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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8049M02.5
        

               
Conread position:
               
37-310
               

               
Cow position:
               
chrX:34508824-34508562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
34, 89
               

               
Conread position:
               
40-364
               

               
Cow position:
               
chrX:40531773-40532080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
295, 25
               

               
Conread position:
               
41-537
               

               
Cow position:
               
chrX:15576826-15576335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
43-324
               

               
Cow position:
               
chrX:27668676-27668954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 100
               

               
Conread position:
               
45-341
               

               
Cow position:
               
chrX:16836008-16836299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
26, 100
               

               
Conread position:
               
45-518
               

               
Cow position:
               
chrX:31312305-31311835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 22
               

               
Conread position:
               
45-537
               

               
Cow position:
               
chrX:42246897-42247393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 144
               

               
Conread position:
               
45-538
               

               
Cow position:
               
chrX:18694656-18695130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 53
               

               
Conread position:
               
45-567
               

               
Cow position:
               
chrX:12290999-12290499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
5, 20
               

               
Conread position:
               
47-426
               

               
Cow position:
               
chrX:16348303-16348672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
278, 17
               

               
Conread position:
               
48-502
               

               
Cow position:
               
chrX:15231381-15231831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
48-526
               

               
Cow position:
               
chrX:17726261-17725776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 23
               

               
Conread position:
               
48-530
               

               
Cow position:
               
chrX:27705869-27705386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 37
               

               
Conread position:
               
50-543
               

               
Cow position:
               
chrX:40480598-40481088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 10
               

               
Conread position:
               
50-567
               

               
Cow position:
               
chrX:27771693-27772191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
55-455
               

               
Cow position:
               
chrX:34504781-34505178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 38
               

               
Conread position:
               
55-536
               

               
Cow position:
               
chrX:17232007-17231526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
104, 31
               

               
Conread position:
               
57-538
               

               
Cow position:
               
chrX:3580216-3579734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
11, 28
               

               
Conread position:
               
60-504
               

               
Cow position:
               
chrX:29679994-29680433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 43
               

               
Conread position:
               
60-552
               

               
Cow position:
               
chrX:40557417-40557898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
62-324
               

               
Cow position:
               
chrX:32942818-32943072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
63-540
               

               
Cow position:
               
chrX:4632587-4633063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
36, 81
               

               
Conread position:
               
64-447
               

               
Cow position:
               
chrX:23562902-23562512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
13, 276
               

               
Conread position:
               
65-405
               

               
Cow position:
               
chrX:37129533-37129188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 69
               

               
Conread position:
               
65-484
               

               
Cow position:
               
chrX:8917659-8917236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
66-500
               

               
Cow position:
               
chrX:35885456-35885902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
66-527
               

               
Cow position:
               
chrX:38218968-38218507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 24
               

               
Conread position:
               
66-533
               

               
Cow position:
               
chrX:15546142-15545689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
75, 115
               

               
Conread position:
               
66-535
               

               
Cow position:
               
chrX:7695997-7695552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
11, 68
               

               
Conread position:
               
66-536
               

               
Cow position:
               
chrX:2301190-2300725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 81
               

               
Conread position:
               
66-537
               

               
Cow position:
               
chrX:41884141-41884627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 47
               

               
Conread position:
               
66-550
               

               
Cow position:
               
chrX:878116-878591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
66-567
               

               
Cow position:
               
chrX:7722239-7721748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 70
               

               
Conread position:
               
67-537
               

               
Cow position:
               
chrX:12979577-12980040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 32
               

               
Conread position:
               
67-540
               

               
Cow position:
               
chrX:32330434-32329948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
67-549
               

               
Cow position:
               
chrX:31489782-31489293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
67-552
               

               
Cow position:
               
chrX:30133065-30133546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
163, 28
               

               
Conread position:
               
67-552
               

               
Cow position:
               
chrX:38964358-38963887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
38, 75
               

               
Conread position:
               
68-504
               

               
Cow position:
               
chrX:22386983-22387427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
68-516
               

               
Cow position:
               
chrX:32821271-32820840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
144, 65
               

               
Conread position:
               
68-534
               

               
Cow position:
               
chrX:38642499-38642051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
333, 19
               

               
Conread position:
               
69-552
               

               
Cow position:
               
chrX:20339637-20340113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 62
               

               
Conread position:
               
70-536
               

               
Cow position:
               
chrX:27508767-27509228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
71-468
               

               
Cow position:
               
chrX:29724008-29723597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
71-546
               

               
Cow position:
               
chrX:46588075-46587599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
128, 16
               

               
Conread position:
               
71-550
               

               
Cow position:
               
chrX:9416429-9416913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
76, 62
               

               
Conread position:
               
72-298
               

               
Cow position:
               
chrX:41940076-41939853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
72-468
               

               
Cow position:
               
chrX:11084812-11085201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
314, 73
               

               
Conread position:
               
73-376
               

               
Cow position:
               
chrX:35986069-35985770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
253, 64
               

               
Conread position:
               
74-468
               

               
Cow position:
               
chrX:5919739-5919352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
149, 20
               

               
Conread position:
               
75-550
               

               
Cow position:
               
chrX:27446935-27446468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
76-536
               

               
Cow position:
               
chrX:15146942-15147395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
78-503
               

               
Cow position:
               
chrX:18486055-18485619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
21, 67
               

               
Conread position:
               
79-552
               

               
Cow position:
               
chrX:25815652-25816118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
81-336
               

               
Cow position:
               
chrX:16984881-16984633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
81-365
               

               
Cow position:
               
chrX:19394803-19394515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 62
               

               
Conread position:
               
82-463
               

               
Cow position:
               
chrX:616022-616401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
244, 51
               

               
Conread position:
               
82-534
               

               
Cow position:
               
chrX:25035136-25035594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
82-537
               

               
Cow position:
               
chrX:37489946-37489521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
313, 51
               

               
Conread position:
               
86-552
               

               
Cow position:
               
chrX:11656320-11655864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 53
               

               
Conread position:
               
87-399
               

               
Cow position:
               
chrX:19469265-19469575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 13
               

               
Conread position:
               
87-548
               

               
Cow position:
               
chrX:33854985-33855451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
87-550
               

               
Cow position:
               
chrX:4996829-4996391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
18, 10
               

               
Conread position:
               
87-554
               

               
Cow position:
               
chrX:26493247-26492778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
76, 50
               

               
Conread position:
               
90-548
               

               
Cow position:
               
chrX:11633919-11633460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
64, 51
               

               
Conread position:
               
90-550
               

               
Cow position:
               
chrX:35269093-35268670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
91-330
               

               
Cow position:
               
chrX:39290594-39290357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
91-390
               

               
Cow position:
               
chrX:20957478-20957185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 53
               

               
Conread position:
               
91-437
               

               
Cow position:
               
chrX:30337717-30338055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
91-494
               

               
Cow position:
               
chrX:6407780-6407382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
68, 54
               

               
Conread position:
               
91-497
               

               
Cow position:
               
chrX:4399355-4398956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 51
               

               
Conread position:
               
91-534
               

               
Cow position:
               
chrX:33466858-33466407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
68, 41
               

               
Conread position:
               
91-536
               

               
Cow position:
               
chrX:27175236-27174786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
91-550
               

               
Cow position:
               
chrX:13913311-13912859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 90
               

               
Conread position:
               
92-537
               

               
Cow position:
               
chrX:27442302-27442764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
96-365
               

               
Cow position:
               
chrX:22115083-22115353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
67, 235
               

               
Conread position:
               
100-541
               

               
Cow position:
               
chrX:24365595-24366045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
90, 41
               

               
Conread position:
               
100-550
               

               
Cow position:
               
chrX:36283567-36283125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
63, 41
               

               
Conread position:
               
100-552
               

               
Cow position:
               
chrX:9251936-9252400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
102-461
               

               
Cow position:
               
chrX:41027385-41027020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
110-377
               

               
Cow position:
               
chrX:22392771-22393035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
110-438
               

               
Cow position:
               
chrX:42927613-42927933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 31
               

               
Conread position:
               
110-444
               

               
Cow position:
               
chrX:26881345-26881688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
31, 80
               

               
Conread position:
               
110-550
               

               
Cow position:
               
chrX:9634975-9635401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
24, 78
               

               
Conread position:
               
110-550
               

               
Cow position:
               
chrX:30962658-30963092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
111-550
               

               
Cow position:
               
chrX:38549662-38549228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 34
               

               
Conread position:
               
112-530
               

               
Cow position:
               
chrX:37780897-37781320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 22
               

               
Conread position:
               
112-552
               

               
Cow position:
               
chrX:22482474-22482911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
138-476
               

               
Cow position:
               
chrX:39415182-39415518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
199, 22
               

               
Conread position:
               
138-482
               

               
Cow position:
               
chrX:27228319-27227969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
138-550
               

               
Cow position:
               
chrX:11717592-11718000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 254
               

               
Conread position:
               
138-559
               

               
Cow position:
               
chrX:630118-630537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 27
               

               
Conread position:
               
142-550
               

               
Cow position:
               
chrX:15329828-15329433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 9
               

               
Conread position:
               
142-552
               

               
Cow position:
               
chrX:152086-151679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
187, 93
               

               
Conread position:
               
142-552
               

               
Cow position:
               
chrX:3154058-3154468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 17
               

               
Conread position:
               
143-459
               

               
Cow position:
               
chrX:48014620-48014306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
80, 86
               

               
Conread position:
               
145-351
               

               
Cow position:
               
chrX:20743784-20743579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
193, 40
               

               
Conread position:
               
145-397
               

               
Cow position:
               
chrX:32977903-32978146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
6, 21
               

               
Conread position:
               
145-465
               

               
Cow position:
               
chrX:9365493-9365815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
40, 48
               

               
Conread position:
               
145-476
               

               
Cow position:
               
chrX:18425754-18426090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 73
               

               
Conread position:
               
145-493
               

               
Cow position:
               
chrX:48385184-48385529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
145-512
               

               
Cow position:
               
chrX:36068202-36067835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 272
               

               
Conread position:
               
145-519
               

               
Cow position:
               
chrX:43730041-43730406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 50
               

               
Conread position:
               
145-536
               

               
Cow position:
               
chrX:42171114-42171508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
145-537
               

               
Cow position:
               
chrX:1104613-1105013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
145-538
               

               
Cow position:
               
chrX:7719033-7718644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
145-550
               

               
Cow position:
               
chrX:7053550-7053956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 78
               

               
Conread position:
               
145-552
               

               
Cow position:
               
chrX:13382504-13382102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 24
               

               
Conread position:
               
146-472
               

               
Cow position:
               
chrX:23562042-23561728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
146-550
               

               
Cow position:
               
chrX:618830-619228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 40
               

               
Conread position:
               
146-550
               

               
Cow position:
               
chrX:27393846-27394234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 41
               

               
Conread position:
               
147-518
               

               
Cow position:
               
chrX:23785825-23785463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
60, 44
               

               
Conread position:
               
147-536
               

               
Cow position:
               
chrX:7497419-7497035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
149-552
               

               
Cow position:
               
chrX:40269671-40269254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 400
               

               
Conread position:
               
150-370
               

               
Cow position:
               
chrX:29553463-29553243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
39, 11
               

               
Conread position:
               
150-537
               

               
Cow position:
               
chrX:31294400-31294753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
150-548
               

               
Cow position:
               
chrX:34503097-34502702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 15
               

               
Conread position:
               
151-540
               

               
Cow position:
               
chrX:5017251-5017620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
82, 5
               

               
Conread position:
               
151-552
               

               
Cow position:
               
chrX:6278323-6278728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
152-535
               

               
Cow position:
               
chrX:4043693-4044058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 58
               

               
Conread position:
               
152-535
               

               
Cow position:
               
chrX:7351471-7351092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
54, 35
               

               
Conread position:
               
152-541
               

               
Cow position:
               
chrX:38853374-38852984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
152-548
               

               
Cow position:
               
chrX:5872495-5872095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 77
               

               
Conread position:
               
152-558
               

               
Cow position:
               
chrX:39126505-39126110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
153-406
               

               
Cow position:
               
chrX:5135347-5135607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
89, 34
               

               
Conread position:
               
153-550
               

               
Cow position:
               
chrX:23513847-23514238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
227, 41
               

               
Conread position:
               
153-550
               

               
Cow position:
               
chrX:27516695-27516312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
34, 65
               

               
Conread position:
               
154-463
               

               
Cow position:
               
chrX:18204288-18204602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 182
               

               
Conread position:
               
156-550
               

               
Cow position:
               
chrX:34402177-34401777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 14
               

               
Conread position:
               
156-556
               

               
Cow position:
               
chrX:6690088-6690477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
230, 171
               

               
Conread position:
               
158-550
               

               
Cow position:
               
chrX:33640145-33639751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
181, 320
               

               
Conread position:
               
158-552
               

               
Cow position:
               
chrX:8797423-8797026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 119
               

               
Conread position:
               
159-430
               

               
Cow position:
               
chrX:169379-169646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
248, 34
               

               
Conread position:
               
159-444
               

               
Cow position:
               
chrX:27119859-27119579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
233, 33
               

               
Conread position:
               
159-534
               

               
Cow position:
               
chrX:41526362-41526730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 28
               

               
Conread position:
               
159-539
               

               
Cow position:
               
chrX:10831319-10831708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
159-550
               

               
Cow position:
               
chrX:28878006-28878382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
14, 29
               

               
Conread position:
               
162-516
               

               
Cow position:
               
chrX:42235361-42235722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
158, 25
               

               
Conread position:
               
162-536
               

               
Cow position:
               
chrX:38006606-38006976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 51
               

               
Conread position:
               
162-550
               

               
Cow position:
               
chrX:33493941-33493552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
176, 30
               

               
Conread position:
               
163-478
               

               
Cow position:
               
chrX:45670387-45670078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
97, 186
               

               
Conread position:
               
163-548
               

               
Cow position:
               
chrX:5900625-5900239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
213, 24
               

               
Conread position:
               
163-550
               

               
Cow position:
               
chrX:13647622-13648004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 24
               

               
Conread position:
               
164-558
               

               
Cow position:
               
chrX:29601666-29602062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
169, 23
               

               
Conread position:
               
165-365
               

               
Cow position:
               
chrX:6599621-6599821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
170, 22
               

               
Conread position:
               
165-456
               

               
Cow position:
               
chrX:40685167-40685463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
165-523
               

               
Cow position:
               
chrX:47484100-47484467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
165-534
               

               
Cow position:
               
chrX:31250551-31250183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
58, 62
               

               
Conread position:
               
165-547
               

               
Cow position:
               
chrX:14599695-14599312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
165-559
               

               
Cow position:
               
chrX:41790265-41790675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
23, 59
               

               
Conread position:
               
166-477
               

               
Cow position:
               
chrX:21986132-21986446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
165, 28
               

               
Conread position:
               
166-549
               

               
Cow position:
               
chrX:24105784-24105407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
16, 36
               

               
Conread position:
               
166-552
               

               
Cow position:
               
chrX:45429861-45430239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 27
               

               
Conread position:
               
169-533
               

               
Cow position:
               
chrX:41878773-41879140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
21, 50
               

               
Conread position:
               
169-535
               

               
Cow position:
               
chrX:35273528-35273144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 92
               

               
Conread position:
               
169-550
               

               
Cow position:
               
chrX:47344457-47344074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
26, 48
               

               
Conread position:
               
169-552
               

               
Cow position:
               
chrX:45175009-45174622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 370
               

               
Conread position:
               
169-554
               

               
Cow position:
               
chrX:32623727-32623358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 18
               

               
Conread position:
               
170-412
               

               
Cow position:
               
chrX:1466319-1466073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
160, 22
               

               
Conread position:
               
170-412
               

               
Cow position:
               
chrX:29050404-29050159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
159, 33
               

               
Conread position:
               
170-476
               

               
Cow position:
               
chrX:5118339-5118654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 200
               

               
Conread position:
               
170-506
               

               
Cow position:
               
chrX:24287774-24288111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
170-513
               

               
Cow position:
               
chrX:31252567-31252230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 69
               

               
Conread position:
               
170-534
               

               
Cow position:
               
chrX:842318-841952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
25, 69
               

               
Conread position:
               
170-537
               

               
Cow position:
               
chrX:6414197-6413837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 17
               

               
Conread position:
               
170-542
               

               
Cow position:
               
chrX:8869245-8869623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 17
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chrX:11844081-11844461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
25, 58
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chrX:21064441-21064066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
170-550
               

               
Cow position:
               
chrX:35543043-35542671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 23
               

               
Conread position:
               
171-333
               

               
Cow position:
               
chrX:2936115-2935952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
171-406
               

               
Cow position:
               
chrX:23113441-23113196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
147, 26
               

               
Conread position:
               
171-539
               

               
Cow position:
               
chrX:32420369-32420007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
34, 44
               

               
Conread position:
               
171-550
               

               
Cow position:
               
chrX:9650869-9651266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
161, 20
               

               
Conread position:
               
172-550
               

               
Cow position:
               
chrX:31436628-31436260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 15
               

               
Conread position:
               
173-455
               

               
Cow position:
               
chrX:19273552-19273854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
174-426
               

               
Cow position:
               
chrX:34836910-34837156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
195, 140
               

               
Conread position:
               
174-494
               

               
Cow position:
               
chrX:4278965-4279281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
27, 54
               

               
Conread position:
               
174-536
               

               
Cow position:
               
chrX:17888271-17888614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
166, 13
               

               
Conread position:
               
174-536
               

               
Cow position:
               
chrX:34377098-34376748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
19, 142
               

               
Conread position:
               
174-540
               

               
Cow position:
               
chrX:14275589-14275949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 215
               

               
Conread position:
               
174-549
               

               
Cow position:
               
chrX:45502298-45501929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 19
               

               
Conread position:
               
174-552
               

               
Cow position:
               
chrX:13177322-13177687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 149
               

               
Conread position:
               
174-558
               

               
Cow position:
               
chrX:37072545-37072177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 142
               

               
Conread position:
               
174-567
               

               
Cow position:
               
chrX:15006998-15007388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
208, 13
               

               
Conread position:
               
175-550
               

               
Cow position:
               
chrX:12437119-12437462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
175-551
               

               
Cow position:
               
chrX:13191405-13191765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
22, 96
               

               
Conread position:
               
176-341
               

               
Cow position:
               
chrX:12972835-12972668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
176-496
               

               
Cow position:
               
chrX:27145758-27145455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
29, 150
               

               
Conread position:
               
176-537
               

               
Cow position:
               
chrX:4268915-4269277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
23, 11
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chrX:20697457-20697828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
57, 47
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chrX:23092023-23091661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 192
               

               
Conread position:
               
176-550
               

               
Cow position:
               
chrX:42380962-42381320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 16
               

               
Conread position:
               
176-552
               

               
Cow position:
               
chrX:16762927-16762549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
176-552
               

               
Cow position:
               
chrX:45414153-45414522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 28
               

               
Conread position:
               
178-365
               

               
Cow position:
               
chrX:11325949-11326137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
142, 14
               

               
Conread position:
               
178-459
               

               
Cow position:
               
chrX:41871218-41870938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
11, 207
               

               
Conread position:
               
178-467
               

               
Cow position:
               
chrX:11614844-11614556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
13, 78
               

               
Conread position:
               
178-540
               

               
Cow position:
               
chrX:20152006-20151638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
180-363
               

               
Cow position:
               
chrX:4289593-4289404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
180-455
               

               
Cow position:
               
chrX:45977072-45976789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
180-513
               

               
Cow position:
               
chrX:35382889-35383205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
206, 69
               

               
Conread position:
               
180-534
               

               
Cow position:
               
chrX:9201694-9201340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 7
               

               
Conread position:
               
180-536
               

               
Cow position:
               
chrX:30543135-30543495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
180-538
               

               
Cow position:
               
chrX:44397156-44396804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
200, 14
               

               
Conread position:
               
180-539
               

               
Cow position:
               
chrX:43527654-43527292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
195, 7
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chrX:1615900-1616268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 35
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chrX:31442682-31443041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 12
               

               
Conread position:
               
180-550
               

               
Cow position:
               
chrX:46072669-46073042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
144, 266
               

               
Conread position:
               
180-552
               

               
Cow position:
               
chrX:17795129-17794763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 7
               

               
Conread position:
               
181-325
               

               
Cow position:
               
chrX:4467113-4466970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
181-460
               

               
Cow position:
               
chrX:31729587-31729307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
26, 6
               

               
Conread position:
               
181-487
               

               
Cow position:
               
chrX:36356250-36355956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
165, 6
               

               
Conread position:
               
181-533
               

               
Cow position:
               
chrX:36976096-36975744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
49, 6
               

               
Conread position:
               
181-535
               

               
Cow position:
               
chrX:28865860-28866200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
124, 11
               

               
Conread position:
               
181-536
               

               
Cow position:
               
chrX:45110801-45110447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 6
               

               
Conread position:
               
181-536
               

               
Cow position:
               
chrX:45598460-45598812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
189, 6
               

               
Conread position:
               
181-539
               

               
Cow position:
               
chrX:34411991-34411628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 6
               

               
Conread position:
               
181-550
               

               
Cow position:
               
chrX:40035295-40035670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 6
               

               
Conread position:
               
182-370
               

               
Cow position:
               
chrX:27306600-27306410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
182-536
               

               
Cow position:
               
chrX:488650-488281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
25, 49
               

               
Conread position:
               
183-412
               

               
Cow position:
               
chrX:47345471-47345246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
197, 33
               

               
Conread position:
               
184-554
               

               
Cow position:
               
chrX:10959251-10959627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
162, 204
               

               
Conread position:
               
187-325
               

               
Cow position:
               
chrX:29501743-29501878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
187-459
               

               
Cow position:
               
chrX:37986366-37986098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
148, 63
               

               
Conread position:
               
187-471
               

               
Cow position:
               
chrX:38066312-38066597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 173
               

               
Conread position:
               
187-497
               

               
Cow position:
               
chrX:25207716-25208016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
187-526
               

               
Cow position:
               
chrX:34565424-34565094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
137, 19
               

               
Conread position:
               
187-531
               

               
Cow position:
               
chrX:10252058-10252385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
10, 77
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chrX:17630660-17631011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
38, 42
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chrX:30420811-30421148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
286, 94
               

               
Conread position:
               
187-536
               

               
Cow position:
               
chrX:42011422-42011071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
187-537
               

               
Cow position:
               
chrX:14973605-14973944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
209, 91
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chrX:19930783-19930436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chrX:21672701-21672331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 30
               

               
Conread position:
               
187-550
               

               
Cow position:
               
chrX:32310246-32309886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 7
               

               
Conread position:
               
187-552
               

               
Cow position:
               
chrX:14883815-14884184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 7
               

               
Conread position:
               
187-558
               

               
Cow position:
               
chrX:15305156-15305516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
72, 7
               

               
Conread position:
               
187-566
               

               
Cow position:
               
chrX:1503468-1503104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
187, 94
               

               
Conread position:
               
188-389
               

               
Cow position:
               
chrX:4152891-4153095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
136, 198
               

               
Conread position:
               
188-389
               

               
Cow position:
               
chrX:46429679-46429881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
138, 188
               

               
Conread position:
               
188-454
               

               
Cow position:
               
chrX:43115290-43115021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
149, 89
               

               
Conread position:
               
188-491
               

               
Cow position:
               
chrX:41068865-41068564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
139, 238
               

               
Conread position:
               
188-497
               

               
Cow position:
               
chrX:34792173-34792480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 11
               

               
Conread position:
               
188-534
               

               
Cow position:
               
chrX:41192844-41192478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
154, 189
               

               
Conread position:
               
188-534
               

               
Cow position:
               
chrX:41238215-41238572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
190, 80
               

               
Conread position:
               
188-536
               

               
Cow position:
               
chrX:17964382-17964731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
145, 121
               

               
Conread position:
               
188-537
               

               
Cow position:
               
chrX:4768872-4768541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
188-550
               

               
Cow position:
               
chrX:17662458-17662817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 29
               

               
Conread position:
               
188-552
               

               
Cow position:
               
chrX:22074940-22074578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 196
               

               
Conread position:
               
188-552
               

               
Cow position:
               
chrX:25338328-25337957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
189-510
               

               
Cow position:
               
chrX:46433630-46433298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
34, 38
               

               
Conread position:
               
189-535
               

               
Cow position:
               
chrX:4825697-4826035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
191, 61
               

               
Conread position:
               
189-536
               

               
Cow position:
               
chrX:38094381-38094734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
189-536
               

               
Cow position:
               
chrX:41123198-41122863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
150, 95
               

               
Conread position:
               
189-539
               

               
Cow position:
               
chrX:45846241-45845884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 105
               

               
Conread position:
               
189-552
               

               
Cow position:
               
chrX:11073052-11073413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 177
               

               
Conread position:
               
190-536
               

               
Cow position:
               
chrX:48236955-48236603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
97, 52
               

               
Conread position:
               
191-526
               

               
Cow position:
               
chrX:917231-917570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
187, 117
               

               
Conread position:
               
192-480
               

               
Cow position:
               
chrX:20584464-20584166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
192-533
               

               
Cow position:
               
chrX:29121183-29120851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
132, 256
               

               
Conread position:
               
192-551
               

               
Cow position:
               
chrX:10411848-10412207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
192-552
               

               
Cow position:
               
chrX:44961887-44961525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
136, 253
               

               
Conread position:
               
194-385
               

               
Cow position:
               
chrX:12082190-12082382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
139, 74
               

               
Conread position:
               
194-550
               

               
Cow position:
               
chrX:9041110-9041449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
139, 118
               

               
Conread position:
               
196-343
               

               
Cow position:
               
chrX:45382914-45383061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
196-437
               

               
Cow position:
               
chrX:29230131-29229896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
184, 128
               

               
Conread position:
               
196-437
               

               
Cow position:
               
chrX:33539302-33539052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
182, 117
               

               
Conread position:
               
196-457
               

               
Cow position:
               
chrX:7162188-7161927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
133, 71
               

               
Conread position:
               
196-526
               

               
Cow position:
               
chrX:1499798-1499471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
16, 266
               

               
Conread position:
               
196-526
               

               
Cow position:
               
chrX:7278043-7277721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
174, 131
               

               
Conread position:
               
196-536
               

               
Cow position:
               
chrX:6544386-6544048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 67
               

               
Conread position:
               
196-537
               

               
Cow position:
               
chrX:37232539-37232200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 120
               

               
Conread position:
               
196-547
               

               
Cow position:
               
chrX:37910576-37910235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
139, 8
               

               
Conread position:
               
196-552
               

               
Cow position:
               
chrX:27431786-27432141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
182, 132
               

               
Conread position:
               
197-537
               

               
Cow position:
               
chrX:16283812-16284156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
13, 20
               

               
Conread position:
               
197-551
               

               
Cow position:
               
chrX:37574971-37574635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
198-548
               

               
Cow position:
               
chrX:8925828-8925485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 11
               

               
Conread position:
               
198-552
               

               
Cow position:
               
chrX:10302471-10302114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
201-494
               

               
Cow position:
               
chrX:14019276-14018985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
172, 15
               

               
Conread position:
               
203-365
               

               
Cow position:
               
chrX:29585244-29585083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
203-405
               

               
Cow position:
               
chrX:18272933-18273139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
129, 60
               

               
Conread position:
               
203-406
               

               
Cow position:
               
chrX:918591-918809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
57, 52
               

               
Conread position:
               
203-468
               

               
Cow position:
               
chrX:34314149-34313889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
125, 109
               

               
Conread position:
               
203-543
               

               
Cow position:
               
chrX:34532645-34532314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 245
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chrX:35533980-35533631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
203-550
               

               
Cow position:
               
chrX:46578726-46579075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chrX:39558224-39558570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 39
               

               
Conread position:
               
203-552
               

               
Cow position:
               
chrX:42469816-42470159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
83, 73
               

               
Conread position:
               
204-543
               

               
Cow position:
               
chrX:34554846-34554513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
19, 12
               

               
Conread position:
               
204-550
               

               
Cow position:
               
chrX:22821540-22821194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
19, 11
               

               
Conread position:
               
204-550
               

               
Cow position:
               
chrX:26276266-26275919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
23, 12
               

               
Conread position:
               
205-552
               

               
Cow position:
               
chrX:11938810-11939146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 124
               

               
Conread position:
               
206-535
               

               
Cow position:
               
chrX:24424279-24424595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
174, 115
               

               
Conread position:
               
208-518
               

               
Cow position:
               
chrX:47362503-47362802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
124, 167
               

               
Conread position:
               
213-550
               

               
Cow position:
               
chrX:21686734-21686394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
215-459
               

               
Cow position:
               
chrX:7710426-7710678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
159, 114
               

               
Conread position:
               
215-494
               

               
Cow position:
               
chrX:16783604-16783325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
165, 115
               

               
Conread position:
               
215-503
               

               
Cow position:
               
chrX:27480513-27480805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
165, 115
               

               
Conread position:
               
215-537
               

               
Cow position:
               
chrX:14222188-14221870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
8, 21
               

               
Conread position:
               
215-543
               

               
Cow position:
               
chrX:46770849-46771185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chrX:16289448-16289782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
122, 78
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chrX:29289691-29289356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 112
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chrX:36198089-36197747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 8
               

               
Conread position:
               
216-465
               

               
Cow position:
               
chrX:21566519-21566261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
216-536
               

               
Cow position:
               
chrX:38936812-38936492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
115, 199
               

               
Conread position:
               
216-537
               

               
Cow position:
               
chrX:3130684-3130372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
7, 11
               

               
Conread position:
               
216-537
               

               
Cow position:
               
chrX:21004796-21004474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
122, 157
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chrX:7572017-7571686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 204
               

               
Conread position:
               
216-550
               

               
Cow position:
               
chrX:19690327-19689998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
103, 119
               

               
Conread position:
               
216-552
               

               
Cow position:
               
chrX:7509251-7508917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
216-556
               

               
Cow position:
               
chrX:11082510-11082842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
217-503
               

               
Cow position:
               
chrX:23340859-23341143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 86
               

               
Conread position:
               
217-535
               

               
Cow position:
               
chrX:35224407-35224093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
217-550
               

               
Cow position:
               
chrX:24234373-24234698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
32, 59
               

               
Conread position:
               
219-527
               

               
Cow position:
               
chrX:161521-161221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
160, 127
               

               
Conread position:
               
219-550
               

               
Cow position:
               
chrX:45968257-45967942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
100, 93
               

               
Conread position:
               
219-552
               

               
Cow position:
               
chrX:26625562-26625899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 173
               

               
Conread position:
               
219-552
               

               
Cow position:
               
chrX:31260505-31260852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
36, 328
               

               
Conread position:
               
221-550
               

               
Cow position:
               
chrX:7646358-7646038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
44, 37
               

               
Conread position:
               
222-550
               

               
Cow position:
               
chrX:4343861-4343529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
5, 109
               

               
Conread position:
               
226-468
               

               
Cow position:
               
chrX:30263360-30263108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
226-577
               

               
Cow position:
               
chrX:755066-754711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
46, 313
               

               
Conread position:
               
228-550
               

               
Cow position:
               
chrX:27106358-27106038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
103, 7
               

               
Conread position:
               
230-534
               

               
Cow position:
               
chrX:45993328-45993006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
22, 108
               

               
Conread position:
               
231-505
               

               
Cow position:
               
chrX:47186227-47186498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
146, 93
               

               
Conread position:
               
231-526
               

               
Cow position:
               
chrX:43779750-43780051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
97, 108
               

               
Conread position:
               
231-537
               

               
Cow position:
               
chrX:1514322-1514610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
186, 28
               

               
Conread position:
               
231-537
               

               
Cow position:
               
chrX:22624573-22624272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
31, 27
               

               
Conread position:
               
231-550
               

               
Cow position:
               
chrX:11856527-11856209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 231
               

               
Conread position:
               
231-550
               

               
Cow position:
               
chrX:27680495-27680183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 170
               

               
Conread position:
               
232-435
               

               
Cow position:
               
chrX:43568015-43567811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
154, 95
               

               
Conread position:
               
232-536
               

               
Cow position:
               
chrX:34238815-34238512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
91, 159
               

               
Conread position:
               
232-566
               

               
Cow position:
               
chrX:4865329-4865015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
234-380
               

               
Cow position:
               
chrX:44095354-44095204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
234-464
               

               
Cow position:
               
chrX:27685343-27685107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
234-535
               

               
Cow position:
               
chrX:47145179-47144880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
161, 84
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chrX:28134432-28134137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
156, 8
               

               
Conread position:
               
234-536
               

               
Cow position:
               
chrX:34441360-34441659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 82
               

               
Conread position:
               
234-550
               

               
Cow position:
               
chrX:6488670-6488366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
234-550
               

               
Cow position:
               
chrX:39545885-39546196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
94, 49
               

               
Conread position:
               
235-448
               

               
Cow position:
               
chrX:27945961-27946183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
235-454
               

               
Cow position:
               
chrX:45875485-45875261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 116
               

               
Conread position:
               
235-491
               

               
Cow position:
               
chrX:39071787-39071527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
138, 94
               

               
Conread position:
               
235-497
               

               
Cow position:
               
chrX:22921414-22921144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
88, 255
               

               
Conread position:
               
235-503
               

               
Cow position:
               
chrX:2933816-2933544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
235-504
               

               
Cow position:
               
chrX:47165793-47166061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
150, 86
               

               
Conread position:
               
235-506
               

               
Cow position:
               
chrX:36061253-36060973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
235-518
               

               
Cow position:
               
chrX:3488798-3489075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
95, 38
               

               
Conread position:
               
235-518
               

               
Cow position:
               
chrX:44656864-44657155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
100, 66
               

               
Conread position:
               
235-525
               

               
Cow position:
               
chrX:33000998-33000706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
30, 23
               

               
Conread position:
               
235-526
               

               
Cow position:
               
chrX:1175890-1176181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
140, 12
               

               
Conread position:
               
235-526
               

               
Cow position:
               
chrX:45149261-45148976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
235-529
               

               
Cow position:
               
chrX:47300810-47301105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
235-529
               

               
Cow position:
               
chrX:47302784-47303081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
155, 147
               

               
Conread position:
               
235-531
               

               
Cow position:
               
chrX:29544784-29545083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 95
               

               
Conread position:
               
235-533
               

               
Cow position:
               
chrX:1055288-1055595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
93, 164
               

               
Conread position:
               
235-535
               

               
Cow position:
               
chrX:46032634-46032929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
143, 94
               

               
Conread position:
               
235-535
               

               
Cow position:
               
chrX:48010697-48010387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:20887548-20887853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:25568297-25568608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
63, 91
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:34543877-34543579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 142
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:42492430-42492723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
180, 94
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:46532402-46532718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:47481889-47481591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
147, 40
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:47967700-47967391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
94, 217
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:48194942-48195249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
101, 93
               

               
Conread position:
               
235-536
               

               
Cow position:
               
chrX:48652628-48652936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
57, 69
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chrX:22822139-22821838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
145, 94
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chrX:35258638-35258941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
122, 94
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chrX:37843810-37843511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
129, 15
               

               
Conread position:
               
235-537
               

               
Cow position:
               
chrX:41271563-41271868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 36
               

               
Conread position:
               
235-538
               

               
Cow position:
               
chrX:47046421-47046730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
134, 24
               

               
Conread position:
               
235-541
               

               
Cow position:
               
chrX:16996585-16996293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
155, 81
               

               
Conread position:
               
235-546
               

               
Cow position:
               
chrX:40809786-40809467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
235-549
               

               
Cow position:
               
chrX:47873243-47873560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
144, 213
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:2467977-2467659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
57, 67
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:4904894-4905209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
44, 85
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:5288060-5288377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:6655170-6655487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 62
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:12309293-12309609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 23
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:15597120-15596818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
175, 82
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:16541564-16541896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
82, 53
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:21593374-21593063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 26
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:21663387-21663089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
173, 62
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:21768900-21768584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
29, 21
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:21833982-21833665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 88
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:22537851-22538174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 94
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:22813155-22812842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
101, 49
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:23300051-23299734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
138, 102
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:23563698-23564017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 113
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:23583654-23583338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
108, 96
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:27514951-27514648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:34454750-34454449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
42, 71
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:35240958-35240644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 67
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:40183261-40183570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
151, 49
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:40544511-40544828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 91
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:40826658-40826967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
92, 84
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:41674197-41673883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
153, 98
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:45403732-45404054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
94, 307
               

               
Conread position:
               
235-550
               

               
Cow position:
               
chrX:46722641-46722961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
67, 60
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chrX:3654701-3654382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
102, 94
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chrX:8731186-8730857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
235-552
               

               
Cow position:
               
chrX:15815177-15814875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
145, 94
               

               
Conread position:
               
235-556
               

               
Cow position:
               
chrX:18650948-18651268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 122
               

               
Conread position:
               
235-562
               

               
Cow position:
               
chrX:21642389-21642712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
151, 82
               

               
Conread position:
               
235-567
               

               
Cow position:
               
chrX:44054895-44054565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
143, 91
               

               
Conread position:
               
235-586
               

               
Cow position:
               
chrX:9360980-9360627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
178, 93
               

               
Conread position:
               
236-536
               

               
Cow position:
               
chrX:32170797-32171090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
92, 23
               

               
Conread position:
               
236-536
               

               
Cow position:
               
chrX:34662754-34663052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
92, 216
               

               
Conread position:
               
236-539
               

               
Cow position:
               
chrX:7178988-7178697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
146, 51
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:18118376-18118684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
236-540
               

               
Cow position:
               
chrX:31449528-31449834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
137, 72
               

               
Conread position:
               
236-550
               

               
Cow position:
               
chrX:27594086-27594402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
151, 93
               

               
Conread position:
               
236-567
               

               
Cow position:
               
chrX:47210745-47211085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
45, 331
               

               
Conread position:
               
237-423
               

               
Cow position:
               
chrX:10516344-10516157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
98, 145
               

               
Conread position:
               
237-526
               

               
Cow position:
               
chrX:25713887-25713598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
82, 121
               

               
Conread position:
               
237-536
               

               
Cow position:
               
chrX:9161667-9161379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
145, 21
               

               
Conread position:
               
237-536
               

               
Cow position:
               
chrX:13868793-13868485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
91, 64
               

               
Conread position:
               
237-550
               

               
Cow position:
               
chrX:15485543-15485848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
149, 47
               

               
Conread position:
               
237-550
               

               
Cow position:
               
chrX:23414277-23414588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
94, 115
               

               
Conread position:
               
237-550
               

               
Cow position:
               
chrX:26440694-26441000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
143, 47
               

               
Conread position:
               
237-550
               

               
Cow position:
               
chrX:31948844-31949151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 199
               

               
Conread position:
               
237-552
               

               
Cow position:
               
chrX:20377062-20376745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
82, 231
               

               
Conread position:
               
237-555
               

               
Cow position:
               
chrX:12826842-12826522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 10
               

               
Conread position:
               
238-476
               

               
Cow position:
               
chrX:12405291-12405539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
238-494
               

               
Cow position:
               
chrX:10129098-10128838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
147, 91
               

               
Conread position:
               
238-537
               

               
Cow position:
               
chrX:29542127-29542428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 234
               

               
Conread position:
               
238-537
               

               
Cow position:
               
chrX:37415982-37416284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
41, 58
               

               
Conread position:
               
239-550
               

               
Cow position:
               
chrX:10428632-10428319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
148, 90
               

               
Conread position:
               
240-550
               

               
Cow position:
               
chrX:22816033-22815721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 18
               

               
Conread position:
               
241-536
               

               
Cow position:
               
chrX:17542047-17541755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
91, 157
               

               
Conread position:
               
241-557
               

               
Cow position:
               
chrX:20710161-20709844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
24, 17
               

               
Conread position:
               
242-531
               

               
Cow position:
               
chrX:31340797-31340501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
243-550
               

               
Cow position:
               
chrX:5638084-5638389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
143, 81
               

               
Conread position:
               
243-550
               

               
Cow position:
               
chrX:42507563-42507867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
167, 83
               

               
Conread position:
               
244-554
               

               
Cow position:
               
chrX:48800622-48800312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
23, 138
               

               
Conread position:
               
245-469
               

               
Cow position:
               
chrX:13785280-13785508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 18
               

               
Conread position:
               
245-550
               

               
Cow position:
               
chrX:16416592-16416288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
246-535
               

               
Cow position:
               
chrX:29875995-29876274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
247-550
               

               
Cow position:
               
chrX:8900105-8899804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
247-550
               

               
Cow position:
               
chrX:46045126-46044824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 55
               

               
Conread position:
               
248-552
               

               
Cow position:
               
chrX:23024789-23024481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
249-550
               

               
Cow position:
               
chrX:11589509-11589812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
131, 84
               

               
Conread position:
               
251-537
               

               
Cow position:
               
chrX:38071689-38071980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
133, 78
               

               
Conread position:
               
252-509
               

               
Cow position:
               
chrX:35822420-35822160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
84, 232
               

               
Conread position:
               
254-507
               

               
Cow position:
               
chrX:48044125-48044379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
86, 99
               

               
Conread position:
               
254-537
               

               
Cow position:
               
chrX:12018366-12018066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 240
               

               
Conread position:
               
255-537
               

               
Cow position:
               
chrX:678482-678777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 130
               

               
Conread position:
               
255-539
               

               
Cow position:
               
chrX:6234376-6234660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
34, 210
               

               
Conread position:
               
258-538
               

               
Cow position:
               
chrX:9425673-9425952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
128, 99
               

               
Conread position:
               
260-550
               

               
Cow position:
               
chrX:1810092-1810381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
58, 77
               

               
Conread position:
               
262-543
               

               
Cow position:
               
chrX:7361799-7362067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
42, 27
               

               
Conread position:
               
262-550
               

               
Cow position:
               
chrX:20743056-20742766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
125, 67
               

               
Conread position:
               
263-514
               

               
Cow position:
               
chrX:48035490-48035241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 64
               

               
Conread position:
               
263-550
               

               
Cow position:
               
chrX:19022240-19022529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
94, 66
               

               
Conread position:
               
264-535
               

               
Cow position:
               
chrX:26875817-26876089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 207
               

               
Conread position:
               
264-552
               

               
Cow position:
               
chrX:34192734-34192455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
265-550
               

               
Cow position:
               
chrX:11664245-11663958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
265-550
               

               
Cow position:
               
chrX:22857105-22856812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 113
               

               
Conread position:
               
265-550
               

               
Cow position:
               
chrX:24968749-24969036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
265-550
               

               
Cow position:
               
chrX:30822651-30822364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
122, 64
               

               
Conread position:
               
267-551
               

               
Cow position:
               
chrX:35610053-35609765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
69, 202
               

               
Conread position:
               
268-533
               

               
Cow position:
               
chrX:41166902-41167170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
63, 200
               

               
Conread position:
               
268-550
               

               
Cow position:
               
chrX:19188991-19188716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
111, 53
               

               
Conread position:
               
268-550
               

               
Cow position:
               
chrX:37836646-37836366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
110, 65
               

               
Conread position:
               
269-550
               

               
Cow position:
               
chrX:10437609-10437885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
148, 98
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:5288625-5288907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:15531095-15531375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:18461914-18462195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:20021625-20021343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
61, 76
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:25288617-25288899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:30171648-30171930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
270-550
               

               
Cow position:
               
chrX:30752836-30752554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
272-552
               

               
Cow position:
               
chrX:42875039-42874756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 57
               

               
Conread position:
               
273-550
               

               
Cow position:
               
chrX:10293103-10293382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
58, 73
               

               
Conread position:
               
273-550
               

               
Cow position:
               
chrX:15094425-15094146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 56
               

               
Conread position:
               
273-550
               

               
Cow position:
               
chrX:27403887-27404166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
94, 56
               

               
Conread position:
               
273-552
               

               
Cow position:
               
chrX:34991091-34990819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
58, 198
               

               
Conread position:
               
275-550
               

               
Cow position:
               
chrX:40648039-40647758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
105, 146
               

               
Conread position:
               
275-550
               

               
Cow position:
               
chrX:41199159-41198884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 177
               

               
Conread position:
               
275-550
               

               
Cow position:
               
chrX:48328330-48328607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
276-552
               

               
Cow position:
               
chrX:40789264-40788982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
56, 265
               

               
Conread position:
               
278-547
               

               
Cow position:
               
chrX:11675114-11674847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
278-550
               

               
Cow position:
               
chrX:28105968-28105701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
101, 60
               

               
Conread position:
               
280-550
               

               
Cow position:
               
chrX:23122435-23122164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
281-533
               

               
Cow position:
               
chrX:39938476-39938728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
121, 105
               

               
Conread position:
               
281-543
               

               
Cow position:
               
chrX:10123306-10123560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
129, 72
               

               
Conread position:
               
281-558
               

               
Cow position:
               
chrX:42461697-42461974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
99, 161
               

               
Conread position:
               
281-567
               

               
Cow position:
               
chrX:32127946-32128215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
68, 6
               

               
Conread position:
               
284-554
               

               
Cow position:
               
chrX:28835858-28836128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
34, 48
               

               
Conread position:
               
285-534
               

               
Cow position:
               
chrX:36961684-36961428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
95, 44
               

               
Conread position:
               
285-546
               

               
Cow position:
               
chrX:47248741-47249004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
36, 117
               

               
Conread position:
               
285-550
               

               
Cow position:
               
chrX:34754149-34754412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
89, 47
               

               
Conread position:
               
285-551
               

               
Cow position:
               
chrX:19015480-19015221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
286-537
               

               
Cow position:
               
chrX:40567640-40567390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
60, 41
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:238832-239098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 42
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:1749463-1749729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:2417438-2417704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:4621908-4622174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:9018257-9018523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:12001101-12001367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:13396207-13396472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:16286255-16285989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:19473114-19473381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:23827635-23827369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:24904130-24903864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:28057749-28058015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:29508823-29508557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:37497401-37497667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:39667147-39667413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-550
               

               
Cow position:
               
chrX:48165569-48165303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
99, 43
               

               
Conread position:
               
286-552
               

               
Cow position:
               
chrX:11746888-11746620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
94, 62
               

               
Conread position:
               
286-552
               

               
Cow position:
               
chrX:16789813-16790059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
96, 37
               

               
Conread position:
               
287-536
               

               
Cow position:
               
chrX:47191366-47191607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 104
               

               
Conread position:
               
287-537
               

               
Cow position:
               
chrX:8070658-8070909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
87, 42
               

               
Conread position:
               
287-538
               

               
Cow position:
               
chrX:15139506-15139754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
93, 40
               

               
Conread position:
               
287-550
               

               
Cow position:
               
chrX:14900689-14900941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
287-550
               

               
Cow position:
               
chrX:28157539-28157265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 13
               

               
Conread position:
               
287-552
               

               
Cow position:
               
chrX:9855339-9855078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
59, 87
               

               
Conread position:
               
287-552
               

               
Cow position:
               
chrX:9954180-9953919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
41, 87
               

               
Conread position:
               
287-552
               

               
Cow position:
               
chrX:25232634-25232368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
44, 171
               

               
Conread position:
               
287-552
               

               
Cow position:
               
chrX:42994654-42994392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 99
               

               
Conread position:
               
287-558
               

               
Cow position:
               
chrX:43049384-43049114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
99, 40
               

               
Conread position:
               
287-596
               

               
Cow position:
               
chrX:35681383-35681083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
59, 182
               

               
Conread position:
               
288-501
               

               
Cow position:
               
chrX:37750214-37750427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 101
               

               
Conread position:
               
288-537
               

               
Cow position:
               
chrX:2186294-2186049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
288-552
               

               
Cow position:
               
chrX:38840924-38840666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
91, 14
               

               
Conread position:
               
289-536
               

               
Cow position:
               
chrX:23970418-23970180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
290-503
               

               
Cow position:
               
chrX:19079763-19079980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
97, 39
               

               
Conread position:
               
290-535
               

               
Cow position:
               
chrX:26286019-26285772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
49, 111
               

               
Conread position:
               
291-536
               

               
Cow position:
               
chrX:18293959-18293723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
291-537
               

               
Cow position:
               
chrX:42086883-42086652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
291-560
               

               
Cow position:
               
chrX:20791778-20792049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
38, 177
               

               
Conread position:
               
292-567
               

               
Cow position:
               
chrX:41743950-41743672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
47, 167
               

               
Conread position:
               
292-568
               

               
Cow position:
               
chrX:9997298-9997569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
57, 180
               

               
Conread position:
               
295-526
               

               
Cow position:
               
chrX:30832819-30833044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
79, 32
               

               
Conread position:
               
295-533
               

               
Cow position:
               
chrX:38439514-38439268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
295-550
               

               
Cow position:
               
chrX:10306708-10306450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
33, 39
               

               
Conread position:
               
295-550
               

               
Cow position:
               
chrX:11581966-11581714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
297-532
               

               
Cow position:
               
chrX:40116448-40116216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 58
               

               
Conread position:
               
300-550
               

               
Cow position:
               
chrX:48371119-48370876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
28, 75
               

               
Conread position:
               
301-531
               

               
Cow position:
               
chrX:17908261-17908487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
90, 66
               

               
Conread position:
               
301-536
               

               
Cow position:
               
chrX:20752281-20752051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
79, 36
               

               
Conread position:
               
301-550
               

               
Cow position:
               
chrX:44053287-44053038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 163
               

               
Conread position:
               
302-520
               

               
Cow position:
               
chrX:45875024-45874806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 48
               

               
Conread position:
               
302-546
               

               
Cow position:
               
chrX:45015602-45015369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
78, 31
               

               
Conread position:
               
302-550
               

               
Cow position:
               
chrX:36249835-36250082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 45
               

               
Conread position:
               
302-572
               

               
Cow position:
               
chrX:10096058-10095786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
34, 122
               

               
Conread position:
               
305-550
               

               
Cow position:
               
chrX:14925024-14924780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
75, 166
               

               
Conread position:
               
305-550
               

               
Cow position:
               
chrX:15008407-15008652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 41
               

               
Conread position:
               
305-552
               

               
Cow position:
               
chrX:2029415-2029168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
17, 44
               

               
Conread position:
               
305-552
               

               
Cow position:
               
chrX:23497644-23497885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
41, 144
               

               
Conread position:
               
306-550
               

               
Cow position:
               
chrX:6640128-6639904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
306-550
               

               
Cow position:
               
chrX:23109783-23109539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
306-552
               

               
Cow position:
               
chrX:20583044-20582808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
306-557
               

               
Cow position:
               
chrX:4750281-4750525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
25, 169
               

               
Conread position:
               
306-594
               

               
Cow position:
               
chrX:29509417-29509708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
33, 13
               

               
Conread position:
               
308-567
               

               
Cow position:
               
chrX:28098135-28097888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 81
               

               
Conread position:
               
310-558
               

               
Cow position:
               
chrX:4942744-4942979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
244, 47
               

               
Conread position:
               
311-536
               

               
Cow position:
               
chrX:14846053-14846282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
311-550
               

               
Cow position:
               
chrX:1946695-1946941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
311-550
               

               
Cow position:
               
chrX:19333148-19333389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
74, 18
               

               
Conread position:
               
311-550
               

               
Cow position:
               
chrX:43984194-43983951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
311-550
               

               
Cow position:
               
chrX:45904199-45903958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
312-533
               

               
Cow position:
               
chrX:35409676-35409460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
30, 9
               

               
Conread position:
               
312-537
               

               
Cow position:
               
chrX:13265607-13265829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
18, 9
               

               
Conread position:
               
312-552
               

               
Cow position:
               
chrX:45566659-45566408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
16, 124
               

               
Conread position:
               
317-533
               

               
Cow position:
               
chrX:25848922-25848711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
317-550
               

               
Cow position:
               
chrX:30484189-30484425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 99
               

               
Conread position:
               
317-552
               

               
Cow position:
               
chrX:2648343-2648572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
78, 14
               

               
Conread position:
               
317-552
               

               
Cow position:
               
chrX:17271274-17271511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
33, 16
               

               
Conread position:
               
318-550
               

               
Cow position:
               
chrX:23571787-23572020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
67, 24
               

               
Conread position:
               
319-517
               

               
Cow position:
               
chrX:1505720-1505523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
20, 50
               

               
Conread position:
               
319-537
               

               
Cow position:
               
chrX:1728417-1728629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
319-552
               

               
Cow position:
               
chrX:18456410-18456170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
60, 223
               

               
Conread position:
               
320-511
               

               
Cow position:
               
chrX:40321873-40321678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 9
               

               
Conread position:
               
320-526
               

               
Cow position:
               
chrX:9226970-9227181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
68, 36
               

               
Conread position:
               
320-550
               

               
Cow position:
               
chrX:13245602-13245371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
322-533
               

               
Cow position:
               
chrX:24201192-24200984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
322-537
               

               
Cow position:
               
chrX:24132143-24132360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
15, 109
               

               
Conread position:
               
322-550
               

               
Cow position:
               
chrX:25458624-25458857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
322-550
               

               
Cow position:
               
chrX:32020114-32020342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
51, 25
               

               
Conread position:
               
323-558
               

               
Cow position:
               
chrX:18216291-18216046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
324-500
               

               
Cow position:
               
chrX:48669080-48669256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 19
               

               
Conread position:
               
324-552
               

               
Cow position:
               
chrX:11562161-11561932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 203
               

               
Conread position:
               
324-552
               

               
Cow position:
               
chrX:36840874-36840651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 53
               

               
Conread position:
               
325-552
               

               
Cow position:
               
chrX:33827013-33827244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 178
               

               
Conread position:
               
326-552
               

               
Cow position:
               
chrX:7513513-7513294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
326-552
               

               
Cow position:
               
chrX:11806011-11806239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
60, 211
               

               
Conread position:
               
326-552
               

               
Cow position:
               
chrX:33803002-33803235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 180
               

               
Conread position:
               
327-508
               

               
Cow position:
               
chrX:7336830-7336646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 134
               

               
Conread position:
               
327-550
               

               
Cow position:
               
chrX:3147200-3146976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
86, 66
               

               
Conread position:
               
327-552
               

               
Cow position:
               
chrX:4482970-4482740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
9, 139
               

               
Conread position:
               
327-558
               

               
Cow position:
               
chrX:40540140-40540374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
59, 201
               

               
Conread position:
               
328-510
               

               
Cow position:
               
chrX:14003640-14003825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
18, 179
               

               
Conread position:
               
328-549
               

               
Cow position:
               
chrX:2700812-2701031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
17, 42
               

               
Conread position:
               
329-536
               

               
Cow position:
               
chrX:24318064-24317853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 175
               

               
Conread position:
               
329-536
               

               
Cow position:
               
chrX:39701223-39701018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
8, 78
               

               
Conread position:
               
329-550
               

               
Cow position:
               
chrX:17042693-17042470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
329-553
               

               
Cow position:
               
chrX:19019106-19019335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
26, 113
               

               
Conread position:
               
331-536
               

               
Cow position:
               
chrX:25419160-25419370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
331-552
               

               
Cow position:
               
chrX:1978508-1978283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 18
               

               
Conread position:
               
332-537
               

               
Cow position:
               
chrX:35284616-35284414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
54, 134
               

               
Conread position:
               
332-577
               

               
Cow position:
               
chrX:35387906-35388154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 205
               

               
Conread position:
               
333-536
               

               
Cow position:
               
chrX:21665599-21665802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
333-550
               

               
Cow position:
               
chrX:42338951-42339156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
333-554
               

               
Cow position:
               
chrX:6607406-6607197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
334-514
               

               
Cow position:
               
chrX:31256860-31256681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
52, 114
               

               
Conread position:
               
334-523
               

               
Cow position:
               
chrX:7863576-7863768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 125
               

               
Conread position:
               
334-552
               

               
Cow position:
               
chrX:8517863-8517654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
155, 52
               

               
Conread position:
               
334-552
               

               
Cow position:
               
chrX:8558468-8558685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
63, 200
               

               
Conread position:
               
336-472
               

               
Cow position:
               
chrX:10366234-10366374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
336-538
               

               
Cow position:
               
chrX:47454122-47453916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
337-535
               

               
Cow position:
               
chrX:42587437-42587636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 154
               

               
Conread position:
               
337-550
               

               
Cow position:
               
chrX:12116037-12115818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 144
               

               
Conread position:
               
337-550
               

               
Cow position:
               
chrX:35042216-35041999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
48, 202
               

               
Conread position:
               
337-552
               

               
Cow position:
               
chrX:10373306-10373085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
153, 60
               

               
Conread position:
               
337-553
               

               
Cow position:
               
chrX:41403970-41403749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
43, 203
               

               
Conread position:
               
337-553
               

               
Cow position:
               
chrX:41410518-41410297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
43, 203
               

               
Conread position:
               
341-535
               

               
Cow position:
               
chrX:46315390-46315588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
45, 163
               

               
Conread position:
               
344-548
               

               
Cow position:
               
chrX:7425453-7425247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 191
               

               
Conread position:
               
347-537
               

               
Cow position:
               
chrX:44063739-44063926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
63, 49
               

               
Conread position:
               
347-552
               

               
Cow position:
               
chrX:33020465-33020264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 39
               

               
Conread position:
               
348-533
               

               
Cow position:
               
chrX:25411821-25411631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
32, 83
               

               
Conread position:
               
350-552
               

               
Cow position:
               
chrX:25945854-25946059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 176
               

               
Conread position:
               
353-550
               

               
Cow position:
               
chrX:12249777-12249585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
33, 106
               

               
Conread position:
               
353-550
               

               
Cow position:
               
chrX:33632143-33631956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
355-537
               

               
Cow position:
               
chrX:46429887-46430067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
40, 13
               

               
Conread position:
               
355-552
               

               
Cow position:
               
chrX:44731571-44731372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 174
               

               
Conread position:
               
356-539
               

               
Cow position:
               
chrX:46984525-46984708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
54, 34
               

               
Conread position:
               
366-547
               

               
Cow position:
               
chrX:25036740-25036918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 8
               

               
Conread position:
               
371-550
               

               
Cow position:
               
chrX:42499071-42499249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
371-552
               

               
Cow position:
               
chrX:37906916-37906738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
160, 20
               

               
Conread position:
               
372-525
               

               
Cow position:
               
chrX:34270354-34270209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 90
               

               
Conread position:
               
377-517
               

               
Cow position:
               
chrX:24149588-24149450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
377-555
               

               
Cow position:
               
chrX:7806329-7806152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
377-558
               

               
Cow position:
               
chrX:28111454-28111277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
21, 85
               

               
Conread position:
               
377-571
               

               
Cow position:
               
chrX:32978310-32978503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
162, 14
               

               
Conread position:
               
378-526
               

               
Cow position:
               
chrX:43973510-43973360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
378-541
               

               
Cow position:
               
chrX:16324018-16324177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
32, 69
               

               
Conread position:
               
378-548
               

               
Cow position:
               
chrX:28846935-28847097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
32, 67
               

               
Conread position:
               
378-550
               

               
Cow position:
               
chrX:2206604-2206764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
38, 52
               

               
Conread position:
               
378-550
               

               
Cow position:
               
chrX:38967594-38967430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
39, 56
               

               
Conread position:
               
378-550
               

               
Cow position:
               
chrX:42855361-42855188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
39, 158
               

               
Conread position:
               
378-558
               

               
Cow position:
               
chrX:31745096-31745275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
379-550
               

               
Cow position:
               
chrX:47243332-47243499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
95, 30
               

               
Conread position:
               
380-533
               

               
Cow position:
               
chrX:29770229-29770384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
380-550
               

               
Cow position:
               
chrX:40452265-40452433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
384-544
               

               
Cow position:
               
chrX:877086-877240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
27, 51
               

               
Conread position:
               
384-550
               

               
Cow position:
               
chrX:36778352-36778186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
384-555
               

               
Cow position:
               
chrX:6012164-6012332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
391-550
               

               
Cow position:
               
chrX:48536729-48536885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
391-555
               

               
Cow position:
               
chrX:34385267-34385104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
26, 143
               

               
Conread position:
               
393-550
               

               
Cow position:
               
chrX:25238108-25237957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
17, 69
               

               
Conread position:
               
396-552
               

               
Cow position:
               
chrX:45043493-45043336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 140
               

               
Conread position:
               
398-534
               

               
Cow position:
               
chrX:25163743-25163612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
398-558
               

               
Cow position:
               
chrX:25283224-25283375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
156, 59
               

               
Conread position:
               
400-550
               

               
Cow position:
               
chrX:21795420-21795276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
20, 66
               

               
Conread position:
               
401-533
               

               
Cow position:
               
chrX:37299523-37299389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
401-538
               

               
Cow position:
               
chrX:31473450-31473313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
401-552
               

               
Cow position:
               
chrX:10107050-10107197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
402-521
               

               
Cow position:
               
chrX:18812176-18812061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
403-536
               

               
Cow position:
               
chrX:23017926-23017794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
405-537
               

               
Cow position:
               
chrX:25404414-25404545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
409-550
               

               
Cow position:
               
chrX:6659294-6659153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 87
               

               
Conread position:
               
409-550
               

               
Cow position:
               
chrX:45787566-45787434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
409-552
               

               
Cow position:
               
chrX:3161099-3161238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
79, 52
               

               
Conread position:
               
409-552
               

               
Cow position:
               
chrX:7382238-7382101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
409-567
               

               
Cow position:
               
chrX:22873317-22873161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
145, 124
               

               
Conread position:
               
410-552
               

               
Cow position:
               
chrX:2523811-2523952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
18, 124
               

               
Conread position:
               
410-567
               

               
Cow position:
               
chrX:16846974-16847130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 74
               

               
Conread position:
               
416-534
               

               
Cow position:
               
chrX:26619453-26619570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
416-536
               

               
Cow position:
               
chrX:38114099-38113979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
416-537
               

               
Cow position:
               
chrX:37067248-37067127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
416-548
               

               
Cow position:
               
chrX:30729492-30729623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
72, 118
               

               
Conread position:
               
416-550
               

               
Cow position:
               
chrX:20653307-20653175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
416-550
               

               
Cow position:
               
chrX:25618000-25618132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
416-550
               

               
Cow position:
               
chrX:26883224-26883354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
417-550
               

               
Cow position:
               
chrX:32870876-32871006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
419-550
               

               
Cow position:
               
chrX:45420764-45420893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
420-535
               

               
Cow position:
               
chrX:16531901-16531790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
420-560
               

               
Cow position:
               
chrX:19023344-19023209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
425-537
               

               
Cow position:
               
chrX:5856424-5856536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
425-552
               

               
Cow position:
               
chrX:33519520-33519395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
426-550
               

               
Cow position:
               
chrX:33205097-33205212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
428-552
               

               
Cow position:
               
chrX:29193903-29193786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
43, 23
               

               
Conread position:
               
437-536
               

               
Cow position:
               
chrX:919402-919504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
437-536
               

               
Cow position:
               
chrX:22115391-22115490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.