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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8049M02.5
        

               
Conread position:
               
42-550
               

               
Cow position:
               
chr16:9496999-9497520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 149
               

               
Conread position:
               
44-550
               

               
Cow position:
               
chr16:46655540-46655035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 45
               

               
Conread position:
               
45-551
               

               
Cow position:
               
chr16:3634360-3633867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 20
               

               
Conread position:
               
46-559
               

               
Cow position:
               
chr16:33705055-33704542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
369
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 49
               

               
Conread position:
               
47-364
               

               
Cow position:
               
chr16:11584157-11584460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 35
               

               
Conread position:
               
47-427
               

               
Cow position:
               
chr16:8738316-8737935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
116, 40
               

               
Conread position:
               
48-500
               

               
Cow position:
               
chr16:17627177-17626731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
48-537
               

               
Cow position:
               
chr16:9973250-9973738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 31
               

               
Conread position:
               
49-537
               

               
Cow position:
               
chr16:53428508-53428017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
36, 96
               

               
Conread position:
               
50-426
               

               
Cow position:
               
chr16:23955580-23955955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 97
               

               
Conread position:
               
50-567
               

               
Cow position:
               
chr16:19003294-19003784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
345, 15
               

               
Conread position:
               
52-365
               

               
Cow position:
               
chr16:11134737-11135046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
54, 90
               

               
Conread position:
               
52-384
               

               
Cow position:
               
chr16:3114784-3114455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 20
               

               
Conread position:
               
54-548
               

               
Cow position:
               
chr16:11102570-11103071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 12
               

               
Conread position:
               
55-481
               

               
Cow position:
               
chr16:54084301-54083854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
135, 78
               

               
Conread position:
               
60-469
               

               
Cow position:
               
chr16:3304274-3303862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
64-516
               

               
Cow position:
               
chr16:7582952-7582497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
35, 21
               

               
Conread position:
               
64-526
               

               
Cow position:
               
chr16:49336452-49336002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
65-330
               

               
Cow position:
               
chr16:17460416-17460139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
14, 153
               

               
Conread position:
               
65-382
               

               
Cow position:
               
chr16:29528045-29527743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
33, 54
               

               
Conread position:
               
65-536
               

               
Cow position:
               
chr16:10029352-10028900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
158, 68
               

               
Conread position:
               
66-454
               

               
Cow position:
               
chr16:12320459-12320065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 78
               

               
Conread position:
               
66-536
               

               
Cow position:
               
chr16:18353740-18354187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 18
               

               
Conread position:
               
66-551
               

               
Cow position:
               
chr16:935222-935694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
67-452
               

               
Cow position:
               
chr16:6319432-6319043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
217, 65
               

               
Conread position:
               
67-501
               

               
Cow position:
               
chr16:591572-592018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 20
               

               
Conread position:
               
67-514
               

               
Cow position:
               
chr16:39171914-39172378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
67-535
               

               
Cow position:
               
chr16:56082128-56082594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
20, 139
               

               
Conread position:
               
67-537
               

               
Cow position:
               
chr16:13698748-13698272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
69-550
               

               
Cow position:
               
chr16:7011300-7010823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
94, 22
               

               
Conread position:
               
70-419
               

               
Cow position:
               
chr16:21761747-21762093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 63
               

               
Conread position:
               
70-534
               

               
Cow position:
               
chr16:42078619-42079075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
70-550
               

               
Cow position:
               
chr16:50282204-50282678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
5, 64
               

               
Conread position:
               
70-550
               

               
Cow position:
               
chr16:55683526-55683046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 20
               

               
Conread position:
               
70-552
               

               
Cow position:
               
chr16:27701032-27701494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 46
               

               
Conread position:
               
72-534
               

               
Cow position:
               
chr16:22841837-22842286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
255, 74
               

               
Conread position:
               
72-550
               

               
Cow position:
               
chr16:28834071-28833595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
26, 46
               

               
Conread position:
               
74-456
               

               
Cow position:
               
chr16:38243438-38243821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 10
               

               
Conread position:
               
74-477
               

               
Cow position:
               
chr16:34153344-34153755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 23
               

               
Conread position:
               
76-544
               

               
Cow position:
               
chr16:7665863-7665388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 65
               

               
Conread position:
               
78-537
               

               
Cow position:
               
chr16:47243186-47242716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
21, 66
               

               
Conread position:
               
80-472
               

               
Cow position:
               
chr16:46433104-46433499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
25, 88
               

               
Conread position:
               
81-549
               

               
Cow position:
               
chr16:7136127-7136598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
24, 61
               

               
Conread position:
               
83-550
               

               
Cow position:
               
chr16:25839826-25839364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
257, 17
               

               
Conread position:
               
83-552
               

               
Cow position:
               
chr16:56875458-56875902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
286, 50
               

               
Conread position:
               
84-534
               

               
Cow position:
               
chr16:54664585-54665036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
46, 24
               

               
Conread position:
               
86-507
               

               
Cow position:
               
chr16:11957367-11957790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
238, 9
               

               
Conread position:
               
87-514
               

               
Cow position:
               
chr16:55784534-55784974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 54
               

               
Conread position:
               
87-532
               

               
Cow position:
               
chr16:32301791-32302218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
87-550
               

               
Cow position:
               
chr16:17746058-17745587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 50
               

               
Conread position:
               
90-550
               

               
Cow position:
               
chr16:23058221-23058683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 54
               

               
Conread position:
               
90-552
               

               
Cow position:
               
chr16:20025655-20025195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 21
               

               
Conread position:
               
91-368
               

               
Cow position:
               
chr16:45294753-45294476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 32
               

               
Conread position:
               
91-378
               

               
Cow position:
               
chr16:30305608-30305891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
91-435
               

               
Cow position:
               
chr16:9905305-9904955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
14, 113
               

               
Conread position:
               
91-443
               

               
Cow position:
               
chr16:7583606-7583251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
124, 50
               

               
Conread position:
               
91-493
               

               
Cow position:
               
chr16:20205670-20205260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
72, 16
               

               
Conread position:
               
91-517
               

               
Cow position:
               
chr16:56126568-56126996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 52
               

               
Conread position:
               
91-536
               

               
Cow position:
               
chr16:48398049-48398481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
240, 50
               

               
Conread position:
               
91-537
               

               
Cow position:
               
chr16:15824233-15824678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 98
               

               
Conread position:
               
91-550
               

               
Cow position:
               
chr16:4856892-4857338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 9
               

               
Conread position:
               
91-550
               

               
Cow position:
               
chr16:16597768-16597315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
94-552
               

               
Cow position:
               
chr16:19644091-19643646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 47
               

               
Conread position:
               
95-418
               

               
Cow position:
               
chr16:17134857-17135179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 27
               

               
Conread position:
               
96-454
               

               
Cow position:
               
chr16:33198230-33198591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 191
               

               
Conread position:
               
96-537
               

               
Cow position:
               
chr16:45813495-45813932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
97-324
               

               
Cow position:
               
chr16:31149577-31149356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
97-519
               

               
Cow position:
               
chr16:52170255-52169848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 44
               

               
Conread position:
               
98-552
               

               
Cow position:
               
chr16:238467-238012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 43
               

               
Conread position:
               
100-550
               

               
Cow position:
               
chr16:8958859-8959310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
63, 32
               

               
Conread position:
               
101-505
               

               
Cow position:
               
chr16:3047144-3047550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
66, 86
               

               
Conread position:
               
101-505
               

               
Cow position:
               
chr16:4275544-4275950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
66, 86
               

               
Conread position:
               
104-469
               

               
Cow position:
               
chr16:7418568-7418212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
282, 29
               

               
Conread position:
               
108-348
               

               
Cow position:
               
chr16:12010289-12010047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
110-550
               

               
Cow position:
               
chr16:54579354-54578920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 31
               

               
Conread position:
               
110-552
               

               
Cow position:
               
chr16:23564327-23563887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
53, 116
               

               
Conread position:
               
110-552
               

               
Cow position:
               
chr16:23681550-23681123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
219, 31
               

               
Conread position:
               
111-308
               

               
Cow position:
               
chr16:34204877-34205070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
111-537
               

               
Cow position:
               
chr16:13447457-13447023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
111-551
               

               
Cow position:
               
chr16:33646203-33645766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
112-552
               

               
Cow position:
               
chr16:51598426-51598851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 30
               

               
Conread position:
               
121-536
               

               
Cow position:
               
chr16:18679367-18678962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 111
               

               
Conread position:
               
134-535
               

               
Cow position:
               
chr16:13689839-13689429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 320
               

               
Conread position:
               
134-536
               

               
Cow position:
               
chr16:51709973-51710363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 36
               

               
Conread position:
               
135-527
               

               
Cow position:
               
chr16:11105722-11105323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
138-526
               

               
Cow position:
               
chr16:50289313-50288932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
138-552
               

               
Cow position:
               
chr16:43276184-43275773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
141-457
               

               
Cow position:
               
chr16:17945680-17945362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 42
               

               
Conread position:
               
142-459
               

               
Cow position:
               
chr16:35297237-35296911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
142-536
               

               
Cow position:
               
chr16:7702677-7702296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
276, 50
               

               
Conread position:
               
142-554
               

               
Cow position:
               
chr16:6378969-6379363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
144-550
               

               
Cow position:
               
chr16:18141176-18141576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
16, 44
               

               
Conread position:
               
145-340
               

               
Cow position:
               
chr16:17291865-17292061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
13, 59
               

               
Conread position:
               
145-373
               

               
Cow position:
               
chr16:496221-496447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
194, 47
               

               
Conread position:
               
145-468
               

               
Cow position:
               
chr16:7550125-7549797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
45, 95
               

               
Conread position:
               
145-534
               

               
Cow position:
               
chr16:5727085-5726693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
179, 48
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chr16:5741408-5741008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chr16:19408370-19408760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 180
               

               
Conread position:
               
146-392
               

               
Cow position:
               
chr16:7980948-7980703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
16, 12
               

               
Conread position:
               
146-515
               

               
Cow position:
               
chr16:14758891-14758516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
51, 40
               

               
Conread position:
               
147-469
               

               
Cow position:
               
chr16:52133367-52133687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
233, 25
               

               
Conread position:
               
147-552
               

               
Cow position:
               
chr16:18427339-18426936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 16
               

               
Conread position:
               
147-552
               

               
Cow position:
               
chr16:22804441-22804830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
34, 166
               

               
Conread position:
               
149-536
               

               
Cow position:
               
chr16:33054330-33054699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 37
               

               
Conread position:
               
149-552
               

               
Cow position:
               
chr16:7499201-7498820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
231, 38
               

               
Conread position:
               
149-552
               

               
Cow position:
               
chr16:31122097-31122499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 152
               

               
Conread position:
               
150-552
               

               
Cow position:
               
chr16:37669584-37669977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 252
               

               
Conread position:
               
152-385
               

               
Cow position:
               
chr16:53792671-53792902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
81, 40
               

               
Conread position:
               
152-526
               

               
Cow position:
               
chr16:43105367-43105738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 40
               

               
Conread position:
               
152-550
               

               
Cow position:
               
chr16:38905089-38905473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
152-550
               

               
Cow position:
               
chr16:39278919-39279325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 15
               

               
Conread position:
               
153-374
               

               
Cow position:
               
chr16:17135871-17135655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
153-533
               

               
Cow position:
               
chr16:13611304-13611681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 168
               

               
Conread position:
               
153-552
               

               
Cow position:
               
chr16:29608660-29608269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
154-456
               

               
Cow position:
               
chr16:12274214-12273909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
174, 65
               

               
Conread position:
               
154-494
               

               
Cow position:
               
chr16:41696944-41697284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 175
               

               
Conread position:
               
154-538
               

               
Cow position:
               
chr16:4399887-4399485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
155-363
               

               
Cow position:
               
chr16:31880618-31880824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
155-371
               

               
Cow position:
               
chr16:44239560-44239334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 32
               

               
Conread position:
               
155-469
               

               
Cow position:
               
chr16:10592577-10592263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
155-537
               

               
Cow position:
               
chr16:4059500-4059123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 32
               

               
Conread position:
               
155-550
               

               
Cow position:
               
chr16:15960145-15960541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 37
               

               
Conread position:
               
155-576
               

               
Cow position:
               
chr16:24023151-24023571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
37, 60
               

               
Conread position:
               
156-472
               

               
Cow position:
               
chr16:31348622-31348942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
156-536
               

               
Cow position:
               
chr16:4192290-4192655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
255, 48
               

               
Conread position:
               
157-389
               

               
Cow position:
               
chr16:21040171-21039941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
40, 26
               

               
Conread position:
               
157-394
               

               
Cow position:
               
chr16:33135082-33134850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
178, 102
               

               
Conread position:
               
157-550
               

               
Cow position:
               
chr16:5364046-5363645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 386
               

               
Conread position:
               
159-535
               

               
Cow position:
               
chr16:14106778-14106413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 34
               

               
Conread position:
               
159-537
               

               
Cow position:
               
chr16:11422439-11422074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 24
               

               
Conread position:
               
159-543
               

               
Cow position:
               
chr16:8193593-8193205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
159-550
               

               
Cow position:
               
chr16:13969226-13969626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
159-551
               

               
Cow position:
               
chr16:47820707-47820323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 10
               

               
Conread position:
               
160-536
               

               
Cow position:
               
chr16:53086202-53086560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
156, 19
               

               
Conread position:
               
160-552
               

               
Cow position:
               
chr16:5636726-5636340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 103
               

               
Conread position:
               
160-552
               

               
Cow position:
               
chr16:24826215-24825818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 297
               

               
Conread position:
               
161-326
               

               
Cow position:
               
chr16:15945118-15945280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
161-455
               

               
Cow position:
               
chr16:8239729-8240023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
161-534
               

               
Cow position:
               
chr16:13195199-13195566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
167, 82
               

               
Conread position:
               
162-522
               

               
Cow position:
               
chr16:48190875-48191222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
216, 35
               

               
Conread position:
               
163-535
               

               
Cow position:
               
chr16:5896554-5896185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
165, 17
               

               
Conread position:
               
163-552
               

               
Cow position:
               
chr16:4910390-4910780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 16
               

               
Conread position:
               
165-365
               

               
Cow position:
               
chr16:20824611-20824420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
165-536
               

               
Cow position:
               
chr16:22850462-22850093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
165-537
               

               
Cow position:
               
chr16:49229636-49230004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
164, 22
               

               
Conread position:
               
165-552
               

               
Cow position:
               
chr16:13306737-13307112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
166-497
               

               
Cow position:
               
chr16:424680-425011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
177, 21
               

               
Conread position:
               
166-518
               

               
Cow position:
               
chr16:24855675-24855323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
166-552
               

               
Cow position:
               
chr16:26649491-26649882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 375
               

               
Conread position:
               
167-434
               

               
Cow position:
               
chr16:19047297-19047575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 50
               

               
Conread position:
               
167-537
               

               
Cow position:
               
chr16:8522253-8522623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 52
               

               
Conread position:
               
168-550
               

               
Cow position:
               
chr16:32132638-32132282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
65, 14
               

               
Conread position:
               
169-378
               

               
Cow position:
               
chr16:40700606-40700805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
169-379
               

               
Cow position:
               
chr16:9553188-9552983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 18
               

               
Conread position:
               
169-511
               

               
Cow position:
               
chr16:53830461-53830799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
154, 46
               

               
Conread position:
               
169-527
               

               
Cow position:
               
chr16:43308428-43308795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 39
               

               
Conread position:
               
169-540
               

               
Cow position:
               
chr16:10032773-10032388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
16, 49
               

               
Conread position:
               
169-540
               

               
Cow position:
               
chr16:51247065-51246724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
211, 18
               

               
Conread position:
               
169-551
               

               
Cow position:
               
chr16:35623116-35623498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 87
               

               
Conread position:
               
169-552
               

               
Cow position:
               
chr16:39616853-39616495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
222, 18
               

               
Conread position:
               
170-365
               

               
Cow position:
               
chr16:31561885-31561688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
150, 23
               

               
Conread position:
               
170-459
               

               
Cow position:
               
chr16:25387105-25386819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 90
               

               
Conread position:
               
170-490
               

               
Cow position:
               
chr16:6887317-6887641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
25, 42
               

               
Conread position:
               
170-496
               

               
Cow position:
               
chr16:45678109-45677780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
170, 24
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr16:11615112-11615463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 176
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr16:11806802-11806446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 17
               

               
Conread position:
               
170-536
               

               
Cow position:
               
chr16:38663577-38663947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 62
               

               
Conread position:
               
170-537
               

               
Cow position:
               
chr16:956753-957134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
18, 32
               

               
Conread position:
               
170-537
               

               
Cow position:
               
chr16:29557495-29557867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 100
               

               
Conread position:
               
170-538
               

               
Cow position:
               
chr16:594091-594468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
59, 34
               

               
Conread position:
               
170-538
               

               
Cow position:
               
chr16:49169251-49169620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 17
               

               
Conread position:
               
170-541
               

               
Cow position:
               
chr16:8811966-8812327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 17
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chr16:37117207-37116827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr16:14242499-14242126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 27
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr16:35195480-35195859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr16:35343340-35343724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr16:38708705-38709075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 119
               

               
Conread position:
               
170-552
               

               
Cow position:
               
chr16:53553585-53553966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
171-467
               

               
Cow position:
               
chr16:20069960-20069658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
156, 7
               

               
Conread position:
               
171-513
               

               
Cow position:
               
chr16:8068695-8069030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
39, 16
               

               
Conread position:
               
171-536
               

               
Cow position:
               
chr16:33588791-33588433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
171-536
               

               
Cow position:
               
chr16:46552926-46552583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
14, 142
               

               
Conread position:
               
171-550
               

               
Cow position:
               
chr16:35188378-35188008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
209, 16
               

               
Conread position:
               
172-384
               

               
Cow position:
               
chr16:34220314-34220101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
172-457
               

               
Cow position:
               
chr16:22380224-22380515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
82, 107
               

               
Conread position:
               
172-519
               

               
Cow position:
               
chr16:54679792-54679449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 28
               

               
Conread position:
               
172-539
               

               
Cow position:
               
chr16:33235034-33235374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
360, 91
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chr16:13578733-13579090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chr16:33226407-33226779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 85
               

               
Conread position:
               
172-552
               

               
Cow position:
               
chr16:45139795-45139421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 20
               

               
Conread position:
               
174-330
               

               
Cow position:
               
chr16:1582795-1582954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
174-406
               

               
Cow position:
               
chr16:19052765-19052527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 175
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr16:9985263-9985615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 209
               

               
Conread position:
               
174-525
               

               
Cow position:
               
chr16:22773104-22772744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
151, 12
               

               
Conread position:
               
174-530
               

               
Cow position:
               
chr16:50688647-50688290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
200, 28
               

               
Conread position:
               
174-547
               

               
Cow position:
               
chr16:51112754-51113123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr16:48095638-48096010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 18
               

               
Conread position:
               
174-550
               

               
Cow position:
               
chr16:51869764-51869391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
174-551
               

               
Cow position:
               
chr16:51501059-51500684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
16, 80
               

               
Conread position:
               
174-552
               

               
Cow position:
               
chr16:39474023-39474387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 153
               

               
Conread position:
               
174-552
               

               
Cow position:
               
chr16:40562357-40561977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 13
               

               
Conread position:
               
175-370
               

               
Cow position:
               
chr16:42977591-42977394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 12
               

               
Conread position:
               
175-383
               

               
Cow position:
               
chr16:16933246-16933037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 41
               

               
Conread position:
               
175-489
               

               
Cow position:
               
chr16:17289073-17288753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
176-533
               

               
Cow position:
               
chr16:23729787-23730171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
176-536
               

               
Cow position:
               
chr16:5654626-5654273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
176-549
               

               
Cow position:
               
chr16:37452486-37452862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
18, 292
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chr16:42633616-42633995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 43
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chr16:45610113-45609739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
12, 45
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chr16:47518970-47518603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
37, 11
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chr16:48086742-48087117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 49
               

               
Conread position:
               
177-476
               

               
Cow position:
               
chr16:56590632-56590332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
8, 40
               

               
Conread position:
               
177-550
               

               
Cow position:
               
chr16:48494431-48494803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 19
               

               
Conread position:
               
178-335
               

               
Cow position:
               
chr16:21370066-21370220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
178-472
               

               
Cow position:
               
chr16:31078969-31079272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
178-526
               

               
Cow position:
               
chr16:32781488-32781137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 86
               

               
Conread position:
               
178-552
               

               
Cow position:
               
chr16:42241994-42242367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 64
               

               
Conread position:
               
178-552
               

               
Cow position:
               
chr16:48340572-48340941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 14
               

               
Conread position:
               
179-535
               

               
Cow position:
               
chr16:7076035-7075684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
153, 81
               

               
Conread position:
               
180-406
               

               
Cow position:
               
chr16:45122155-45121930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
156, 7
               

               
Conread position:
               
180-494
               

               
Cow position:
               
chr16:45554563-45554245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
102, 7
               

               
Conread position:
               
180-501
               

               
Cow position:
               
chr16:14685270-14685589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
50, 7
               

               
Conread position:
               
180-511
               

               
Cow position:
               
chr16:12634005-12633683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 12
               

               
Conread position:
               
180-512
               

               
Cow position:
               
chr16:41530178-41530503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
199, 146
               

               
Conread position:
               
180-520
               

               
Cow position:
               
chr16:42444279-42443935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 150
               

               
Conread position:
               
180-522
               

               
Cow position:
               
chr16:13990095-13989762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 12
               

               
Conread position:
               
180-533
               

               
Cow position:
               
chr16:31117495-31117850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
148, 12
               

               
Conread position:
               
180-534
               

               
Cow position:
               
chr16:37062276-37062628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
131, 78
               

               
Conread position:
               
180-536
               

               
Cow position:
               
chr16:53813533-53813894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
155, 43
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chr16:5257118-5256756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 210
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chr16:29655445-29655078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 7
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chr16:23822911-23823268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
43, 7
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chr16:39394690-39394325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
180-554
               

               
Cow position:
               
chr16:30715627-30715241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 232
               

               
Conread position:
               
181-406
               

               
Cow position:
               
chr16:22207196-22206967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
141, 6
               

               
Conread position:
               
181-420
               

               
Cow position:
               
chr16:54226481-54226721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
148, 6
               

               
Conread position:
               
181-452
               

               
Cow position:
               
chr16:32969958-32970233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
181-485
               

               
Cow position:
               
chr16:8076383-8076692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 6
               

               
Conread position:
               
181-537
               

               
Cow position:
               
chr16:3614860-3614512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
157, 6
               

               
Conread position:
               
181-539
               

               
Cow position:
               
chr16:26676567-26676928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
42, 12
               

               
Conread position:
               
181-555
               

               
Cow position:
               
chr16:26372831-26373203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 13
               

               
Conread position:
               
181-561
               

               
Cow position:
               
chr16:7152053-7152430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
145, 42
               

               
Conread position:
               
182-343
               

               
Cow position:
               
chr16:12133980-12133818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
182-435
               

               
Cow position:
               
chr16:41578346-41578088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
144, 138
               

               
Conread position:
               
182-530
               

               
Cow position:
               
chr16:48956917-48956568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 10
               

               
Conread position:
               
182-541
               

               
Cow position:
               
chr16:25170512-25170150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 12
               

               
Conread position:
               
182-552
               

               
Cow position:
               
chr16:49126067-49126432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 107
               

               
Conread position:
               
184-550
               

               
Cow position:
               
chr16:23472866-23472503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
138, 19
               

               
Conread position:
               
186-536
               

               
Cow position:
               
chr16:23738295-23737948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
143, 7
               

               
Conread position:
               
187-468
               

               
Cow position:
               
chr16:14974429-14974703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
187, 71
               

               
Conread position:
               
187-469
               

               
Cow position:
               
chr16:689818-689540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
143, 103
               

               
Conread position:
               
187-494
               

               
Cow position:
               
chr16:6344327-6344632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
140, 71
               

               
Conread position:
               
187-505
               

               
Cow position:
               
chr16:17982028-17982348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
187-526
               

               
Cow position:
               
chr16:20633761-20634103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
65, 111
               

               
Conread position:
               
187-526
               

               
Cow position:
               
chr16:48493295-48492958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
138, 273
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chr16:17143049-17142698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 33
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chr16:30036876-30037229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 96
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chr16:48385288-48385637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 48
               

               
Conread position:
               
187-537
               

               
Cow position:
               
chr16:43505696-43506034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chr16:18206074-18205724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
193, 121
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chr16:24702964-24702605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
143, 27
               

               
Conread position:
               
187-553
               

               
Cow position:
               
chr16:4626276-4626647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 163
               

               
Conread position:
               
187-577
               

               
Cow position:
               
chr16:42340311-42339930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
188-330
               

               
Cow position:
               
chr16:32893742-32893600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
188-412
               

               
Cow position:
               
chr16:17903531-17903764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
188-415
               

               
Cow position:
               
chr16:40514368-40514596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
198, 141
               

               
Conread position:
               
188-436
               

               
Cow position:
               
chr16:54709926-54710172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 43
               

               
Conread position:
               
188-449
               

               
Cow position:
               
chr16:47964705-47964967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
192, 150
               

               
Conread position:
               
188-501
               

               
Cow position:
               
chr16:17282772-17282467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
188-534
               

               
Cow position:
               
chr16:15809092-15808738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
97, 113
               

               
Conread position:
               
188-537
               

               
Cow position:
               
chr16:40333212-40333561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chr16:22919581-22919254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
147, 121
               

               
Conread position:
               
188-552
               

               
Cow position:
               
chr16:7505198-7504851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
145, 52
               

               
Conread position:
               
188-552
               

               
Cow position:
               
chr16:39165353-39164997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
111, 104
               

               
Conread position:
               
189-418
               

               
Cow position:
               
chr16:55233794-55233574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
147, 73
               

               
Conread position:
               
189-523
               

               
Cow position:
               
chr16:52636273-52636604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
193, 14
               

               
Conread position:
               
189-550
               

               
Cow position:
               
chr16:3246092-3246439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
149, 180
               

               
Conread position:
               
189-550
               

               
Cow position:
               
chr16:14754210-14754569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
189-552
               

               
Cow position:
               
chr16:11791123-11790764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 74
               

               
Conread position:
               
192-527
               

               
Cow position:
               
chr16:18757729-18758070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
144, 108
               

               
Conread position:
               
193-536
               

               
Cow position:
               
chr16:53048661-53048316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 22
               

               
Conread position:
               
193-550
               

               
Cow position:
               
chr16:8315085-8315421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
69, 23
               

               
Conread position:
               
194-351
               

               
Cow position:
               
chr16:7626267-7626111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
196-383
               

               
Cow position:
               
chr16:42241153-42240968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
107, 83
               

               
Conread position:
               
196-479
               

               
Cow position:
               
chr16:5836691-5836404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
85, 198
               

               
Conread position:
               
196-496
               

               
Cow position:
               
chr16:44584333-44584623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
37, 27
               

               
Conread position:
               
196-527
               

               
Cow position:
               
chr16:14125242-14124931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
196-552
               

               
Cow position:
               
chr16:27659640-27659975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
84, 165
               

               
Conread position:
               
196-567
               

               
Cow position:
               
chr16:53627322-53627687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
190, 256
               

               
Conread position:
               
197-537
               

               
Cow position:
               
chr16:36203514-36203851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 12
               

               
Conread position:
               
203-365
               

               
Cow position:
               
chr16:50370693-50370532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
203-384
               

               
Cow position:
               
chr16:16571011-16570832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
133, 64
               

               
Conread position:
               
203-389
               

               
Cow position:
               
chr16:32807194-32807379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
135, 39
               

               
Conread position:
               
203-463
               

               
Cow position:
               
chr16:42345514-42345769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
179, 60
               

               
Conread position:
               
203-518
               

               
Cow position:
               
chr16:45676764-45677069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 79
               

               
Conread position:
               
203-536
               

               
Cow position:
               
chr16:570821-571152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 75
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chr16:52834789-52835129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
133, 181
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chr16:4698889-4699218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
9, 17
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chr16:48006394-48006740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
204-496
               

               
Cow position:
               
chr16:10352981-10352672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
204-536
               

               
Cow position:
               
chr16:22692587-22692255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
26, 12
               

               
Conread position:
               
206-536
               

               
Cow position:
               
chr16:48369856-48370183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 57
               

               
Conread position:
               
207-339
               

               
Cow position:
               
chr16:19815153-19815283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
207-548
               

               
Cow position:
               
chr16:16096831-16096494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
209-537
               

               
Cow position:
               
chr16:52790147-52789825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 33
               

               
Conread position:
               
212-545
               

               
Cow position:
               
chr16:11008434-11008098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
215-429
               

               
Cow position:
               
chr16:39683014-39683240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
8, 12
               

               
Conread position:
               
215-469
               

               
Cow position:
               
chr16:34256951-34257212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 106
               

               
Conread position:
               
215-506
               

               
Cow position:
               
chr16:38787347-38787055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-511
               

               
Cow position:
               
chr16:8065801-8066091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-519
               

               
Cow position:
               
chr16:54673327-54673019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 8
               

               
Conread position:
               
215-533
               

               
Cow position:
               
chr16:10552596-10552918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-535
               

               
Cow position:
               
chr16:53931888-53932205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr16:35205648-35205327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
215-536
               

               
Cow position:
               
chr16:42217603-42217925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr16:24128792-24128454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
55, 69
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr16:32906339-32906006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr16:35243535-35243207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr16:45702885-45703223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-551
               

               
Cow position:
               
chr16:47919967-47920298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
215-559
               

               
Cow position:
               
chr16:5725554-5725214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
114, 199
               

               
Conread position:
               
216-500
               

               
Cow position:
               
chr16:52275043-52275329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 249
               

               
Conread position:
               
216-513
               

               
Cow position:
               
chr16:12060502-12060201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 59
               

               
Conread position:
               
216-520
               

               
Cow position:
               
chr16:8322896-8323205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
115, 273
               

               
Conread position:
               
216-520
               

               
Cow position:
               
chr16:47643500-47643200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
115, 137
               

               
Conread position:
               
216-532
               

               
Cow position:
               
chr16:27261865-27262176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
122, 42
               

               
Conread position:
               
216-538
               

               
Cow position:
               
chr16:39513990-39514315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 39
               

               
Conread position:
               
216-547
               

               
Cow position:
               
chr16:35758288-35757966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
326, 121
               

               
Conread position:
               
216-549
               

               
Cow position:
               
chr16:11774962-11775297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chr16:820336-820004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 235
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chr16:28922859-28922542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
162, 68
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chr16:29766412-29766097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
17, 64
               

               
Conread position:
               
216-556
               

               
Cow position:
               
chr16:32327744-32327398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
137, 208
               

               
Conread position:
               
217-553
               

               
Cow position:
               
chr16:11859372-11859711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 114
               

               
Conread position:
               
221-550
               

               
Cow position:
               
chr16:18402768-18402449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
114, 229
               

               
Conread position:
               
221-551
               

               
Cow position:
               
chr16:52889331-52889658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
222-550
               

               
Cow position:
               
chr16:15416425-15416756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
222-550
               

               
Cow position:
               
chr16:42161310-42161641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
223-532
               

               
Cow position:
               
chr16:16402248-16402558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
157, 55
               

               
Conread position:
               
224-513
               

               
Cow position:
               
chr16:22860689-22860971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
225-550
               

               
Cow position:
               
chr16:50873093-50873424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 100
               

               
Conread position:
               
225-552
               

               
Cow position:
               
chr16:35937414-35937087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
226-533
               

               
Cow position:
               
chr16:33790762-33791076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
226-533
               

               
Cow position:
               
chr16:56854006-56853721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
226-534
               

               
Cow position:
               
chr16:16236049-16236361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
55, 130
               

               
Conread position:
               
226-550
               

               
Cow position:
               
chr16:25936684-25936361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
23, 61
               

               
Conread position:
               
226-552
               

               
Cow position:
               
chr16:56831665-56831989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
182, 99
               

               
Conread position:
               
228-550
               

               
Cow position:
               
chr16:45731313-45731619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
99, 156
               

               
Conread position:
               
229-536
               

               
Cow position:
               
chr16:45047563-45047858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
231-471
               

               
Cow position:
               
chr16:45645617-45645858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
231-550
               

               
Cow position:
               
chr16:50417626-50417935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
232-527
               

               
Cow position:
               
chr16:12360903-12361198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
26, 219
               

               
Conread position:
               
232-550
               

               
Cow position:
               
chr16:38903389-38903681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
174, 85
               

               
Conread position:
               
233-534
               

               
Cow position:
               
chr16:47097939-47098230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
137, 25
               

               
Conread position:
               
234-422
               

               
Cow position:
               
chr16:39401946-39402123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
234-429
               

               
Cow position:
               
chr16:48146592-48146789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
25, 94
               

               
Conread position:
               
234-459
               

               
Cow position:
               
chr16:42733943-42734175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
107, 192
               

               
Conread position:
               
234-493
               

               
Cow position:
               
chr16:46627773-46628028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
70, 82
               

               
Conread position:
               
234-495
               

               
Cow position:
               
chr16:29712487-29712222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
137, 74
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chr16:8025787-8026080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chr16:13232881-13233180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chr16:53508917-53509224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
150, 29
               

               
Conread position:
               
234-550
               

               
Cow position:
               
chr16:7456394-7456713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
234-550
               

               
Cow position:
               
chr16:53891718-53892028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
116, 67
               

               
Conread position:
               
234-551
               

               
Cow position:
               
chr16:41752509-41752821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 29
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chr16:8366763-8367074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chr16:13752064-13752372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 90
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chr16:56231895-56231574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 124
               

               
Conread position:
               
234-552
               

               
Cow position:
               
chr16:56445345-56445651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 22
               

               
Conread position:
               
234-554
               

               
Cow position:
               
chr16:8279724-8280040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 34
               

               
Conread position:
               
234-576
               

               
Cow position:
               
chr16:46521957-46521631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
235-464
               

               
Cow position:
               
chr16:31269207-31268974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
69, 62
               

               
Conread position:
               
235-467
               

               
Cow position:
               
chr16:50521544-50521308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
235-469
               

               
Cow position:
               
chr16:4902655-4902417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
100, 179
               

               
Conread position:
               
235-476
               

               
Cow position:
               
chr16:7442034-7442281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
235-484
               

               
Cow position:
               
chr16:38119383-38119632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
235-493
               

               
Cow position:
               
chr16:3821595-3821341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
235-496
               

               
Cow position:
               
chr16:4981310-4981576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
73, 218
               

               
Conread position:
               
235-498
               

               
Cow position:
               
chr16:2479396-2479665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
235-505
               

               
Cow position:
               
chr16:33753497-33753225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
100, 154
               

               
Conread position:
               
235-506
               

               
Cow position:
               
chr16:16552628-16552358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
235-515
               

               
Cow position:
               
chr16:37236567-37236852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
67, 106
               

               
Conread position:
               
235-520
               

               
Cow position:
               
chr16:56787709-56787996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
144, 230
               

               
Conread position:
               
235-522
               

               
Cow position:
               
chr16:7077676-7077962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
110, 92
               

               
Conread position:
               
235-525
               

               
Cow position:
               
chr16:15504453-15504750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
100, 113
               

               
Conread position:
               
235-526
               

               
Cow position:
               
chr16:675557-675268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
93, 134
               

               
Conread position:
               
235-533
               

               
Cow position:
               
chr16:14361170-14360872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
145, 92
               

               
Conread position:
               
235-533
               

               
Cow position:
               
chr16:16548680-16548380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
96, 212
               

               
Conread position:
               
235-533
               

               
Cow position:
               
chr16:29159187-29158896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
135, 24
               

               
Conread position:
               
235-534
               

               
Cow position:
               
chr16:8840959-8840659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
50, 86
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:601012-600710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
143, 7
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:5845737-5845436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
59, 52
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:10039780-10040073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:23871583-23871886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
123, 88
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:26610706-26610398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
98, 139
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:46175985-46176274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 62
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chr16:55042501-55042799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chr16:1548811-1549114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 88
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chr16:18686327-18686022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
235-540
               

               
Cow position:
               
chr16:50906544-50906230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
46, 110
               

               
Conread position:
               
235-549
               

               
Cow position:
               
chr16:16265034-16265345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:2223330-2223654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
94, 309
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:4971960-4972272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
153, 94
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:7429446-7429131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
94, 216
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:12906757-12907065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
150, 40
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:14611747-14611431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 88
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:15762089-15762410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
67, 95
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:23483349-23483041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
151, 60
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:28467521-28467838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
94, 67
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:29380317-29380007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
8, 93
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:30290375-30290069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
151, 82
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:32587271-32586952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
104, 143
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:33299461-33299144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
96, 84
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:34168653-34168348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
122, 82
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:39032753-39033066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
112, 67
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:42969859-42970178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
27, 21
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:44228610-44228926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:45566691-45566373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:46752204-46752526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
92, 149
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:47343542-47343226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 111
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:48145335-48145646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
47, 58
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:48520527-48520210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
82, 100
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:49217497-49217812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 50
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:52228874-52228555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
63, 74
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chr16:54321809-54322124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
96, 67
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chr16:15571460-15571143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
44, 87
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chr16:21450914-21450599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
92, 210
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chr16:23248362-23248681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 57
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chr16:29051739-29051420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
108, 65
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chr16:44744066-44744381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 220
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chr16:49125466-49125769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
105, 23
               

               
Conread position:
               
235-553
               

               
Cow position:
               
chr16:689442-689131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
149, 94
               

               
Conread position:
               
235-553
               

               
Cow position:
               
chr16:37380337-37380021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
101, 93
               

               
Conread position:
               
235-558
               

               
Cow position:
               
chr16:24672291-24672615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 24
               

               
Conread position:
               
235-567
               

               
Cow position:
               
chr16:56845837-56846162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 49
               

               
Conread position:
               
235-578
               

               
Cow position:
               
chr16:39646612-39646285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
88, 145
               

               
Conread position:
               
236-520
               

               
Cow position:
               
chr16:7917876-7917581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
40, 117
               

               
Conread position:
               
236-522
               

               
Cow position:
               
chr16:28694795-28694520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
154, 81
               

               
Conread position:
               
236-535
               

               
Cow position:
               
chr16:14568423-14568719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
105, 83
               

               
Conread position:
               
236-537
               

               
Cow position:
               
chr16:39588977-39588669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
236-538
               

               
Cow position:
               
chr16:15370752-15370442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
56, 246
               

               
Conread position:
               
236-550
               

               
Cow position:
               
chr16:9933224-9932909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
104, 23
               

               
Conread position:
               
236-550
               

               
Cow position:
               
chr16:31978120-31978435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
144, 133
               

               
Conread position:
               
236-550
               

               
Cow position:
               
chr16:33482512-33482191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
43, 71
               

               
Conread position:
               
236-550
               

               
Cow position:
               
chr16:47304964-47304653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
149, 93
               

               
Conread position:
               
237-403
               

               
Cow position:
               
chr16:2417524-2417695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
237-534
               

               
Cow position:
               
chr16:44437-44148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
237-534
               

               
Cow position:
               
chr16:10148347-10148048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
101, 226
               

               
Conread position:
               
237-535
               

               
Cow position:
               
chr16:39695418-39695711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
173, 91
               

               
Conread position:
               
237-536
               

               
Cow position:
               
chr16:20476596-20476301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
143, 36
               

               
Conread position:
               
237-550
               

               
Cow position:
               
chr16:4979867-4979569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 139
               

               
Conread position:
               
237-550
               

               
Cow position:
               
chr16:9729260-9728957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
124, 78
               

               
Conread position:
               
237-558
               

               
Cow position:
               
chr16:17606363-17606045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
81, 143
               

               
Conread position:
               
238-464
               

               
Cow position:
               
chr16:10650824-10651057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
238-466
               

               
Cow position:
               
chr16:38191537-38191303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
79, 98
               

               
Conread position:
               
238-468
               

               
Cow position:
               
chr16:22123906-22124124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
90, 29
               

               
Conread position:
               
238-550
               

               
Cow position:
               
chr16:34809968-34809654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
135, 91
               

               
Conread position:
               
239-550
               

               
Cow position:
               
chr16:37052467-37052780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
25, 19
               

               
Conread position:
               
239-550
               

               
Cow position:
               
chr16:42379620-42379307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
240-428
               

               
Cow position:
               
chr16:45753394-45753581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
90, 14
               

               
Conread position:
               
240-539
               

               
Cow position:
               
chr16:1725012-1725311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
240-548
               

               
Cow position:
               
chr16:27671235-27670928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
91, 114
               

               
Conread position:
               
240-552
               

               
Cow position:
               
chr16:36930254-36930569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
73, 92
               

               
Conread position:
               
241-559
               

               
Cow position:
               
chr16:41590838-41590522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 223
               

               
Conread position:
               
242-534
               

               
Cow position:
               
chr16:18718887-18719173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 75
               

               
Conread position:
               
243-510
               

               
Cow position:
               
chr16:39238005-39237732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
243-522
               

               
Cow position:
               
chr16:11568064-11568334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
94, 25
               

               
Conread position:
               
245-392
               

               
Cow position:
               
chr16:35477358-35477505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
91, 135
               

               
Conread position:
               
246-457
               

               
Cow position:
               
chr16:50533109-50532903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
97, 7
               

               
Conread position:
               
247-541
               

               
Cow position:
               
chr16:12085740-12086020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
247-552
               

               
Cow position:
               
chr16:42092332-42092625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 81
               

               
Conread position:
               
248-526
               

               
Cow position:
               
chr16:21905216-21904937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
134, 45
               

               
Conread position:
               
248-550
               

               
Cow position:
               
chr16:42778018-42777716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 63
               

               
Conread position:
               
248-593
               

               
Cow position:
               
chr16:28192124-28191775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 174
               

               
Conread position:
               
249-535
               

               
Cow position:
               
chr16:11619802-11619520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 117
               

               
Conread position:
               
249-539
               

               
Cow position:
               
chr16:11274956-11274671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
84, 129
               

               
Conread position:
               
251-497
               

               
Cow position:
               
chr16:49404108-49404351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
80, 124
               

               
Conread position:
               
251-553
               

               
Cow position:
               
chr16:26342317-26342026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
135, 74
               

               
Conread position:
               
252-536
               

               
Cow position:
               
chr16:30143156-30143448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
128, 85
               

               
Conread position:
               
254-526
               

               
Cow position:
               
chr16:27249453-27249184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 122
               

               
Conread position:
               
256-536
               

               
Cow position:
               
chr16:4372447-4372731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
75, 200
               

               
Conread position:
               
262-550
               

               
Cow position:
               
chr16:22868136-22868421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
7, 77
               

               
Conread position:
               
264-483
               

               
Cow position:
               
chr16:53037595-53037805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 52
               

               
Conread position:
               
265-550
               

               
Cow position:
               
chr16:39787431-39787718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
268-550
               

               
Cow position:
               
chr16:17665667-17665388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
268-550
               

               
Cow position:
               
chr16:24228318-24228597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
102, 59
               

               
Conread position:
               
269-550
               

               
Cow position:
               
chr16:11581527-11581246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
118, 76
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chr16:18650018-18650299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chr16:24148193-24147908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 271
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chr16:37065201-37065479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 173
               

               
Conread position:
               
272-549
               

               
Cow position:
               
chr16:3633325-3633046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
273-550
               

               
Cow position:
               
chr16:20503582-20503304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
273-550
               

               
Cow position:
               
chr16:21011886-21012165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
276-550
               

               
Cow position:
               
chr16:15973802-15974078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 53
               

               
Conread position:
               
278-527
               

               
Cow position:
               
chr16:39417096-39417343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
102, 58
               

               
Conread position:
               
278-550
               

               
Cow position:
               
chr16:19152717-19152450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
128, 10
               

               
Conread position:
               
279-505
               

               
Cow position:
               
chr16:7928612-7928388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
7, 101
               

               
Conread position:
               
279-537
               

               
Cow position:
               
chr16:47336758-47336494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 192
               

               
Conread position:
               
279-550
               

               
Cow position:
               
chr16:4503306-4503033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 53
               

               
Conread position:
               
279-550
               

               
Cow position:
               
chr16:40305954-40305684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 50
               

               
Conread position:
               
279-550
               

               
Cow position:
               
chr16:43804515-43804250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
60, 11
               

               
Conread position:
               
281-550
               

               
Cow position:
               
chr16:46434095-46434363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
59, 47
               

               
Conread position:
               
282-540
               

               
Cow position:
               
chr16:9235455-9235718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
5, 14
               
UCSC Genome Browser

               
Conread position:
               
283-550
               

               
Cow position:
               
chr16:22717620-22717351 (view  custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
103, 67
               
UCSC Genome Browser

               
               
               
Conread position:
283-550

               
               
               
Cow position:
chr16:29067180-29066921 (view  custom track)

               
               
               
Alignm length:
269

               
               
               
Alignm identity:
192

               
               
               
Alignm E-value:
6e-38

               
               
               
Alignm gaps (pig, cow):
127, 55
UCSC Genome Browser

               
               
               
Conread position:
283-550

               
               
               
Cow position:
chr16:30311087-30311356 (view  custom track)

               
               
               
Alignm length:
277

               
               
               
Alignm identity:
191

               
               
               
Alignm E-value:
3e-30

               
               
               
Alignm gaps (pig, cow):
66, 196

               
               
               Conread position:284-537
               
               
               Cow position:chr16:43712118-43711862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):102, 47

               
               
               Conread position:284-550
               
               
               Cow position:chr16:39704821-39705087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):59, 45

               
               
               Conread position:284-552
               
               
               Cow position:chr16:2308707-2308435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):11, 68

               
               
               Conread position:284-552
               
               
               Cow position:chr16:23033869-23033620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 118

               
               
               Conread position:284-552
               
               
               Cow position:chr16:49580100-49579829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:179
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:285-536
               
               
               Cow position:chr16:8325450-8325685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):152, 41

               
               
               Conread position:285-552
               
               
               Cow position:chr16:16424593-16424853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:285-552
               
               
               Cow position:chr16:27005220-27004951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 45

               
               
               Conread position:286-497
               
               
               Cow position:chr16:30587790-30587576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 22

               
               
               Conread position:286-550
               
               
               Cow position:chr16:711944-712210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:6342186-6342452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:6800293-6800559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:7476596-7476330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:7542305-7542044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 167

               
               
               Conread position:286-550
               
               
               Cow position:chr16:8658736-8659002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:10813433-10813167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:20762212-20761947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:26132626-26132892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:28419874-28420138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 59

               
               
               Conread position:286-550
               
               
               Cow position:chr16:29106596-29106862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):101, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:34021301-34021567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:34208666-34208932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:286-550
               
               
               Cow position:chr16:41703310-41703044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):94, 43

               
               
               Conread position:286-552
               
               
               Cow position:chr16:23066679-23066419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 27

               
               
               Conread position:286-567
               
               
               Cow position:chr16:4145082-4144798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:287-512
               
               
               Cow position:chr16:21369503-21369269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:287-522
               
               
               Cow position:chr16:30706122-30705886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):77, 39

               
               
               Conread position:287-530
               
               
               Cow position:chr16:53595508-53595751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):99, 45

               
               
               Conread position:287-537
               
               
               Cow position:chr16:44973509-44973260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:190
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):93, 50

               
               
               Conread position:287-550
               
               
               Cow position:chr16:4712915-4712654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):95, 46

               
               
               Conread position:287-550
               
               
               Cow position:chr16:33508068-33507816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:287-552
               
               
               Cow position:chr16:13791532-13791263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):52, 251

               
               
               Conread position:288-537
               
               
               Cow position:chr16:35168744-35168489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:288-537
               
               
               Cow position:chr16:45603683-45603443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 45

               
               
               Conread position:288-549
               
               
               Cow position:chr16:43537754-43537492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 56

               
               
               Conread position:288-550
               
               
               Cow position:chr16:19632759-19633020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:288-550
               
               
               Cow position:chr16:51399737-51399993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):94, 39

               
               
               Conread position:289-550
               
               
               Cow position:chr16:47509964-47510215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:289-557
               
               
               Cow position:chr16:47620392-47620126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):97, 48

               
               
               Conread position:290-549
               
               
               Cow position:chr16:51069905-51070175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:290-550
               
               
               Cow position:chr16:16177830-16177569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:290-550
               
               
               Cow position:chr16:56912702-56912968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 251

               
               
               Conread position:292-527
               
               
               Cow position:chr16:31159562-31159804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):53, 36

               
               
               Conread position:298-550
               
               
               Cow position:chr16:39385414-39385154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:301-539
               
               
               Cow position:chr16:14028628-14028853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:301-550
               
               
               Cow position:chr16:9790630-9790878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):85, 174

               
               
               Conread position:301-552
               
               
               Cow position:chr16:25287690-25287942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):79, 27

               
               
               Conread position:302-466
               
               
               Cow position:chr16:9136181-9136007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:306-536
               
               
               Cow position:chr16:4134870-4134631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:306-536
               
               
               Cow position:chr16:7082732-7082968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 165

               
               
               Conread position:306-537
               
               
               Cow position:chr16:50189594-50189830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):8, 23

               
               
               Conread position:310-550
               
               
               Cow position:chr16:44831514-44831278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):53, 19

               
               
               Conread position:311-536
               
               
               Cow position:chr16:31074386-31074160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:311-549
               
               
               Cow position:chr16:19818828-19819070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:311-549
               
               
               Cow position:chr16:31216012-31216251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 39

               
               
               Conread position:311-550
               
               
               Cow position:chr16:4293706-4293465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):63, 37

               
               
               Conread position:311-550
               
               
               Cow position:chr16:18936873-18937114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:311-553
               
               
               Cow position:chr16:51530976-51531227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:311-559
               
               
               Cow position:chr16:3918525-3918272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:312-536
               
               
               Cow position:chr16:2750979-2750756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:312-550
               
               
               Cow position:chr16:9940870-9940639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 9

               
               
               Conread position:313-536
               
               
               Cow position:chr16:4875983-4875763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):67, 150

               
               
               Conread position:313-539
               
               
               Cow position:chr16:50383190-50382962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 20

               
               
               Conread position:317-550
               
               
               Cow position:chr16:18373951-18374182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):56, 21

               
               
               Conread position:317-550
               
               
               Cow position:chr16:45261215-45261449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 216

               
               
               Conread position:318-496
               
               
               Cow position:chr16:54598236-54598065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:319-536
               
               
               Cow position:chr16:53613288-53613063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:319-550
               
               
               Cow position:chr16:10857641-10857871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 211

               
               
               Conread position:319-552
               
               
               Cow position:chr16:30639316-30639092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:320-507
               
               
               Cow position:chr16:52227112-52227303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 19

               
               
               Conread position:320-550
               
               
               Cow position:chr16:19063604-19063371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 9

               
               
               Conread position:320-562
               
               
               Cow position:chr16:39007260-39007499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):97, 9

               
               
               Conread position:321-550
               
               
               Cow position:chr16:50711922-50712154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 12

               
               
               Conread position:321-550
               
               
               Cow position:chr16:56198501-56198271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 10

               
               
               Conread position:322-529
               
               
               Cow position:chr16:16544047-16543845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:322-534
               
               
               Cow position:chr16:42253586-42253806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):64, 209

               
               
               Conread position:322-539
               
               
               Cow position:chr16:41608593-41608370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 143

               
               
               Conread position:322-550
               
               
               Cow position:chr16:18496186-18496415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 20

               
               
               Conread position:322-550
               
               
               Cow position:chr16:23990504-23990734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):64, 11

               
               
               Conread position:323-539
               
               
               Cow position:chr16:4277742-4277952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):87, 25

               
               
               Conread position:323-550
               
               
               Cow position:chr16:8652337-8652110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 10

               
               
               Conread position:323-550
               
               
               Cow position:chr16:15978866-15979092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 22

               
               
               Conread position:323-550
               
               
               Cow position:chr16:47662691-47662466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):57, 24

               
               
               Conread position:323-552
               
               
               Cow position:chr16:46222976-46223210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):5, 21

               
               
               Conread position:323-552
               
               
               Cow position:chr16:46571057-46571301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:324-552
               
               
               Cow position:chr16:17948204-17948431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:327-550
               
               
               Cow position:chr16:7997645-7997860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):90, 60

               
               
               Conread position:328-550
               
               
               Cow position:chr16:52219057-52218842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:329-533
               
               
               Cow position:chr16:43742970-43743173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):6, 18

               
               
               Conread position:329-551
               
               
               Cow position:chr16:7639964-7639747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 71

               
               
               Conread position:329-552
               
               
               Cow position:chr16:15320499-15320718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 39

               
               
               Conread position:329-552
               
               
               Cow position:chr16:34210435-34210662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):8, 125

               
               
               Conread position:329-552
               
               
               Cow position:chr16:51578445-51578668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:177
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):13, 19

               
               
               Conread position:329-570
               
               
               Cow position:chr16:11643321-11643090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 102

               
               
               Conread position:330-550
               
               
               Cow position:chr16:11425172-11425387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):80, 28

               
               
               Conread position:332-514
               
               
               Cow position:chr16:24142967-24143149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):99, 55

               
               
               Conread position:332-552
               
               
               Cow position:chr16:17867502-17867724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 132

               
               
               Conread position:334-526
               
               
               Cow position:chr16:43323942-43324138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:334-533
               
               
               Cow position:chr16:47017281-47017477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:335-536
               
               
               Cow position:chr16:43152748-43152940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:335-550
               
               
               Cow position:chr16:49141598-49141808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 113

               
               
               Conread position:337-518
               
               
               Cow position:chr16:24616749-24616564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:337-550
               
               
               Cow position:chr16:26501121-26500914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:337-550
               
               
               Cow position:chr16:30908961-30909178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):55, 202

               
               
               Conread position:337-550
               
               
               Cow position:chr16:30939699-30939487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:337-550
               
               
               Cow position:chr16:33752161-33751951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):49, 107

               
               
               Conread position:350-550
               
               
               Cow position:chr16:15805928-15805735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:354-536
               
               
               Cow position:chr16:29399948-29399758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:354-537
               
               
               Cow position:chr16:45046569-45046392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):56, 32

               
               
               Conread position:354-537
               
               
               Cow position:chr16:48424942-48424755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 54

               
               
               Conread position:355-550
               
               
               Cow position:chr16:15443584-15443395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):131, 22

               
               
               Conread position:356-550
               
               
               Cow position:chr16:37442180-37442375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:359-535
               
               
               Cow position:chr16:13043739-13043561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:374-532
               
               
               Cow position:chr16:23674088-23673930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:376-535
               
               
               Cow position:chr16:589995-590143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:377-535
               
               
               Cow position:chr16:16232007-16231848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:377-535
               
               
               Cow position:chr16:25484285-25484133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:377-536
               
               
               Cow position:chr16:5293580-5293427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:377-550
               
               
               Cow position:chr16:901962-902134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 157

               
               
               Conread position:377-552
               
               
               Cow position:chr16:24403660-24403481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):33, 162

               
               
               Conread position:378-550
               
               
               Cow position:chr16:18052015-18051843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:378-552
               
               
               Cow position:chr16:33777735-33777570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):7, 33

               
               
               Conread position:379-560
               
               
               Cow position:chr16:8481169-8481349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 86

               
               
               Conread position:380-507
               
               
               Cow position:chr16:26846150-26846027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:380-536
               
               
               Cow position:chr16:9948712-9948556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:380-536
               
               
               Cow position:chr16:44688360-44688515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:380-550
               
               
               Cow position:chr16:8807173-8807337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 91

               
               
               Conread position:385-550
               
               
               Cow position:chr16:8706635-8706798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 76

               
               
               Conread position:390-501
               
               
               Cow position:chr16:22206848-22206736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:392-537
               
               
               Cow position:chr16:30036116-30035971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:397-533
               
               
               Cow position:chr16:52565358-52565222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 19

               
               
               Conread position:397-536
               
               
               Cow position:chr16:23025245-23025106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:397-537
               
               
               Cow position:chr16:47780973-47780835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:397-550
               
               
               Cow position:chr16:8796328-8796476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:397-550
               
               
               Cow position:chr16:45157537-45157687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:398-550
               
               
               Cow position:chr16:41037585-41037437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:398-557
               
               
               Cow position:chr16:52802543-52802387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:401-536
               
               
               Cow position:chr16:9845813-9845948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:403-552
               
               
               Cow position:chr16:21762405-21762549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:403-552
               
               
               Cow position:chr16:54227830-54227975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:407-539
               
               
               Cow position:chr16:20663040-20662911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:409-520
               
               
               Cow position:chr16:29017402-29017294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:409-533
               
               
               Cow position:chr16:12020624-12020500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:409-536
               
               
               Cow position:chr16:12909742-12909869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:409-548
               
               
               Cow position:chr16:11099909-11100040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:409-550
               
               
               Cow position:chr16:18574277-18574138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:409-550
               
               
               Cow position:chr16:33405871-33406004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:409-552
               
               
               Cow position:chr16:10933834-10933690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 92

               
               
               Conread position:409-567
               
               
               Cow position:chr16:7619309-7619460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:414-549
               
               
               Cow position:chr16:13177286-13177153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:416-507
               
               
               Cow position:chr16:43758988-43759079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:79
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:416-535
               
               
               Cow position:chr16:53769766-53769882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:416-538
               
               
               Cow position:chr16:12738214-12738094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:416-549
               
               
               Cow position:chr16:45173665-45173796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:416-550
               
               
               Cow position:chr16:11185209-11185341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:416-550
               
               
               Cow position:chr16:16932877-16932750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:416-551
               
               
               Cow position:chr16:44898848-44898979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:418-550
               
               
               Cow position:chr16:18632484-18632612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 40

               
               
               Conread position:418-556
               
               
               Cow position:chr16:15495851-15495714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):136, 115

               
               
               Conread position:421-552
               
               
               Cow position:chr16:19976847-19976716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 45

               
               
               Conread position:423-539
               
               
               Cow position:chr16:33458126-33458242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:427-550
               
               
               Cow position:chr16:36121393-36121514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:427-557
               
               
               Cow position:chr16:52586129-52586257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:428-550
               
               
               Cow position:chr16:41578000-41577880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:429-532
               
               
               Cow position:chr16:12106532-12106433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:434-552
               
               
               Cow position:chr16:33198595-33198713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:436-537
               
               
               Cow position:chr16:11082806-11082704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 83

               
               
               Conread position:438-552
               
               
               Cow position:chr16:37401184-37401073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0
Show alignments to all cow chromosomes.