

               
Conread position:
               
196-384
               

               
Cow position:
               
chr1:52467414-52467225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
130, 58
               

               
Conread position:
               
196-412
               

               
Cow position:
               
chr1:6752120-6752336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
80, 92
               

               
Conread position:
               
196-456
               

               
Cow position:
               
chr1:64572626-64572361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
196-465
               

               
Cow position:
               
chr1:38401910-38401631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
56, 74
               

               
Conread position:
               
196-478
               

               
Cow position:
               
chr1:12978793-12978506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 79
               

               
Conread position:
               
196-533
               

               
Cow position:
               
chr1:66430402-66430072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
178, 87
               

               
Conread position:
               
196-550
               

               
Cow position:
               
chr1:42873839-42874187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 176
               

               
Conread position:
               
196-550
               

               
Cow position:
               
chr1:45288759-45289113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 234
               

               
Conread position:
               
196-552
               

               
Cow position:
               
chr1:97954357-97954690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 127
               

               
Conread position:
               
197-552
               

               
Cow position:
               
chr1:41735510-41735867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
131, 42
               

               
Conread position:
               
198-550
               

               
Cow position:
               
chr1:49269255-49268901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
29, 18
               

               
Conread position:
               
200-411
               

               
Cow position:
               
chr1:65028641-65028422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
200-552
               

               
Cow position:
               
chr1:3720337-3720668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
23, 17
               

               
Conread position:
               
202-513
               

               
Cow position:
               
chr1:101867454-101867150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
202-547
               

               
Cow position:
               
chr1:56635203-56634859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
130, 111
               

               
Conread position:
               
203-365
               

               
Cow position:
               
chr1:4581226-4581390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
203-389
               

               
Cow position:
               
chr1:99793651-99793463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 60
               

               
Conread position:
               
203-513
               

               
Cow position:
               
chr1:4414105-4414413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
46, 61
               

               
Conread position:
               
203-530
               

               
Cow position:
               
chr1:62291597-62291908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
183, 63
               

               
Conread position:
               
203-536
               

               
Cow position:
               
chr1:70380039-70380374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 93
               

               
Conread position:
               
203-536
               

               
Cow position:
               
chr1:80900223-80899879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
203-538
               

               
Cow position:
               
chr1:81515336-81515009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chr1:1028737-1028388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chr1:35162514-35162164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 124
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chr1:51394522-51394179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
153, 186
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chr1:70435102-70434752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 84
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chr1:100450072-100450430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
114, 36
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chr1:81355599-81355945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 215
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chr1:81563849-81563491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 310
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chr1:88652740-88652389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 57
               

               
Conread position:
               
204-523
               

               
Cow position:
               
chr1:74955918-74956239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
127, 55
               

               
Conread position:
               
204-552
               

               
Cow position:
               
chr1:7350650-7350296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 5
               

               
Conread position:
               
205-552
               

               
Cow position:
               
chr1:19481979-19482316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 148
               

               
Conread position:
               
206-365
               

               
Cow position:
               
chr1:86912541-86912381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
206-535
               

               
Cow position:
               
chr1:31413868-31414186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
210-520
               

               
Cow position:
               
chr1:34686277-34685982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
210-547
               

               
Cow position:
               
chr1:21934076-21934409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 28
               

               
Conread position:
               
212-551
               

               
Cow position:
               
chr1:44507068-44506727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 253
               

               
Conread position:
               
215-517
               

               
Cow position:
               
chr1:1829235-1829532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-517
               

               
Cow position:
               
chr1:80363104-80363406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr1:11659739-11659403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr1:57573234-57573566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr1:64062435-64062096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr1:94212319-94211994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
160, 44
               

               
Conread position:
               
216-457
               

               
Cow position:
               
chr1:43703500-43703254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
216-465
               

               
Cow position:
               
chr1:70026254-70026505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
67, 116
               

               
Conread position:
               
216-472
               

               
Cow position:
               
chr1:75142088-75141834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
195, 121
               

               
Conread position:
               
216-477
               

               
Cow position:
               
chr1:87212024-87211772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
216-520
               

               
Cow position:
               
chr1:27145562-27145866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
139, 31
               

               
Conread position:
               
216-524
               

               
Cow position:
               
chr1:34771412-34771720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
111, 149
               

               
Conread position:
               
216-526
               

               
Cow position:
               
chr1:40600136-40599830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 142
               

               
Conread position:
               
216-527
               

               
Cow position:
               
chr1:3166985-3167292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 43
               

               
Conread position:
               
216-547
               

               
Cow position:
               
chr1:102266177-102266506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 43
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chr1:55146889-55146561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chr1:85774548-85774219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
91, 155
               

               
Conread position:
               
216-552
               

               
Cow position:
               
chr1:72285977-72286291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
216-552
               

               
Cow position:
               
chr1:81868638-81868969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
151, 116
               

               
Conread position:
               
216-561
               

               
Cow position:
               
chr1:51531842-51531521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
192, 68
               

               
Conread position:
               
217-476
               

               
Cow position:
               
chr1:31695119-31695384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
10, 20
               

               
Conread position:
               
217-494
               

               
Cow position:
               
chr1:677570-677291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
6, 10
               

               
Conread position:
               
217-494
               

               
Cow position:
               
chr1:40090047-40089765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
217-550
               

               
Cow position:
               
chr1:49132022-49132357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
6, 19
               

               
Conread position:
               
217-550
               

               
Cow position:
               
chr1:52170488-52170824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
19, 133
               

               
Conread position:
               
217-558
               

               
Cow position:
               
chr1:10070751-10071096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
19, 134
               

               
Conread position:
               
219-463
               

               
Cow position:
               
chr1:101946626-101946866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
167, 110
               

               
Conread position:
               
219-552
               

               
Cow position:
               
chr1:101634800-101634459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 89
               

               
Conread position:
               
222-550
               

               
Cow position:
               
chr1:64817796-64818130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
5, 111
               

               
Conread position:
               
222-567
               

               
Cow position:
               
chr1:44769025-44769366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
226-389
               

               
Cow position:
               
chr1:61560642-61560807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
105, 156
               

               
Conread position:
               
226-447
               

               
Cow position:
               
chr1:87440548-87440325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
107, 16
               

               
Conread position:
               
226-503
               

               
Cow position:
               
chr1:6788202-6788485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 103
               

               
Conread position:
               
226-511
               

               
Cow position:
               
chr1:86279494-86279211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
89, 71
               

               
Conread position:
               
226-528
               

               
Cow position:
               
chr1:98311153-98310840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 29
               

               
Conread position:
               
226-531
               

               
Cow position:
               
chr1:26943389-26943088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
156, 185
               

               
Conread position:
               
226-551
               

               
Cow position:
               
chr1:24597734-24597411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 19
               

               
Conread position:
               
226-552
               

               
Cow position:
               
chr1:83582852-83583182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 145
               

               
Conread position:
               
227-552
               

               
Cow position:
               
chr1:12870924-12871249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
7, 221
               

               
Conread position:
               
228-517
               

               
Cow position:
               
chr1:75383056-75382782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
135, 45
               

               
Conread position:
               
228-550
               

               
Cow position:
               
chr1:4374258-4374578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
117, 203
               

               
Conread position:
               
230-503
               

               
Cow position:
               
chr1:89498030-89497770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
106, 25
               

               
Conread position:
               
230-536
               

               
Cow position:
               
chr1:92963472-92963170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
231-532
               

               
Cow position:
               
chr1:53623032-53622740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
147, 53
               

               
Conread position:
               
231-534
               

               
Cow position:
               
chr1:64250976-64251278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
65, 32
               

               
Conread position:
               
231-537
               

               
Cow position:
               
chr1:68951701-68951402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
98, 21
               

               
Conread position:
               
231-550
               

               
Cow position:
               
chr1:15547546-15547229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
231-550
               

               
Cow position:
               
chr1:53520987-53520666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
149, 95
               

               
Conread position:
               
231-552
               

               
Cow position:
               
chr1:20205103-20204784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 32
               

               
Conread position:
               
231-552
               

               
Cow position:
               
chr1:46218649-46218341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
89, 53
               

               
Conread position:
               
231-552
               

               
Cow position:
               
chr1:91800524-91800850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 27
               

               
Conread position:
               
231-554
               

               
Cow position:
               
chr1:97761676-97761382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
51, 45
               

               
Conread position:
               
232-546
               

               
Cow position:
               
chr1:65665130-65664824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
89, 5
               

               
Conread position:
               
232-551
               

               
Cow position:
               
chr1:62732647-62732334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
30, 5
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chr1:91369936-91370112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
234-467
               

               
Cow position:
               
chr1:77683425-77683194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
234-494
               

               
Cow position:
               
chr1:54156662-54156927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
136, 25
               

               
Conread position:
               
234-506
               

               
Cow position:
               
chr1:51654497-51654212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
84, 245
               

               
Conread position:
               
234-507
               

               
Cow position:
               
chr1:84905990-84906267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
93, 154
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chr1:42555339-42555041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
82, 212
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chr1:77720175-77720460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
146, 22
               

               
Conread position:
               
234-537
               

               
Cow position:
               
chr1:79278374-79278671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
145, 30
               

               
Conread position:
               
234-547
               

               
Cow position:
               
chr1:72141648-72141327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
234-550
               

               
Cow position:
               
chr1:102647200-102647509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
234-558
               

               
Cow position:
               
chr1:20384550-20384870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 44
               

               
Conread position:
               
235-365
               

               
Cow position:
               
chr1:80904839-80904709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
91, 12
               

               
Conread position:
               
235-448
               

               
Cow position:
               
chr1:8128896-8129111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
91, 86
               

               
Conread position:
               
235-472
               

               
Cow position:
               
chr1:57420659-57420895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 94
               

               
Conread position:
               
235-473
               

               
Cow position:
               
chr1:97696816-97696571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
100, 24
               

               
Conread position:
               
235-484
               

               
Cow position:
               
chr1:11832707-11832944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
235-490
               

               
Cow position:
               
chr1:65904926-65905190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
92, 119
               

               
Conread position:
               
235-492
               

               
Cow position:
               
chr1:40604361-40604100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 119
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr1:76037444-76037691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
93, 104
               

               
Conread position:
               
235-494
               

               
Cow position:
               
chr1:57880712-57880979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
235-496
               

               
Cow position:
               
chr1:42398119-42398385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
92, 232
               

               
Conread position:
               
235-497
               

               
Cow position:
               
chr1:13810719-13810459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
235-499
               

               
Cow position:
               
chr1:71228164-71227885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
235-503
               

               
Cow position:
               
chr1:57945802-57946082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
235-503
               

               
Cow position:
               
chr1:61564191-61563917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
101, 209
               

               
Conread position:
               
235-503
               

               
Cow position:
               
chr1:65025347-65025061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
235-505
               

               
Cow position:
               
chr1:6867393-6867678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
235-509
               

               
Cow position:
               
chr1:51417843-51417578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
141, 66
               

               
Conread position:
               
235-510
               

               
Cow position:
               
chr1:91039102-91039378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
235-512
               

               
Cow position:
               
chr1:98619271-98619002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
151, 69
               

               
Conread position:
               
235-516
               

               
Cow position:
               
chr1:86482976-86482695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
101, 93
               

               
Conread position:
               
235-520
               

               
Cow position:
               
chr1:95687023-95687318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
235-527
               

               
Cow position:
               
chr1:81228261-81228559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
14, 219
               

               
Conread position:
               
235-530
               

               
Cow position:
               
chr1:68845418-68845708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
235-534
               

               
Cow position:
               
chr1:4539350-4539665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
79, 255
               

               
Conread position:
               
235-535
               

               
Cow position:
               
chr1:7186860-7186560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
145, 92
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:1185801-1185511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 92
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:31348365-31348669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
101, 233
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:42968247-42968546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:70297350-70297043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
92, 163
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:77620622-77620322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
13, 156
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:78809948-78809655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
145, 104
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:83982308-83982605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 80
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:92370297-92370589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
160, 82
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr1:97820757-97820457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
157, 31
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chr1:23488434-23488742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chr1:57889592-57889286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
235-538
               

               
Cow position:
               
chr1:42138930-42138636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
104, 94
               

               
Conread position:
               
235-543
               

               
Cow position:
               
chr1:85597010-85596710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
104, 50
               

               
Conread position:
               
235-546
               

               
Cow position:
               
chr1:4027935-4027625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
53, 10
               

               
Conread position:
               
235-548
               

               
Cow position:
               
chr1:13614661-13614957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
235-548
               

               
Cow position:
               
chr1:41181917-41181603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
151, 110
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr1:1165671-1165360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
182, 108
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr1:4032704-4032394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
99, 233
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr1:4339263-4338947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 91
               
UCSC Genome Browser

               
Conread position:
               
235-550
               

               
Cow position:
               
chr1:11772013-11772321 (view  custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
135, 82
               
UCSC Genome Browser

               
               
               
Conread position:
235-550

               
               
               
Cow position:
chr1:12213415-12213727 (view  custom track)

               
               
               
Alignm length:
322

               
               
               
Alignm identity:
207

               
               
               
Alignm E-value:
6e-21

               
               
               
Alignm gaps (pig, cow):
80, 44
UCSC Genome Browser

               
               
               
Conread position:
235-550

               
               
               
Cow position:
chr1:18196933-18196616 (view  custom track)

               
               
               
Alignm length:
323

               
               
               
Alignm identity:
203

               
               
               
Alignm E-value:
6e-21

               
               
               
Alignm gaps (pig, cow):
57, 49

               
               
               Conread position:235-550
               
               
               Cow position:chr1:27359009-27358703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):175, 27

               
               
               Conread position:235-550
               
               
               Cow position:chr1:32562201-32562518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 29

               
               
               Conread position:235-550
               
               
               Cow position:chr1:34300479-34300788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:227
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):147, 108

               
               
               Conread position:235-550
               
               
               Cow position:chr1:35491504-35491819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:213
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):116, 73

               
               
               Conread position:235-550
               
               
               Cow position:chr1:42360358-42360026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:231
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):89, 140

               
               
               Conread position:235-550
               
               
               Cow position:chr1:46693582-46693896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:235-550
               
               
               Cow position:chr1:50671153-50670836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:235-550
               
               
               Cow position:chr1:52753088-52753406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):81, 141

               
               
               Conread position:235-550
               
               
               Cow position:chr1:53313488-53313166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:208
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):63, 307

               
               
               Conread position:235-550
               
               
               Cow position:chr1:53423757-53423438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:235-550
               
               
               Cow position:chr1:57637429-57637132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:222
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):175, 92

               
               
               Conread position:235-550
               
               
               Cow position:chr1:61176250-61175943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):162, 87

               
               
               Conread position:235-550
               
               
               Cow position:chr1:63595982-63596300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):93, 114

               
               
               Conread position:235-550
               
               
               Cow position:chr1:64941223-64941542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:235-550
               
               
               Cow position:chr1:65529826-65530144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:220
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 23

               
               
               Conread position:235-550
               
               
               Cow position:chr1:71257394-71257723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 215

               
               
               Conread position:235-550
               
               
               Cow position:chr1:71691892-71691574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 7

               
               
               Conread position:235-550
               
               
               Cow position:chr1:71747948-71748247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:230
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):65, 74

               
               
               Conread position:235-550
               
               
               Cow position:chr1:73584338-73584642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:233
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:235-550
               
               
               Cow position:chr1:77552849-77553172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 94

               
               
               Conread position:235-550
               
               
               Cow position:chr1:80988419-80988106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):95, 23

               
               
               Conread position:235-550
               
               
               Cow position:chr1:81674139-81673824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):67, 226

               
               
               Conread position:235-550
               
               
               Cow position:chr1:82502945-82502619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:219
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:235-550
               
               
               Cow position:chr1:84283145-84282821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):106, 76

               
               
               Conread position:235-550
               
               
               Cow position:chr1:90095418-90095734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):121, 67

               
               
               Conread position:235-550
               
               
               Cow position:chr1:90604503-90604824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:235-550
               
               
               Cow position:chr1:91816699-91817014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 113

               
               
               Conread position:235-550
               
               
               Cow position:chr1:92436918-92437231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):93, 24

               
               
               Conread position:235-550
               
               
               Cow position:chr1:94875602-94875918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):99, 76

               
               
               Conread position:235-550
               
               
               Cow position:chr1:96478772-96478455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):77, 116

               
               
               Conread position:235-552
               
               
               Cow position:chr1:16839659-16839336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):44, 79

               
               
               Conread position:235-552
               
               
               Cow position:chr1:18936765-18937076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):111, 39

               
               
               Conread position:235-552
               
               
               Cow position:chr1:53595391-53595083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 30

               
               
               Conread position:235-552
               
               
               Cow position:chr1:89937296-89937605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):155, 49

               
               
               Conread position:235-558
               
               
               Cow position:chr1:96488256-96487930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 88

               
               
               Conread position:235-577
               
               
               Cow position:chr1:61735363-61735706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:229
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):101, 135

               
               
               Conread position:236-384
               
               
               Cow position:chr1:41695671-41695523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 8

               
               
               Conread position:236-480
               
               
               Cow position:chr1:24876333-24876093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:236-506
               
               
               Cow position:chr1:724811-724536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):103, 198

               
               
               Conread position:236-508
               
               
               Cow position:chr1:63138912-63138638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):137, 111

               
               
               Conread position:236-534
               
               
               Cow position:chr1:63390696-63391000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 95

               
               
               Conread position:236-536
               
               
               Cow position:chr1:101551534-101551229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 32

               
               
               Conread position:236-537
               
               
               Cow position:chr1:22295363-22295667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):81, 128

               
               
               Conread position:236-538
               
               
               Cow position:chr1:7657242-7657543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 37

               
               
               Conread position:236-550
               
               
               Cow position:chr1:42256431-42256750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):150, 304

               
               
               Conread position:236-550
               
               
               Cow position:chr1:57305890-57305592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):159, 59

               
               
               Conread position:236-550
               
               
               Cow position:chr1:82406479-82406793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):69, 22

               
               
               Conread position:236-552
               
               
               Cow position:chr1:99609439-99609124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:229
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):110, 28

               
               
               Conread position:237-516
               
               
               Cow position:chr1:21955303-21955582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):149, 63

               
               
               Conread position:237-517
               
               
               Cow position:chr1:95654643-95654925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):71, 64

               
               
               Conread position:237-535
               
               
               Cow position:chr1:51981292-51981000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):173, 106

               
               
               Conread position:237-536
               
               
               Cow position:chr1:90864223-90864528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 110

               
               
               Conread position:237-536
               
               
               Cow position:chr1:92642378-92642670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):96, 76

               
               
               Conread position:237-550
               
               
               Cow position:chr1:71136223-71135913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):68, 223

               
               
               Conread position:237-550
               
               
               Cow position:chr1:96712736-96713054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 53

               
               
               Conread position:237-551
               
               
               Cow position:chr1:35843856-35844171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):68, 137

               
               
               Conread position:237-551
               
               
               Cow position:chr1:74947047-74947358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):92, 258

               
               
               Conread position:237-552
               
               
               Cow position:chr1:6939565-6939881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:237-552
               
               
               Cow position:chr1:56229308-56229012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:237-552
               
               
               Cow position:chr1:78791234-78791549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 211

               
               
               Conread position:237-552
               
               
               Cow position:chr1:80764465-80764777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):92, 156

               
               
               Conread position:237-557
               
               
               Cow position:chr1:90423012-90423333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:222
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):82, 47

               
               
               Conread position:238-550
               
               
               Cow position:chr1:31934576-31934273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):142, 89

               
               
               Conread position:239-549
               
               
               Cow position:chr1:99807648-99807961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 17

               
               
               Conread position:239-550
               
               
               Cow position:chr1:40059501-40059186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 17

               
               
               Conread position:239-552
               
               
               Cow position:chr1:1916159-1916478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):102, 233

               
               
               Conread position:239-552
               
               
               Cow position:chr1:1991350-1991670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 55

               
               
               Conread position:239-552
               
               
               Cow position:chr1:55135904-55135594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):43, 98

               
               
               Conread position:240-550
               
               
               Cow position:chr1:28275307-28274995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 18

               
               
               Conread position:241-468
               
               
               Cow position:chr1:89508617-89508392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:241-552
               
               
               Cow position:chr1:19516323-19516648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:237
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):88, 77

               
               
               Conread position:241-552
               
               
               Cow position:chr1:95101020-95100721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):145, 59

               
               
               Conread position:242-536
               
               
               Cow position:chr1:100400127-100400430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 232

               
               
               Conread position:243-442
               
               
               Cow position:chr1:85301481-85301280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):90, 55

               
               
               Conread position:244-534
               
               
               Cow position:chr1:54199316-54199609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:244-535
               
               
               Cow position:chr1:57639452-57639748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 183

               
               
               Conread position:245-536
               
               
               Cow position:chr1:55260373-55260659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):149, 29

               
               
               Conread position:245-548
               
               
               Cow position:chr1:57395874-57396167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):141, 80

               
               
               Conread position:245-550
               
               
               Cow position:chr1:60907439-60907121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):90, 303

               
               
               Conread position:245-552
               
               
               Cow position:chr1:24235457-24235760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):134, 84

               
               
               Conread position:246-488
               
               
               Cow position:chr1:24445567-24445809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:246-492
               
               
               Cow position:chr1:74319715-74319969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 89

               
               
               Conread position:246-536
               
               
               Cow position:chr1:26729779-26729499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 83

               
               
               Conread position:247-540
               
               
               Cow position:chr1:60032539-60032830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):139, 81

               
               
               Conread position:247-550
               
               
               Cow position:chr1:61564853-61564551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 29

               
               
               Conread position:248-536
               
               
               Cow position:chr1:10655540-10655249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):132, 10

               
               
               Conread position:248-537
               
               
               Cow position:chr1:97755579-97755295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):94, 201

               
               
               Conread position:248-550
               
               
               Cow position:chr1:83083067-83082762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:207
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):104, 84

               
               
               Conread position:249-536
               
               
               Cow position:chr1:57635517-57635238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):131, 14

               
               
               Conread position:251-500
               
               
               Cow position:chr1:82443399-82443649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:252-550
               
               
               Cow position:chr1:29671470-29671764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 17

               
               
               Conread position:252-552
               
               
               Cow position:chr1:61351200-61350905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):11, 85

               
               
               Conread position:253-552
               
               
               Cow position:chr1:90641090-90640783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):81, 15

               
               
               Conread position:255-537
               
               
               Cow position:chr1:76470705-76470430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):131, 29

               
               
               Conread position:255-552
               
               
               Cow position:chr1:44155302-44155020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):27, 110

               
               
               Conread position:258-480
               
               
               Cow position:chr1:20544346-20544119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:258-550
               
               
               Cow position:chr1:56719350-56719073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):275, 5

               
               
               Conread position:260-550
               
               
               Cow position:chr1:71045802-71045515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 153

               
               
               Conread position:260-552
               
               
               Cow position:chr1:98563209-98562918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 83

               
               
               Conread position:262-550
               
               
               Cow position:chr1:98984871-98985163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):125, 66

               
               
               Conread position:262-553
               
               
               Cow position:chr1:77462408-77462122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 51

               
               
               Conread position:263-548
               
               
               Cow position:chr1:43379980-43380267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):63, 205

               
               
               Conread position:263-552
               
               
               Cow position:chr1:61723975-61724267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 185

               
               
               Conread position:263-552
               
               
               Cow position:chr1:99136386-99136672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 37

               
               
               Conread position:264-384
               
               
               Cow position:chr1:58438956-58439078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:264-500
               
               
               Cow position:chr1:70028623-70028386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):116, 67

               
               
               Conread position:264-515
               
               
               Cow position:chr1:99039312-99039560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):114, 193

               
               
               Conread position:264-533
               
               
               Cow position:chr1:95017486-95017741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:264-535
               
               
               Cow position:chr1:81319335-81319062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 50

               
               
               Conread position:264-537
               
               
               Cow position:chr1:62920211-62919947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 172

               
               
               Conread position:264-550
               
               
               Cow position:chr1:45535750-45535462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 266

               
               
               Conread position:265-537
               
               
               Cow position:chr1:55163961-55163693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):66, 102

               
               
               Conread position:266-536
               
               
               Cow position:chr1:68826863-68827134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 63

               
               
               Conread position:268-549
               
               
               Cow position:chr1:52329479-52329768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):53, 189

               
               
               Conread position:268-550
               
               
               Cow position:chr1:43839568-43839287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 82

               
               
               Conread position:268-554
               
               
               Cow position:chr1:73561608-73561894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):72, 98

               
               
               Conread position:270-533
               
               
               Cow position:chr1:76222651-76222916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):63, 194

               
               
               Conread position:270-550
               
               
               Cow position:chr1:476181-475899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):115, 58

               
               
               Conread position:270-550
               
               
               Cow position:chr1:1022765-1023047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:270-550
               
               
               Cow position:chr1:75404198-75403916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:270-550
               
               
               Cow position:chr1:84447982-84447702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 59

               
               
               Conread position:271-550
               
               
               Cow position:chr1:47009069-47008787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:198
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:275-550
               
               
               Cow position:chr1:81911565-81911840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):110, 10

               
               
               Conread position:278-550
               
               
               Cow position:chr1:8884856-8884583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):107, 24

               
               
               Conread position:278-550
               
               
               Cow position:chr1:80870144-80869866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 34

               
               
               Conread position:279-550
               
               
               Cow position:chr1:6322233-6321969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:281-484
               
               
               Cow position:chr1:80631724-80631522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):99, 46

               
               
               Conread position:281-508
               
               
               Cow position:chr1:43340587-43340823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:282-533
               
               
               Cow position:chr1:99614474-99614222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 88

               
               
               Conread position:283-454
               
               
               Cow position:chr1:100812551-100812720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 109

               
               
               Conread position:283-549
               
               
               Cow position:chr1:81472895-81472640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):103, 45

               
               
               Conread position:283-550
               
               
               Cow position:chr1:31341029-31341294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):101, 46

               
               
               Conread position:283-550
               
               
               Cow position:chr1:58419960-58419692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:192
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:283-550
               
               
               Cow position:chr1:61725090-61725353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):99, 65

               
               
               Conread position:283-551
               
               
               Cow position:chr1:33811954-33811693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 85

               
               
               Conread position:284-500
               
               
               Cow position:chr1:56674103-56674322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):102, 168

               
               
               Conread position:284-537
               
               
               Cow position:chr1:28068376-28068119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):63, 187

               
               
               Conread position:284-537
               
               
               Cow position:chr1:51818965-51818712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):62, 175

               
               
               Conread position:284-548
               
               
               Cow position:chr1:59192610-59192883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 260

               
               
               Conread position:284-550
               
               
               Cow position:chr1:99118395-99118145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):8, 44

               
               
               Conread position:284-552
               
               
               Cow position:chr1:50634380-50634648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):96, 47

               
               
               Conread position:284-597
               
               
               Cow position:chr1:8869636-8869948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 68

               
               
               Conread position:285-442
               
               
               Cow position:chr1:40069258-40069104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:285-482
               
               
               Cow position:chr1:69004420-69004218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:285-484
               
               
               Cow position:chr1:99061900-99062098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 62

               
               
               Conread position:285-493
               
               
               Cow position:chr1:24413473-24413254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:285-527
               
               
               Cow position:chr1:32244373-32244626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 141

               
               
               Conread position:285-536
               
               
               Cow position:chr1:11770270-11770522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):95, 48

               
               
               Conread position:285-536
               
               
               Cow position:chr1:84240914-84240671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:285-537
               
               
               Cow position:chr1:11873339-11873586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):95, 82

               
               
               Conread position:285-541
               
               
               Cow position:chr1:53540413-53540157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:285-552
               
               
               Cow position:chr1:30413617-30413343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):52, 165

               
               
               Conread position:285-552
               
               
               Cow position:chr1:31871451-31871178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 251

               
               
               Conread position:285-556
               
               
               Cow position:chr1:71818440-71818708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):101, 8

               
               
               Conread position:286-513
               
               
               Cow position:chr1:84170497-84170282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 25

               
               
               Conread position:286-522
               
               
               Cow position:chr1:1403460-1403687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):92, 43

               
               
               Conread position:286-527
               
               
               Cow position:chr1:98557763-98558003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):124, 41

               
               
               Conread position:286-549
               
               
               Cow position:chr1:3244871-3244611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 80

               
               
               Conread position:286-550
               
               
               Cow position:chr1:3931353-3931619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:7868059-7867793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:10499191-10498925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:12607470-12607733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):51, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:17056752-17056486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:17057884-17058150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:20714280-20714546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:24410874-24411140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:24655979-24655720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:195
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):60, 33

               
               
               Conread position:286-550
               
               
               Cow position:chr1:31406038-31405772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:31714425-31714690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:286-550
               
               
               Cow position:chr1:33366222-33365956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:57615778-57615512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:72625138-72624874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:73564273-73564539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:78070500-78070765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):99, 59

               
               
               Conread position:286-550
               
               
               Cow position:chr1:78234401-78234666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr1:90132411-90132676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:286-552
               
               
               Cow position:chr1:19776822-19776554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-582
               
               
               Cow position:chr1:3034978-3035265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:224
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):100, 41

               
               
               Conread position:286-588
               
               
               Cow position:chr1:101812253-101812554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):51, 180

               
               
               Conread position:287-501
               
               
               Cow position:chr1:83593788-83594001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):93, 37

               
               
               Conread position:287-505
               
               
               Cow position:chr1:64421351-64421133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):53, 101

               
               
               Conread position:287-507
               
               
               Cow position:chr1:81471153-81470929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:287-534
               
               
               Cow position:chr1:22448561-22448813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:287-542
               
               
               Cow position:chr1:43447808-43448058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):52, 136

               
               
               Conread position:287-550
               
               
               Cow position:chr1:4573540-4573280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):93, 46

               
               
               Conread position:287-550
               
               
               Cow position:chr1:78783568-78783306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):58, 70

               
               
               Conread position:287-552
               
               
               Cow position:chr1:5162024-5162295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:287-552
               
               
               Cow position:chr1:57247455-57247194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:287-552
               
               
               Cow position:chr1:63905454-63905716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):93, 40

               
               
               Conread position:287-567
               
               
               Cow position:chr1:56643566-56643847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:288-536
               
               
               Cow position:chr1:26929956-26930203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):90, 40

               
               
               Conread position:288-536
               
               
               Cow position:chr1:56748620-56748361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:288-537
               
               
               Cow position:chr1:25886056-25886304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 9

               
               
               Conread position:288-550
               
               
               Cow position:chr1:50679260-50679526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:193
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):50, 173

               
               
               Conread position:288-552
               
               
               Cow position:chr1:15308056-15307792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:288-552
               
               
               Cow position:chr1:71946351-71946612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:206
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):37, 138

               
               
               Conread position:289-526
               
               
               Cow position:chr1:1802159-1801921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:289-550
               
               
               Cow position:chr1:31234913-31235174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 54

               
               
               Conread position:289-552
               
               
               Cow position:chr1:3776601-3776856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):118, 32

               
               
               Conread position:289-555
               
               
               Cow position:chr1:79663655-79663911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:198
               
               
               Alignm E-value:2.8026e-45
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:290-550
               
               
               Cow position:chr1:33702136-33701880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 49

               
               
               Conread position:291-550
               
               
               Cow position:chr1:12595885-12596141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 167

               
               
               Conread position:291-550
               
               
               Cow position:chr1:22467952-22467690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:292-551
               
               
               Cow position:chr1:94404229-94403975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:293-536
               
               
               Cow position:chr1:102825803-102826042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):93, 83

               
               
               Conread position:293-539
               
               
               Cow position:chr1:4294071-4293831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 142

               
               
               Conread position:294-513
               
               
               Cow position:chr1:32013967-32013751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 51

               
               
               Conread position:295-523
               
               
               Cow position:chr1:68996192-68995956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):83, 38

               
               
               Conread position:295-535
               
               
               Cow position:chr1:95050075-95050327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):40, 182

               
               
               Conread position:295-550
               
               
               Cow position:chr1:44165098-44164836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 94

               
               
               Conread position:295-550
               
               
               Cow position:chr1:53495480-53495222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):44, 59

               
               
               Conread position:295-550
               
               
               Cow position:chr1:75967443-75967196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):91, 42

               
               
               Conread position:297-550
               
               
               Cow position:chr1:3661054-3661296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:299-550
               
               
               Cow position:chr1:21954228-21954458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:300-548
               
               
               Cow position:chr1:41004353-41004605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:300-550
               
               
               Cow position:chr1:5872960-5873211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:300-550
               
               
               Cow position:chr1:100537810-100537570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:187
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):77, 27

               
               
               Conread position:301-514
               
               
               Cow position:chr1:98372638-98372422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):77, 28

               
               
               Conread position:301-536
               
               
               Cow position:chr1:99095370-99095135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:302-534
               
               
               Cow position:chr1:8532208-8532439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):78, 147

               
               
               Conread position:302-549
               
               
               Cow position:chr1:46886097-46885855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):82, 36

               
               
               Conread position:302-549
               
               
               Cow position:chr1:61016467-61016712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):69, 27

               
               
               Conread position:302-550
               
               
               Cow position:chr1:666371-666120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):84, 159

               
               
               Conread position:302-550
               
               
               Cow position:chr1:33720122-33719874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 9

               
               
               Conread position:302-550
               
               
               Cow position:chr1:99637775-99638020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):78, 31

               
               
               Conread position:302-552
               
               
               Cow position:chr1:3751933-3752185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):27, 36

               
               
               Conread position:302-553
               
               
               Cow position:chr1:5409610-5409857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):84, 27

               
               
               Conread position:303-539
               
               
               Cow position:chr1:78689940-78689702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 40

               
               
               Conread position:305-489
               
               
               Cow position:chr1:49028593-49028780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 24

               
               
               Conread position:305-550
               
               
               Cow position:chr1:10115792-10116036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):95, 65

               
               
               Conread position:305-550
               
               
               Cow position:chr1:34000913-34000665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 32

               
               
               Conread position:305-552
               
               
               Cow position:chr1:6881222-6881467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:176
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:306-550
               
               
               Cow position:chr1:19998040-19998275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:307-550
               
               
               Cow position:chr1:82861781-82861533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:308-526
               
               
               Cow position:chr1:64938940-64939161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):14, 127

               
               
               Conread position:308-534
               
               
               Cow position:chr1:91142157-91142383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):72, 24

               
               
               Conread position:308-550
               
               
               Cow position:chr1:97284375-97284617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:309-552
               
               
               Cow position:chr1:3456868-3456630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):26, 60

               
               
               Conread position:311-550
               
               
               Cow position:chr1:68716983-68717223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:311-567
               
               
               Cow position:chr1:102425697-102425440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:312-536
               
               
               Cow position:chr1:100512594-100512367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 7

               
               
               Conread position:312-550
               
               
               Cow position:chr1:4618865-4619109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 169

               
               
               Conread position:313-550
               
               
               Cow position:chr1:81859231-81859467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):5, 76

               
               
               Conread position:314-531
               
               
               Cow position:chr1:71953070-71952864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:315-550
               
               
               Cow position:chr1:2169528-2169760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:315-550
               
               
               Cow position:chr1:69940975-69941208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):73, 12

               
               
               Conread position:315-550
               
               
               Cow position:chr1:95605008-95604771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 35

               
               
               Conread position:317-469
               
               
               Cow position:chr1:31960215-31960059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):69, 20

               
               
               Conread position:317-532
               
               
               Cow position:chr1:5062016-5061797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:318-500
               
               
               Cow position:chr1:102113118-102113301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):62, 9

               
               
               Conread position:318-534
               
               
               Cow position:chr1:78794754-78794962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):99, 11

               
               
               Conread position:318-553
               
               
               Cow position:chr1:71796925-71797146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):224, 11

               
               
               Conread position:319-526
               
               
               Cow position:chr1:86614847-86614643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:320-550
               
               
               Cow position:chr1:26159441-26159672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 214

               
               
               Conread position:321-526
               
               
               Cow position:chr1:84116382-84116183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:321-533
               
               
               Cow position:chr1:7800598-7800383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 11

               
               
               Conread position:321-552
               
               
               Cow position:chr1:25184119-25183883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:322-536
               
               
               Cow position:chr1:9443862-9444078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:322-548
               
               
               Cow position:chr1:87216446-87216223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 139

               
               
               Conread position:322-549
               
               
               Cow position:chr1:81179986-81180219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):44, 219

               
               
               Conread position:322-550
               
               
               Cow position:chr1:61149562-61149773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:322-552
               
               
               Cow position:chr1:49131130-49131364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):58, 184

               
               
               Conread position:322-553
               
               
               Cow position:chr1:58882035-58882253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:323-536
               
               
               Cow position:chr1:9593173-9593388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:323-536
               
               
               Cow position:chr1:14098776-14098565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:323-550
               
               
               Cow position:chr1:52354428-52354655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 10

               
               
               Conread position:323-552
               
               
               Cow position:chr1:11021013-11020793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:323-552
               
               
               Cow position:chr1:97619852-97620082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 214

               
               
               Conread position:325-558
               
               
               Cow position:chr1:14560961-14561197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):55, 230

               
               
               Conread position:326-543
               
               
               Cow position:chr1:49839490-49839273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):11, 91

               
               
               Conread position:327-530
               
               
               Cow position:chr1:61385861-61385653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:327-534
               
               
               Cow position:chr1:39112925-39112721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:327-550
               
               
               Cow position:chr1:87888382-87888162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:327-552
               
               
               Cow position:chr1:26688493-26688720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 150

               
               
               Conread position:327-552
               
               
               Cow position:chr1:28567451-28567680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 207

               
               
               Conread position:327-552
               
               
               Cow position:chr1:92551157-92551377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:328-495
               
               
               Cow position:chr1:89083090-89082920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):58, 130

               
               
               Conread position:328-537
               
               
               Cow position:chr1:15311849-15311639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:328-555
               
               
               Cow position:chr1:51836551-51836326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:329-548
               
               
               Cow position:chr1:37646025-37646239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:329-549
               
               
               Cow position:chr1:70282915-70282696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 129

               
               
               Conread position:329-552
               
               
               Cow position:chr1:7142868-7143091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 138

               
               
               Conread position:329-552
               
               
               Cow position:chr1:20422225-20422449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 59

               
               
               Conread position:329-552
               
               
               Cow position:chr1:67014360-67014142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:330-579
               
               
               Cow position:chr1:95327173-95327429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:331-543
               
               
               Cow position:chr1:35170311-35170101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 141

               
               
               Conread position:331-550
               
               
               Cow position:chr1:23624141-23623919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 18

               
               
               Conread position:331-554
               
               
               Cow position:chr1:56073483-56073706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:331-558
               
               
               Cow position:chr1:56408595-56408364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):6, 207

               
               
               Conread position:332-536
               
               
               Cow position:chr1:85361836-85361627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:333-534
               
               
               Cow position:chr1:30882358-30882542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:333-536
               
               
               Cow position:chr1:32631436-32631238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):84, 32

               
               
               Conread position:333-541
               
               
               Cow position:chr1:54162832-54163043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):53, 123

               
               
               Conread position:333-547
               
               
               Cow position:chr1:102468991-102469202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:333-550
               
               
               Cow position:chr1:46939883-46940102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):13, 139

               
               
               Conread position:333-550
               
               
               Cow position:chr1:52414987-52415199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):137, 26

               
               
               Conread position:333-552
               
               
               Cow position:chr1:25793460-25793682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):53, 203

               
               
               Conread position:334-537
               
               
               Cow position:chr1:53410942-53411139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 30

               
               
               Conread position:334-550
               
               
               Cow position:chr1:29379710-29379915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:335-534
               
               
               Cow position:chr1:67008771-67008964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:335-550
               
               
               Cow position:chr1:98380599-98380817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):56, 109

               
               
               Conread position:336-537
               
               
               Cow position:chr1:73522176-73522373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:336-539
               
               
               Cow position:chr1:98790604-98790406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:336-541
               
               
               Cow position:chr1:57155434-57155635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):74, 55

               
               
               Conread position:336-552
               
               
               Cow position:chr1:85783496-85783284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):44, 125

               
               
               Conread position:337-550
               
               
               Cow position:chr1:731971-732165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:337-550
               
               
               Cow position:chr1:19144954-19145161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):61, 92

               
               
               Conread position:337-550
               
               
               Cow position:chr1:20288089-20287877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):27, 193

               
               
               Conread position:337-550
               
               
               Cow position:chr1:57698477-57698696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):27, 61

               
               
               Conread position:338-550
               
               
               Cow position:chr1:98708410-98708202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:339-549
               
               
               Cow position:chr1:23633942-23634139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:339-550
               
               
               Cow position:chr1:101547064-101547282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):47, 196

               
               
               Conread position:343-550
               
               
               Cow position:chr1:89395566-89395351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):37, 199

               
               
               Conread position:348-547
               
               
               Cow position:chr1:86484925-86484717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):34, 191

               
               
               Conread position:348-558
               
               
               Cow position:chr1:71325288-71325496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):34, 11

               
               
               Conread position:349-550
               
               
               Cow position:chr1:97806747-97806552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 123

               
               
               Conread position:354-550
               
               
               Cow position:chr1:44136512-44136702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:355-533
               
               
               Cow position:chr1:56711666-56711847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 100

               
               
               Conread position:355-550
               
               
               Cow position:chr1:97502665-97502465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:359-535
               
               
               Cow position:chr1:39702770-39702603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 59

               
               
               Conread position:364-536
               
               
               Cow position:chr1:84786719-84786542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:369-534
               
               
               Cow position:chr1:67290801-67290639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 18

               
               
               Conread position:370-552
               
               
               Cow position:chr1:13456083-13455901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:371-525
               
               
               Cow position:chr1:77647998-77648156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 67

               
               
               Conread position:374-550
               
               
               Cow position:chr1:23905932-23905755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:376-516
               
               
               Cow position:chr1:51044542-51044402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:376-567
               
               
               Cow position:chr1:5990840-5990657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:377-514
               
               
               Cow position:chr1:21500521-21500656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:377-533
               
               
               Cow position:chr1:43893852-43893700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):128, 39

               
               
               Conread position:377-536
               
               
               Cow position:chr1:92010245-92010085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:377-537
               
               
               Cow position:chr1:36613348-36613504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:377-550
               
               
               Cow position:chr1:3757883-3757712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 77

               
               
               Conread position:377-550
               
               
               Cow position:chr1:9869921-9870096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:377-550
               
               
               Cow position:chr1:30504398-30504231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:377-550
               
               
               Cow position:chr1:74013332-74013507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):33, 160

               
               
               Conread position:377-552
               
               
               Cow position:chr1:40062379-40062206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):7, 19

               
               
               Conread position:377-552
               
               
               Cow position:chr1:55686290-55686461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:378-533
               
               
               Cow position:chr1:88970985-88970834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 67

               
               
               Conread position:378-535
               
               
               Cow position:chr1:26201145-26200993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:378-537
               
               
               Cow position:chr1:99543123-99543278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:378-550
               
               
               Cow position:chr1:21093018-21092851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:378-550
               
               
               Cow position:chr1:22628712-22628879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):39, 79

               
               
               Conread position:378-550
               
               
               Cow position:chr1:25281751-25281916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:378-550
               
               
               Cow position:chr1:33717154-33716981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):32, 158

               
               
               Conread position:378-550
               
               
               Cow position:chr1:67916963-67916796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):32, 70

               
               
               Conread position:378-550
               
               
               Cow position:chr1:68282728-68282554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:379-518
               
               
               Cow position:chr1:99792740-99792601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:379-536
               
               
               Cow position:chr1:19545174-19545328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:379-536
               
               
               Cow position:chr1:64160265-64160112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:380-571
               
               
               Cow position:chr1:65638133-65637945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:384-552
               
               
               Cow position:chr1:95071904-95071744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:386-550
               
               
               Cow position:chr1:75093417-75093254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 146

               
               
               Conread position:387-559
               
               
               Cow position:chr1:98577394-98577226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):26, 30

               
               
               Conread position:391-552
               
               
               Cow position:chr1:58439137-58439288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:391-577
               
               
               Cow position:chr1:43822289-43822110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:392-537
               
               
               Cow position:chr1:26934624-26934770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:393-550
               
               
               Cow position:chr1:1760360-1760204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:394-533
               
               
               Cow position:chr1:92198681-92198542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:396-536
               
               
               Cow position:chr1:54484977-54484839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:396-536
               
               
               Cow position:chr1:87083577-87083437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):21, 61

               
               
               Conread position:396-537
               
               
               Cow position:chr1:60120339-60120199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:396-538
               
               
               Cow position:chr1:14649058-14649199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:396-549
               
               
               Cow position:chr1:62996402-62996253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:396-550
               
               
               Cow position:chr1:3872759-3872611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:396-568
               
               
               Cow position:chr1:32954858-32955022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:397-499
               
               
               Cow position:chr1:82513673-82513775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:398-536
               
               
               Cow position:chr1:53650800-53650661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:398-539
               
               
               Cow position:chr1:98348397-98348537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:399-525
               
               
               Cow position:chr1:5637222-5637349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):91, 16

               
               
               Conread position:399-550
               
               
               Cow position:chr1:59557634-59557482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 137

               
               
               Conread position:400-540
               
               
               Cow position:chr1:58341516-58341376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:400-559
               
               
               Cow position:chr1:99104980-99105131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:401-550
               
               
               Cow position:chr1:52510340-52510483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:401-550
               
               
               Cow position:chr1:94378935-94378792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:401-567
               
               
               Cow position:chr1:72641913-72641750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:402-536
               
               
               Cow position:chr1:85865685-85865557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:403-536
               
               
               Cow position:chr1:71716079-71715946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:403-550
               
               
               Cow position:chr1:635917-636064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 132

               
               
               Conread position:403-552
               
               
               Cow position:chr1:81579667-81579521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:404-550
               
               
               Cow position:chr1:1347924-1348064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:405-552
               
               
               Cow position:chr1:90298065-90297921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:408-537
               
               
               Cow position:chr1:4027083-4026955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:408-552
               
               
               Cow position:chr1:50765255-50765115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:409-535
               
               
               Cow position:chr1:40292067-40292193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:409-551
               
               
               Cow position:chr1:43285310-43285450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:409-552
               
               
               Cow position:chr1:57956963-57957100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:409-558
               
               
               Cow position:chr1:57981652-57981799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):145, 118

               
               
               Conread position:414-552
               
               
               Cow position:chr1:88338589-88338455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:415-550
               
               
               Cow position:chr1:71666285-71666418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:415-556
               
               
               Cow position:chr1:4278758-4278618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:416-536
               
               
               Cow position:chr1:54294769-54294889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:416-536
               
               
               Cow position:chr1:80183849-80183967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:416-537
               
               
               Cow position:chr1:2317750-2317872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:416-540
               
               
               Cow position:chr1:77168844-77168720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):112, 46

               
               
               Conread position:416-540
               
               
               Cow position:chr1:79465671-79465547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:416-550
               
               
               Cow position:chr1:49181946-49181814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:416-550
               
               
               Cow position:chr1:53207805-53207935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:416-550
               
               
               Cow position:chr1:72803342-72803479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 120

               
               
               Conread position:416-550
               
               
               Cow position:chr1:88029173-88029045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:416-552
               
               
               Cow position:chr1:9437661-9437791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:416-558
               
               
               Cow position:chr1:41092979-41093119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):138, 111

               
               
               Conread position:416-565
               
               
               Cow position:chr1:30041614-30041465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:416-578
               
               
               Cow position:chr1:8659539-8659380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 57

               
               
               Conread position:417-550
               
               
               Cow position:chr1:72813298-72813175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:417-550
               
               
               Cow position:chr1:95467450-95467579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:418-550
               
               
               Cow position:chr1:39718905-39718772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 117

               
               
               Conread position:418-550
               
               
               Cow position:chr1:86020176-86020307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):78, 74

               
               
               Conread position:420-552
               
               
               Cow position:chr1:41138469-41138596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:425-538
               
               
               Cow position:chr1:59019653-59019544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:425-550
               
               
               Cow position:chr1:98023515-98023635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):55, 30

               
               
               Conread position:426-558
               
               
               Cow position:chr1:1459380-1459508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:427-540
               
               
               Cow position:chr1:33081147-33081256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:427-552
               
               
               Cow position:chr1:85339008-85338886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:428-554
               
               
               Cow position:chr1:21221075-21221199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:429-549
               
               
               Cow position:chr1:76938118-76938236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:430-552
               
               
               Cow position:chr1:29451750-29451632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:431-537
               
               
               Cow position:chr1:86340635-86340738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:431-554
               
               
               Cow position:chr1:29648528-29648648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):102, 0
Show alignments to all cow chromosomes.