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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8049N19.3
        

               
Conread position:
               
295-720
               

               
Cow position:
               
chr27:20798978-20799406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 87
               

               
Conread position:
               
304-523
               

               
Cow position:
               
chr27:9333241-9333466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
304-797
               

               
Cow position:
               
chr27:24295686-24295180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 250
               

               
Conread position:
               
304-830
               

               
Cow position:
               
chr27:29811875-29812422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 206
               

               
Conread position:
               
304-1015
               

               
Cow position:
               
chr27:12549706-12548960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
749
               

               
Alignm identity:
               
512
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 674
               

               
Conread position:
               
304-1141
               

               
Cow position:
               
chr27:1354192-1353313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
883
               

               
Alignm identity:
               
638
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 469
               

               
Conread position:
               
305-540
               

               
Cow position:
               
chr27:10986619-10986377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
305-654
               

               
Cow position:
               
chr27:4389612-4389966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 52
               

               
Conread position:
               
324-717
               

               
Cow position:
               
chr27:5830516-5830117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
160, 174
               

               
Conread position:
               
325-1102
               

               
Cow position:
               
chr27:21668569-21669341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
793
               

               
Alignm identity:
               
523
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 125
               

               
Conread position:
               
327-1157
               

               
Cow position:
               
chr27:15316059-15315240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
849
               

               
Alignm identity:
               
623
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
249, 167
               

               
Conread position:
               
329-499
               

               
Cow position:
               
chr27:3235332-3235504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
329-642
               

               
Cow position:
               
chr27:16117560-16117244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
218, 55
               

               
Conread position:
               
329-682
               

               
Cow position:
               
chr27:27527638-27527994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
328, 0
               

               
Conread position:
               
329-996
               

               
Cow position:
               
chr27:1058110-1058799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
698
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 50
               

               
Conread position:
               
330-511
               

               
Cow position:
               
chr27:29891215-29891391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
331-505
               

               
Cow position:
               
chr27:20135439-20135613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
331-563
               

               
Cow position:
               
chr27:19482650-19482419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
77, 61
               

               
Conread position:
               
331-831
               

               
Cow position:
               
chr27:10384034-10384559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
381
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 158
               

               
Conread position:
               
331-854
               

               
Cow position:
               
chr27:30921718-30921185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
393
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
363, 354
               

               
Conread position:
               
333-443
               

               
Cow position:
               
chr27:16076103-16075994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
333-510
               

               
Cow position:
               
chr27:28924485-28924660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 59
               

               
Conread position:
               
333-515
               

               
Cow position:
               
chr27:5914543-5914721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
333-541
               

               
Cow position:
               
chr27:25112772-25112973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
333-573
               

               
Cow position:
               
chr27:3231932-3231694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
333-620
               

               
Cow position:
               
chr27:13843976-13843689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 103
               

               
Conread position:
               
333-635
               

               
Cow position:
               
chr27:20135089-20134786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 102
               

               
Conread position:
               
333-641
               

               
Cow position:
               
chr27:4509148-4508831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
53, 149
               

               
Conread position:
               
333-663
               

               
Cow position:
               
chr27:27728887-27728558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 49
               

               
Conread position:
               
333-678
               

               
Cow position:
               
chr27:23658170-23658516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
153, 49
               

               
Conread position:
               
333-692
               

               
Cow position:
               
chr27:21452051-21452422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 23
               

               
Conread position:
               
333-693
               

               
Cow position:
               
chr27:5423818-5424184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 87
               

               
Conread position:
               
333-693
               

               
Cow position:
               
chr27:17462567-17462949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 54
               

               
Conread position:
               
333-751
               

               
Cow position:
               
chr27:9262672-9262243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 98
               

               
Conread position:
               
333-752
               

               
Cow position:
               
chr27:31250284-31250705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 97
               

               
Conread position:
               
333-767
               

               
Cow position:
               
chr27:10283739-10284201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
333-777
               

               
Cow position:
               
chr27:3989174-3988718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 309
               

               
Conread position:
               
333-777
               

               
Cow position:
               
chr27:18740987-18741422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 40
               

               
Conread position:
               
333-780
               

               
Cow position:
               
chr27:8973054-8973508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
340, 40
               

               
Conread position:
               
333-780
               

               
Cow position:
               
chr27:12751136-12751579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 46
               

               
Conread position:
               
333-782
               

               
Cow position:
               
chr27:526517-526977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 46
               

               
Conread position:
               
333-782
               

               
Cow position:
               
chr27:19487380-19486916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 222
               

               
Conread position:
               
333-787
               

               
Cow position:
               
chr27:4331133-4330686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
361, 111
               

               
Conread position:
               
333-787
               

               
Cow position:
               
chr27:5836427-5836902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 137
               

               
Conread position:
               
333-787
               

               
Cow position:
               
chr27:9989275-9988811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
468
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
157, 379
               

               
Conread position:
               
333-787
               

               
Cow position:
               
chr27:12239751-12240215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 459
               

               
Conread position:
               
333-787
               

               
Cow position:
               
chr27:15349241-15349706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 86
               

               
Conread position:
               
333-787
               

               
Cow position:
               
chr27:19423770-19423301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
333-789
               

               
Cow position:
               
chr27:12190880-12191351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 88
               

               
Conread position:
               
333-792
               

               
Cow position:
               
chr27:13901729-13902200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 461
               

               
Conread position:
               
333-792
               

               
Cow position:
               
chr27:19523104-19522632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
164, 463
               

               
Conread position:
               
333-799
               

               
Cow position:
               
chr27:2557388-2556896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
333-818
               

               
Cow position:
               
chr27:6292952-6292437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 253
               

               
Conread position:
               
333-822
               

               
Cow position:
               
chr27:16551024-16550525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
217, 29
               

               
Conread position:
               
333-830
               

               
Cow position:
               
chr27:2332106-2332623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 223
               

               
Conread position:
               
333-830
               

               
Cow position:
               
chr27:21349183-21349698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 212
               

               
Conread position:
               
333-876
               

               
Cow position:
               
chr27:24558885-24559448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
569
               

               
Alignm identity:
               
396
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 156
               

               
Conread position:
               
333-878
               

               
Cow position:
               
chr27:30641205-30640672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
216, 48
               

               
Conread position:
               
333-888
               

               
Cow position:
               
chr27:26856646-26857214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
445
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 408
               

               
Conread position:
               
333-903
               

               
Cow position:
               
chr27:30677483-30676879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
610
               

               
Alignm identity:
               
417
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 87
               

               
Conread position:
               
333-908
               

               
Cow position:
               
chr27:26033917-26033339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
590
               

               
Alignm identity:
               
388
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
172, 58
               

               
Conread position:
               
333-989
               

               
Cow position:
               
chr27:28081738-28082441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
713
               

               
Alignm identity:
               
466
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 40
               

               
Conread position:
               
333-1000
               

               
Cow position:
               
chr27:20811022-20811712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
696
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 562
               

               
Conread position:
               
333-1015
               

               
Cow position:
               
chr27:4882173-4881463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
715
               

               
Alignm identity:
               
496
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
334, 567
               

               
Conread position:
               
333-1048
               

               
Cow position:
               
chr27:15272471-15271746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
533
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
329, 438
               

               
Conread position:
               
333-1054
               

               
Cow position:
               
chr27:8942130-8942870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
753
               

               
Alignm identity:
               
530
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 74
               

               
Conread position:
               
333-1060
               

               
Cow position:
               
chr27:25784158-25783441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
747
               

               
Alignm identity:
               
526
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 307
               

               
Conread position:
               
333-1067
               

               
Cow position:
               
chr27:21407986-21408756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
775
               

               
Alignm identity:
               
546
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 117
               

               
Conread position:
               
333-1127
               

               
Cow position:
               
chr27:19388584-19387769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
835
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 56
               

               
Conread position:
               
333-1136
               

               
Cow position:
               
chr27:11481537-11482360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
840
               

               
Alignm identity:
               
556
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 21
               

               
Conread position:
               
333-1148
               

               
Cow position:
               
chr27:15871726-15870885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
847
               

               
Alignm identity:
               
593
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 147
               

               
Conread position:
               
334-518
               

               
Cow position:
               
chr27:31371245-31371434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
334-692
               

               
Cow position:
               
chr27:5925884-5926247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 12
               

               
Conread position:
               
334-813
               

               
Cow position:
               
chr27:12650063-12650565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
203, 347
               

               
Conread position:
               
336-691
               

               
Cow position:
               
chr27:8201545-8201899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 280
               

               
Conread position:
               
337-647
               

               
Cow position:
               
chr27:12112155-12112465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
59, 45
               

               
Conread position:
               
337-807
               

               
Cow position:
               
chr27:20289991-20289513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
189, 48
               

               
Conread position:
               
337-1120
               

               
Cow position:
               
chr27:1636389-1637173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
811
               

               
Alignm identity:
               
562
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 158
               

               
Conread position:
               
338-569
               

               
Cow position:
               
chr27:17565053-17564828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
338-767
               

               
Cow position:
               
chr27:21283641-21283198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 327
               

               
Conread position:
               
338-789
               

               
Cow position:
               
chr27:3729749-3730218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 47
               

               
Conread position:
               
339-631
               

               
Cow position:
               
chr27:31268826-31269119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
339-779
               

               
Cow position:
               
chr27:20865971-20866418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 58
               

               
Conread position:
               
339-884
               

               
Cow position:
               
chr27:1189255-1189826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
573
               

               
Alignm identity:
               
414
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 42
               

               
Conread position:
               
339-884
               

               
Cow position:
               
chr27:9090241-9090814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
437
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 118
               

               
Conread position:
               
341-822
               

               
Cow position:
               
chr27:30561482-30560970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
197, 51
               

               
Conread position:
               
341-831
               

               
Cow position:
               
chr27:11403466-11402963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 469
               

               
Conread position:
               
342-479
               

               
Cow position:
               
chr27:13273167-13273304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
342-514
               

               
Cow position:
               
chr27:1884778-1884607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
342-516
               

               
Cow position:
               
chr27:19931942-19931769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
342-518
               

               
Cow position:
               
chr27:19646869-19647045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
109, 86
               

               
Conread position:
               
342-523
               

               
Cow position:
               
chr27:707509-707328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
40, 153
               

               
Conread position:
               
342-530
               

               
Cow position:
               
chr27:24260218-24260034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
342-540
               

               
Cow position:
               
chr27:22013837-22014038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
46, 83
               

               
Conread position:
               
342-563
               

               
Cow position:
               
chr27:25964329-25964111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
60, 37
               

               
Conread position:
               
342-570
               

               
Cow position:
               
chr27:27683478-27683703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 12
               

               
Conread position:
               
342-591
               

               
Cow position:
               
chr27:22400335-22400087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 153
               

               
Conread position:
               
342-631
               

               
Cow position:
               
chr27:8569170-8569470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 265
               

               
Conread position:
               
342-632
               

               
Cow position:
               
chr27:27192547-27192251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
212, 51
               

               
Conread position:
               
342-652
               

               
Cow position:
               
chr27:1502108-1502416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 0
               

               
Conread position:
               
342-661
               

               
Cow position:
               
chr27:4294855-4295176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
208, 38
               

               
Conread position:
               
342-679
               

               
Cow position:
               
chr27:5928065-5928420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
342-679
               

               
Cow position:
               
chr27:24202944-24202606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
342-680
               

               
Cow position:
               
chr27:10306718-10307058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 17
               

               
Conread position:
               
342-687
               

               
Cow position:
               
chr27:16428270-16428625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 41
               

               
Conread position:
               
342-691
               

               
Cow position:
               
chr27:26436147-26436493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 262
               

               
Conread position:
               
342-693
               

               
Cow position:
               
chr27:14381049-14381404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 284
               

               
Conread position:
               
342-701
               

               
Cow position:
               
chr27:30446782-30446418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 253
               

               
Conread position:
               
342-718
               

               
Cow position:
               
chr27:26087778-26087398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 73
               

               
Conread position:
               
342-724
               

               
Cow position:
               
chr27:17923523-17923915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
220, 337
               

               
Conread position:
               
342-760
               

               
Cow position:
               
chr27:25971062-25970637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 127
               

               
Conread position:
               
342-761
               

               
Cow position:
               
chr27:26142350-26141917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 0
               

               
Conread position:
               
342-772
               

               
Cow position:
               
chr27:15645098-15645544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
41, 272
               

               
Conread position:
               
342-773
               

               
Cow position:
               
chr27:13442282-13442727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 0
               

               
Conread position:
               
342-777
               

               
Cow position:
               
chr27:26598431-26597984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 336
               

               
Conread position:
               
342-777
               

               
Cow position:
               
chr27:27930877-27931314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 289
               

               
Conread position:
               
342-779
               

               
Cow position:
               
chr27:16984352-16983893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
342-782
               

               
Cow position:
               
chr27:3239458-3239909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 50
               

               
Conread position:
               
342-785
               

               
Cow position:
               
chr27:26545370-26545825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
325, 78
               

               
Conread position:
               
342-785
               

               
Cow position:
               
chr27:26934820-26935272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 158
               

               
Conread position:
               
342-785
               

               
Cow position:
               
chr27:28984381-28984843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 170
               

               
Conread position:
               
342-787
               

               
Cow position:
               
chr27:15033277-15032821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
353, 0
               

               
Conread position:
               
342-809
               

               
Cow position:
               
chr27:777269-776811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 13
               

               
Conread position:
               
342-810
               

               
Cow position:
               
chr27:11413285-11412790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 85
               

               
Conread position:
               
342-810
               

               
Cow position:
               
chr27:12261925-12261460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
342-816
               

               
Cow position:
               
chr27:26945446-26944956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 40
               

               
Conread position:
               
342-818
               

               
Cow position:
               
chr27:25885414-25885879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 88
               

               
Conread position:
               
342-822
               

               
Cow position:
               
chr27:12282299-12282809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 40
               

               
Conread position:
               
342-824
               

               
Cow position:
               
chr27:9372061-9371559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 483
               

               
Conread position:
               
342-824
               

               
Cow position:
               
chr27:24055298-24055796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 233
               

               
Conread position:
               
342-831
               

               
Cow position:
               
chr27:25800596-25800115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
368, 331
               

               
Conread position:
               
342-880
               

               
Cow position:
               
chr27:23454588-23455162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
577
               

               
Alignm identity:
               
422
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 37
               

               
Conread position:
               
342-898
               

               
Cow position:
               
chr27:4665031-4664457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
400
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
156, 47
               

               
Conread position:
               
342-918
               

               
Cow position:
               
chr27:815921-815321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
605
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 481
               

               
Conread position:
               
342-923
               

               
Cow position:
               
chr27:13182675-13182093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
342-940
               

               
Cow position:
               
chr27:11256072-11255461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
457
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
342-984
               

               
Cow position:
               
chr27:24999181-24999850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
673
               

               
Alignm identity:
               
495
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 152
               

               
Conread position:
               
342-1034
               

               
Cow position:
               
chr27:537013-536305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
718
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 190
               

               
Conread position:
               
342-1035
               

               
Cow position:
               
chr27:27063900-27064600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
717
               

               
Alignm identity:
               
511
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
352, 63
               

               
Conread position:
               
342-1103
               

               
Cow position:
               
chr27:13317409-13318207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
580
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 12
               

               
Conread position:
               
342-1119
               

               
Cow position:
               
chr27:16787391-16786585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
820
               

               
Alignm identity:
               
589
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 85
               

               
Conread position:
               
342-1122
               

               
Cow position:
               
chr27:7958283-7959082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
586
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 65
               

               
Conread position:
               
342-1126
               

               
Cow position:
               
chr27:11434777-11435580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
598
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 75
               

               
Conread position:
               
343-680
               

               
Cow position:
               
chr27:4835033-4835359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
344-663
               

               
Cow position:
               
chr27:30476631-30476295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
344-777
               

               
Cow position:
               
chr27:13976841-13977284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 35
               

               
Conread position:
               
344-1124
               

               
Cow position:
               
chr27:13876278-13875482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
814
               

               
Alignm identity:
               
607
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 35
               

               
Conread position:
               
345-456
               

               
Cow position:
               
chr27:30176895-30176784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-473
               

               
Cow position:
               
chr27:25278829-25278701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-502
               

               
Cow position:
               
chr27:21609284-21609446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
345-511
               

               
Cow position:
               
chr27:13644873-13645039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-515
               

               
Cow position:
               
chr27:26300757-26300587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
345-538
               

               
Cow position:
               
chr27:26379883-26379691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
345-540
               

               
Cow position:
               
chr27:23583636-23583447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
74, 21
               

               
Conread position:
               
345-540
               

               
Cow position:
               
chr27:26644637-26644441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
345-540
               

               
Cow position:
               
chr27:30777102-30776910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
345-578
               

               
Cow position:
               
chr27:29816457-29816231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
345-579
               

               
Cow position:
               
chr27:4824419-4824647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
345-579
               

               
Cow position:
               
chr27:4829124-4829348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
345-654
               

               
Cow position:
               
chr27:29493011-29493314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
345-665
               

               
Cow position:
               
chr27:17439172-17438849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
51, 37
               

               
Conread position:
               
345-670
               

               
Cow position:
               
chr27:11470150-11470473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 48
               

               
Conread position:
               
345-671
               

               
Cow position:
               
chr27:344312-343989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
345-679
               

               
Cow position:
               
chr27:27742826-27743170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 0
               

               
Conread position:
               
345-682
               

               
Cow position:
               
chr27:25292722-25292381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
77, 151
               

               
Conread position:
               
345-686
               

               
Cow position:
               
chr27:2682372-2682693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 123
               

               
Conread position:
               
345-688
               

               
Cow position:
               
chr27:525705-525364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
219, 26
               

               
Conread position:
               
345-691
               

               
Cow position:
               
chr27:8262457-8262805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 134
               

               
Conread position:
               
345-693
               

               
Cow position:
               
chr27:16576915-16576569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 204
               

               
Conread position:
               
345-693
               

               
Cow position:
               
chr27:25361262-25361598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
171, 35
               

               
Conread position:
               
345-693
               

               
Cow position:
               
chr27:26849086-26848742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 83
               

               
Conread position:
               
345-748
               

               
Cow position:
               
chr27:30447737-30447332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
47, 99
               

               
Conread position:
               
345-777
               

               
Cow position:
               
chr27:18559316-18558895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
209, 137
               

               
Conread position:
               
345-819
               

               
Cow position:
               
chr27:3256579-3256102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
342, 47
               

               
Conread position:
               
345-819
               

               
Cow position:
               
chr27:9254526-9254039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 62
               

               
Conread position:
               
345-830
               

               
Cow position:
               
chr27:28008514-28009012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 108
               

               
Conread position:
               
345-884
               

               
Cow position:
               
chr27:22330109-22330682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
584
               

               
Alignm identity:
               
421
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 48
               

               
Conread position:
               
345-903
               

               
Cow position:
               
chr27:27867126-27867720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
599
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 230
               

               
Conread position:
               
345-908
               

               
Cow position:
               
chr27:30418213-30417646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
419
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 150
               

               
Conread position:
               
345-932
               

               
Cow position:
               
chr27:16263862-16263285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
603
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
351, 28
               

               
Conread position:
               
345-1002
               

               
Cow position:
               
chr27:28907617-28906938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
689
               

               
Alignm identity:
               
485
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
322, 81
               

               
Conread position:
               
345-1015
               

               
Cow position:
               
chr27:13409617-13410303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
491
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
262, 28
               

               
Conread position:
               
345-1023
               

               
Cow position:
               
chr27:1123565-1122883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
488
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 32
               

               
Conread position:
               
345-1066
               

               
Cow position:
               
chr27:28276802-28276073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
760
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 62
               

               
Conread position:
               
345-1117
               

               
Cow position:
               
chr27:26998862-26999667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
813
               

               
Alignm identity:
               
547
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 314
               

               
Conread position:
               
345-1127
               

               
Cow position:
               
chr27:14669820-14670635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
827
               

               
Alignm identity:
               
584
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 490
               

               
Conread position:
               
345-1137
               

               
Cow position:
               
chr27:15867929-15867129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
821
               

               
Alignm identity:
               
597
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 29
               

               
Conread position:
               
345-1141
               

               
Cow position:
               
chr27:17396901-17397723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
832
               

               
Alignm identity:
               
595
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 172
               

               
Conread position:
               
345-1141
               

               
Cow position:
               
chr27:20828150-20828970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
837
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 412
               

               
Conread position:
               
346-529
               

               
Cow position:
               
chr27:1141314-1141500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
346-643
               

               
Cow position:
               
chr27:15375596-15375887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
346-675
               

               
Cow position:
               
chr27:27557958-27558280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 88
               

               
Conread position:
               
346-691
               

               
Cow position:
               
chr27:6620746-6620406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 56
               

               
Conread position:
               
346-777
               

               
Cow position:
               
chr27:1088787-1088355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
125, 68
               

               
Conread position:
               
346-788
               

               
Cow position:
               
chr27:26785431-26785880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 22
               

               
Conread position:
               
346-933
               

               
Cow position:
               
chr27:8291467-8292059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 9
               

               
Conread position:
               
346-949
               

               
Cow position:
               
chr27:16823354-16822761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
616
               

               
Alignm identity:
               
441
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 27
               

               
Conread position:
               
346-1054
               

               
Cow position:
               
chr27:20757514-20758205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
731
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 80
               

               
Conread position:
               
347-663
               

               
Cow position:
               
chr27:10321678-10322000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
112, 242
               

               
Conread position:
               
347-663
               

               
Cow position:
               
chr27:30697168-30697488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
60, 87
               

               
Conread position:
               
347-671
               

               
Cow position:
               
chr27:22179238-22179555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
347-682
               

               
Cow position:
               
chr27:8429871-8430210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
210, 50
               

               
Conread position:
               
347-690
               

               
Cow position:
               
chr27:30572676-30573026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 46
               

               
Conread position:
               
347-734
               

               
Cow position:
               
chr27:20549139-20549539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 200
               

               
Conread position:
               
347-776
               

               
Cow position:
               
chr27:30783535-30783980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 333
               

               
Conread position:
               
347-782
               

               
Cow position:
               
chr27:12098143-12097698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
316, 143
               

               
Conread position:
               
347-881
               

               
Cow position:
               
chr27:12277726-12278266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
548
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 225
               

               
Conread position:
               
350-527
               

               
Cow position:
               
chr27:19063661-19063486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 30
               

               
Conread position:
               
350-541
               

               
Cow position:
               
chr27:11651719-11651910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
350-560
               

               
Cow position:
               
chr27:16794523-16794733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-682
               

               
Cow position:
               
chr27:20001193-20000858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
312, 0
               

               
Conread position:
               
350-693
               

               
Cow position:
               
chr27:22797036-22796690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 203
               

               
Conread position:
               
350-743
               

               
Cow position:
               
chr27:19963028-19962618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
221, 142
               

               
Conread position:
               
350-779
               

               
Cow position:
               
chr27:523644-524086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-780
               

               
Cow position:
               
chr27:12006771-12007214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-780
               

               
Cow position:
               
chr27:23079709-23080152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:724167-724612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:1481516-1481961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:1521302-1521747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 0
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:3650104-3650550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 0
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:4768943-4769383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 168
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:8743480-8743035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 359
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:12006058-12005613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 203
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:12147515-12147960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 0
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:17403444-17402999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 203
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:29035759-29035314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
314, 0
               

               
Conread position:
               
350-782
               

               
Cow position:
               
chr27:29374283-29373838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 203
               

               
Conread position:
               
350-785
               

               
Cow position:
               
chr27:5853369-5853816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 116
               

               
Conread position:
               
350-785
               

               
Cow position:
               
chr27:16331866-16331442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 42
               

               
Conread position:
               
350-786
               

               
Cow position:
               
chr27:23893957-23894406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 202
               

               
Conread position:
               
350-787
               

               
Cow position:
               
chr27:15643909-15644360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
317, 0
               

               
Conread position:
               
350-895
               

               
Cow position:
               
chr27:13198447-13197898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
560
               

               
Alignm identity:
               
407
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
364, 13
               

               
Conread position:
               
350-1124
               

               
Cow position:
               
chr27:27019562-27020346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
802
               

               
Alignm identity:
               
582
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
344, 30
               

               
Conread position:
               
351-641
               

               
Cow position:
               
chr27:15363894-15364185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 160
               

               
Conread position:
               
351-809
               

               
Cow position:
               
chr27:16260430-16260889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 20
               

               
Conread position:
               
351-819
               

               
Cow position:
               
chr27:23730998-23731470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
159, 60
               

               
Conread position:
               
354-509
               

               
Cow position:
               
chr27:3340299-3340145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
354-573
               

               
Cow position:
               
chr27:29184022-29184240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
354-586
               

               
Cow position:
               
chr27:13353932-13354165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 199
               

               
Conread position:
               
354-598
               

               
Cow position:
               
chr27:8202373-8202131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 34
               

               
Conread position:
               
354-684
               

               
Cow position:
               
chr27:165294-164966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
354-693
               

               
Cow position:
               
chr27:18621344-18621002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
354-693
               

               
Cow position:
               
chr27:29085438-29085755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 146
               

               
Conread position:
               
354-725
               

               
Cow position:
               
chr27:11606259-11605885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
354-777
               

               
Cow position:
               
chr27:15100266-15100702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 0
               

               
Conread position:
               
354-779
               

               
Cow position:
               
chr27:16045357-16045795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 198
               

               
Conread position:
               
354-780
               

               
Cow position:
               
chr27:10590131-10590570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 0
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:1654726-1655167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 198
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:2001471-2001912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 198
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:8187459-8187890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 54
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:8959390-8958949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 0
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:13422537-13422096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:15178757-15178308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:16030771-16030334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 199
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:17476596-17476159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 211
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:29446478-29446039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 198
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:29796863-29797304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 0
               

               
Conread position:
               
354-782
               

               
Cow position:
               
chr27:30306639-30306209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 51
               

               
Conread position:
               
354-830
               

               
Cow position:
               
chr27:1293874-1294365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 422
               

               
Conread position:
               
355-494
               

               
Cow position:
               
chr27:30765843-30765705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
355-555
               

               
Cow position:
               
chr27:27292021-27292220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 0
               

               
Conread position:
               
355-627
               

               
Cow position:
               
chr27:19607105-19607377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
355-759
               

               
Cow position:
               
chr27:10324306-10323915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
132, 25
               

               
Conread position:
               
355-824
               

               
Cow position:
               
chr27:4719358-4719838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
308, 59
               

               
Conread position:
               
355-860
               

               
Cow position:
               
chr27:29309550-29309040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
310, 50
               

               
Conread position:
               
357-689
               

               
Cow position:
               
chr27:23946449-23946777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
207, 181
               

               
Conread position:
               
358-457
               

               
Cow position:
               
chr27:4920094-4920193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
100
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
358-514
               

               
Cow position:
               
chr27:26330558-26330713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
358-516
               

               
Cow position:
               
chr27:27896497-27896656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
358-531
               

               
Cow position:
               
chr27:22499261-22499088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
13, 143
               

               
Conread position:
               
358-557
               

               
Cow position:
               
chr27:2936459-2936665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
358-608
               

               
Cow position:
               
chr27:14910226-14910482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
207, 0
               

               
Conread position:
               
358-624
               

               
Cow position:
               
chr27:17332181-17331920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
231, 10
               

               
Conread position:
               
358-678
               

               
Cow position:
               
chr27:3554903-3554582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
105, 82
               

               
Conread position:
               
358-679
               

               
Cow position:
               
chr27:16337575-16337254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 6
               

               
Conread position:
               
358-680
               

               
Cow position:
               
chr27:22559618-22559295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 210
               

               
Conread position:
               
358-691
               

               
Cow position:
               
chr27:3653069-3652734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 278
               

               
Conread position:
               
358-693
               

               
Cow position:
               
chr27:10085326-10085658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 149
               

               
Conread position:
               
358-761
               

               
Cow position:
               
chr27:13695970-13696390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
206, 20
               

               
Conread position:
               
358-777
               

               
Cow position:
               
chr27:1030923-1030496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
335, 0
               

               
Conread position:
               
358-779
               

               
Cow position:
               
chr27:2627533-2627966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
305, 16
               

               
Conread position:
               
358-782
               

               
Cow position:
               
chr27:10579574-10580006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
306, 233
               

               
Conread position:
               
358-782
               

               
Cow position:
               
chr27:11095178-11094759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
349, 283
               

               
Conread position:
               
358-782
               

               
Cow position:
               
chr27:15312738-15312309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 195
               

               
Conread position:
               
358-782
               

               
Cow position:
               
chr27:19299935-19299498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
187, 195
               

               
Conread position:
               
358-792
               

               
Cow position:
               
chr27:4983071-4983507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
309, 44
               

               
Conread position:
               
358-824
               

               
Cow position:
               
chr27:20065822-20066302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
76, 204
               

               
Conread position:
               
358-974
               

               
Cow position:
               
chr27:21350475-21351121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
475
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 63
               

               
Conread position:
               
358-1015
               

               
Cow position:
               
chr27:5990421-5989742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
684
               

               
Alignm identity:
               
458
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
311, 256
               

               
Conread position:
               
358-1042
               

               
Cow position:
               
chr27:21392970-21393674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
709
               

               
Alignm identity:
               
518
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
331, 80
               

               
Conread position:
               
358-1068
               

               
Cow position:
               
chr27:27049382-27050105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
746
               

               
Alignm identity:
               
497
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 16
               

               
Conread position:
               
359-511
               

               
Cow position:
               
chr27:7023149-7023298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
359-541
               

               
Cow position:
               
chr27:25791627-25791447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
99, 33
               

               
Conread position:
               
359-674
               

               
Cow position:
               
chr27:25990382-25990697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
73, 211
               

               
Conread position:
               
359-693
               

               
Cow position:
               
chr27:19014646-19014989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
359-708
               

               
Cow position:
               
chr27:12173569-12173926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
188, 37
               

               
Conread position:
               
359-761
               

               
Cow position:
               
chr27:9436418-9436840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
86, 23
               

               
Conread position:
               
359-805
               

               
Cow position:
               
chr27:23074490-23074050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
359-824
               

               
Cow position:
               
chr27:21246942-21246464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 22
               

               
Conread position:
               
360-501
               

               
Cow position:
               
chr27:9199161-9199021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
360-579
               

               
Cow position:
               
chr27:4819037-4819248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
360-663
               

               
Cow position:
               
chr27:864853-864542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
69, 32
               

               
Conread position:
               
360-682
               

               
Cow position:
               
chr27:10670667-10670989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
195, 60
               

               
Conread position:
               
360-692
               

               
Cow position:
               
chr27:19146315-19146652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 157
               

               
Conread position:
               
361-680
               

               
Cow position:
               
chr27:13638430-13638747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
361-782
               

               
Cow position:
               
chr27:5861742-5861307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
184, 192
               

               
Conread position:
               
361-1119
               

               
Cow position:
               
chr27:22549254-22550016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
791
               

               
Alignm identity:
               
535
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 19
               

               
Conread position:
               
362-646
               

               
Cow position:
               
chr27:7818834-7818546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
192, 94
               

               
Conread position:
               
362-693
               

               
Cow position:
               
chr27:27819868-27819523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
130, 18
               

               
Conread position:
               
362-766
               

               
Cow position:
               
chr27:25985196-25985612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
62, 57
               

               
Conread position:
               
363-661
               

               
Cow position:
               
chr27:27053862-27053558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 157
               

               
Conread position:
               
364-487
               

               
Cow position:
               
chr27:1522388-1522506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
366-537
               

               
Cow position:
               
chr27:17049807-17049636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 17
               

               
Conread position:
               
366-826
               

               
Cow position:
               
chr27:2900710-2901193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
299, 128
               

               
Conread position:
               
366-1146
               

               
Cow position:
               
chr27:23128984-23128191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
812
               

               
Alignm identity:
               
574
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
301, 220
               

               
Conread position:
               
367-544
               

               
Cow position:
               
chr27:27447816-27447991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
121, 15
               

               
Conread position:
               
368-679
               

               
Cow position:
               
chr27:795349-795030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 130
               

               
Conread position:
               
368-790
               

               
Cow position:
               
chr27:23595788-23595366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
327, 105
               

               
Conread position:
               
370-488
               

               
Cow position:
               
chr27:17925590-17925706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
371-693
               

               
Cow position:
               
chr27:20858762-20859087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
293, 0
               

               
Conread position:
               
371-693
               

               
Cow position:
               
chr27:29234932-29234605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 0
               

               
Conread position:
               
374-470
               

               
Cow position:
               
chr27:13410430-13410527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
98
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
374-513
               

               
Cow position:
               
chr27:21405896-21406031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
374-782
               

               
Cow position:
               
chr27:32439-32860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
290, 0
               

               
Conread position:
               
374-782
               

               
Cow position:
               
chr27:834020-834441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 178
               

               
Conread position:
               
374-782
               

               
Cow position:
               
chr27:18812211-18811790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 179
               

               
Conread position:
               
374-820
               

               
Cow position:
               
chr27:18943541-18944011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
186, 96
               

               
Conread position:
               
374-1054
               

               
Cow position:
               
chr27:6074438-6073751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
703
               

               
Alignm identity:
               
506
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
295, 97
               

               
Conread position:
               
375-538
               

               
Cow position:
               
chr27:15407732-15407890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
90, 120
               

               
Conread position:
               
375-1126
               

               
Cow position:
               
chr27:24445632-24446395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
788
               

               
Alignm identity:
               
550
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 131
               

               
Conread position:
               
378-1112
               

               
Cow position:
               
chr27:28018855-28018084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
782
               

               
Alignm identity:
               
534
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 164
               

               
Conread position:
               
379-677
               

               
Cow position:
               
chr27:16494237-16493933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
103, 14
               

               
Conread position:
               
379-780
               

               
Cow position:
               
chr27:30684428-30684013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
382-665
               

               
Cow position:
               
chr27:21986402-21986133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
14, 141
               

               
Conread position:
               
383-679
               

               
Cow position:
               
chr27:20765435-20765725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
39, 46
               

               
Conread position:
               
384-663
               

               
Cow position:
               
chr27:10274945-10275227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
385-540
               

               
Cow position:
               
chr27:1032845-1032689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
385-773
               

               
Cow position:
               
chr27:26653823-26653418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 18
               

               
Conread position:
               
385-777
               

               
Cow position:
               
chr27:15508914-15509321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
124, 157
               

               
Conread position:
               
385-782
               

               
Cow position:
               
chr27:31566071-31566481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
279, 0
               

               
Conread position:
               
387-818
               

               
Cow position:
               
chr27:11630251-11629812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
163, 88
               

               
Conread position:
               
388-683
               

               
Cow position:
               
chr27:25471664-25471376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
174, 23
               

               
Conread position:
               
391-692
               

               
Cow position:
               
chr27:16407942-16408236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 101
               

               
Conread position:
               
392-655
               

               
Cow position:
               
chr27:25676773-25676509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
165, 181
               

               
Conread position:
               
393-656
               

               
Cow position:
               
chr27:14881380-14881112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
114, 145
               

               
Conread position:
               
393-663
               

               
Cow position:
               
chr27:8727256-8727533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 90
               

               
Conread position:
               
393-682
               

               
Cow position:
               
chr27:26631462-26631181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
267, 18
               

               
Conread position:
               
393-761
               

               
Cow position:
               
chr27:15526872-15526527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
154, 65
               

               
Conread position:
               
393-766
               

               
Cow position:
               
chr27:24115769-24116154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
154, 78
               

               
Conread position:
               
393-1092
               

               
Cow position:
               
chr27:30583249-30582518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
514
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 597
               

               
Conread position:
               
395-657
               

               
Cow position:
               
chr27:24224089-24224344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
165, 36
               

               
Conread position:
               
395-662
               

               
Cow position:
               
chr27:22208731-22208457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
70, 122
               

               
Conread position:
               
395-692
               

               
Cow position:
               
chr27:5967554-5967264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
269, 111
               

               
Conread position:
               
395-782
               

               
Cow position:
               
chr27:5881196-5881595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 157
               

               
Conread position:
               
396-782
               

               
Cow position:
               
chr27:12016842-12016445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
277, 0
               

               
Conread position:
               
397-627
               

               
Cow position:
               
chr27:30877718-30877947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
186, 0
               

               
Conread position:
               
397-819
               

               
Cow position:
               
chr27:28293678-28293235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 25
               

               
Conread position:
               
398-619
               

               
Cow position:
               
chr27:8297009-8296782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
39, 34
               

               
Conread position:
               
398-663
               

               
Cow position:
               
chr27:19578613-19578345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 244
               

               
Conread position:
               
398-689
               

               
Cow position:
               
chr27:9066160-9065868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
152, 96
               

               
Conread position:
               
398-1068
               

               
Cow position:
               
chr27:22418269-22418955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
700
               

               
Alignm identity:
               
505
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
265, 38
               

               
Conread position:
               
400-516
               

               
Cow position:
               
chr27:10867342-10867226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
402-687
               

               
Cow position:
               
chr27:16110788-16111074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
403-507
               

               
Cow position:
               
chr27:12230633-12230737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
403-767
               

               
Cow position:
               
chr27:18954711-18955076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 91
               

               
Conread position:
               
403-785
               

               
Cow position:
               
chr27:11273098-11272707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
135, 91
               

               
Conread position:
               
404-813
               

               
Cow position:
               
chr27:18205822-18205400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
406-777
               

               
Cow position:
               
chr27:6909969-6909619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
70, 36
               

               
Conread position:
               
406-860
               

               
Cow position:
               
chr27:16620478-16620004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 31
               

               
Conread position:
               
409-626
               

               
Cow position:
               
chr27:16581391-16581171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
409-672
               

               
Cow position:
               
chr27:465413-465145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
90, 26
               

               
Conread position:
               
409-779
               

               
Cow position:
               
chr27:1675875-1675477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 339
               

               
Conread position:
               
410-780
               

               
Cow position:
               
chr27:11090699-11091089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
140, 65
               

               
Conread position:
               
411-617
               

               
Cow position:
               
chr27:10980480-10980274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
411-646
               

               
Cow position:
               
chr27:29833642-29833865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 15
               

               
Conread position:
               
411-682
               

               
Cow position:
               
chr27:21578080-21578359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 37
               

               
Conread position:
               
411-744
               

               
Cow position:
               
chr27:25874294-25874628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
140, 48
               

               
Conread position:
               
411-767
               

               
Cow position:
               
chr27:23452957-23452600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 70
               

               
Conread position:
               
411-778
               

               
Cow position:
               
chr27:22107769-22108152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
149, 52
               

               
Conread position:
               
411-782
               

               
Cow position:
               
chr27:19325987-19325603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 142
               

               
Conread position:
               
411-782
               

               
Cow position:
               
chr27:30271638-30271254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 142
               

               
Conread position:
               
411-799
               

               
Cow position:
               
chr27:23511606-23511201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 84
               

               
Conread position:
               
411-809
               

               
Cow position:
               
chr27:24009444-24009865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
139, 27
               

               
Conread position:
               
411-1123
               

               
Cow position:
               
chr27:15927261-15926547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
738
               

               
Alignm identity:
               
507
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 140
               

               
Conread position:
               
412-540
               

               
Cow position:
               
chr27:24342731-24342602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
412-656
               

               
Cow position:
               
chr27:8048200-8048445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
21, 9
               

               
Conread position:
               
412-766
               

               
Cow position:
               
chr27:16241828-16241462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
33, 94
               

               
Conread position:
               
412-782
               

               
Cow position:
               
chr27:9046147-9045763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 141
               

               
Conread position:
               
413-651
               

               
Cow position:
               
chr27:17423305-17423548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
143, 196
               

               
Conread position:
               
414-1126
               

               
Cow position:
               
chr27:31230611-31231334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
742
               

               
Alignm identity:
               
525
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 6
               

               
Conread position:
               
415-594
               

               
Cow position:
               
chr27:5464342-5464163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
130, 137
               

               
Conread position:
               
415-767
               

               
Cow position:
               
chr27:7094908-7094536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 194
               

               
Conread position:
               
415-782
               

               
Cow position:
               
chr27:27630258-27630638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 137
               

               
Conread position:
               
416-663
               

               
Cow position:
               
chr27:28685648-28685397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
140, 78
               

               
Conread position:
               
416-1128
               

               
Cow position:
               
chr27:25809041-25809771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
739
               

               
Alignm identity:
               
527
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
246, 494
               

               
Conread position:
               
417-663
               

               
Cow position:
               
chr27:4869839-4869589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
139, 115
               

               
Conread position:
               
417-679
               

               
Cow position:
               
chr27:263477-263740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
256, 0
               

               
Conread position:
               
418-644
               

               
Cow position:
               
chr27:25719208-25719436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
418-663
               

               
Cow position:
               
chr27:21418514-21418759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 166
               

               
Conread position:
               
419-663
               

               
Cow position:
               
chr27:28036448-28036678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
420-782
               

               
Cow position:
               
chr27:8320218-8320585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
136, 122
               

               
Conread position:
               
420-1044
               

               
Cow position:
               
chr27:4673493-4672842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
656
               

               
Alignm identity:
               
467
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
274, 238
               

               
Conread position:
               
421-693
               

               
Cow position:
               
chr27:15465839-15465572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
421-767
               

               
Cow position:
               
chr27:23502939-23502584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 105
               

               
Conread position:
               
421-779
               

               
Cow position:
               
chr27:28106655-28107026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 83
               

               
Conread position:
               
421-1067
               

               
Cow position:
               
chr27:26959134-26959804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
682
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 212
               

               
Conread position:
               
422-787
               

               
Cow position:
               
chr27:18446117-18446485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 55
               

               
Conread position:
               
423-663
               

               
Cow position:
               
chr27:15667996-15668239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 172
               

               
Conread position:
               
423-994
               

               
Cow position:
               
chr27:23472728-23472139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
602
               

               
Alignm identity:
               
418
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 202
               

               
Conread position:
               
423-1020
               

               
Cow position:
               
chr27:17645720-17646314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
431
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
424-612
               

               
Cow position:
               
chr27:27809762-27809574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
424-928
               

               
Cow position:
               
chr27:25380470-25379937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
389
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 117
               

               
Conread position:
               
428-770
               

               
Cow position:
               
chr27:23481502-23481149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
119, 214
               

               
Conread position:
               
429-766
               

               
Cow position:
               
chr27:7418403-7418762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
429-771
               

               
Cow position:
               
chr27:15632869-15632516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
429-822
               

               
Cow position:
               
chr27:17763888-17763480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
235, 38
               

               
Conread position:
               
429-823
               

               
Cow position:
               
chr27:27737460-27737869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
429-1113
               

               
Cow position:
               
chr27:27460122-27460818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
720
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
211, 65
               

               
Conread position:
               
429-1146
               

               
Cow position:
               
chr27:17473290-17472541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
765
               

               
Alignm identity:
               
538
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
430-640
               

               
Cow position:
               
chr27:6523528-6523313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
430-672
               

               
Cow position:
               
chr27:28163913-28164148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
52, 85
               

               
Conread position:
               
430-675
               

               
Cow position:
               
chr27:23917552-23917792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
431-782
               

               
Cow position:
               
chr27:14297893-14298257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
233, 0
               

               
Conread position:
               
431-899
               

               
Cow position:
               
chr27:27605885-27606351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
232, 10
               

               
Conread position:
               
431-1112
               

               
Cow position:
               
chr27:26984804-26984115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
704
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 120
               

               
Conread position:
               
432-1138
               

               
Cow position:
               
chr27:8061899-8062616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
734
               

               
Alignm identity:
               
498
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 113
               

               
Conread position:
               
433-689
               

               
Cow position:
               
chr27:10992838-10992574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
39, 206
               

               
Conread position:
               
433-826
               

               
Cow position:
               
chr27:9337978-9337570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
261, 248
               

               
Conread position:
               
434-663
               

               
Cow position:
               
chr27:30365664-30365431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
120, 164
               

               
Conread position:
               
434-692
               

               
Cow position:
               
chr27:26239708-26239448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 214
               

               
Conread position:
               
434-777
               

               
Cow position:
               
chr27:11422386-11422721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
229, 68
               

               
Conread position:
               
434-808
               

               
Cow position:
               
chr27:11693273-11693665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
125, 193
               

               
Conread position:
               
435-766
               

               
Cow position:
               
chr27:19626823-19627161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
95, 45
               

               
Conread position:
               
435-819
               

               
Cow position:
               
chr27:26595900-26595501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 321
               

               
Conread position:
               
436-766
               

               
Cow position:
               
chr27:15292602-15292261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
78, 274
               

               
Conread position:
               
437-678
               

               
Cow position:
               
chr27:15201195-15200946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
437-775
               

               
Cow position:
               
chr27:1173083-1173432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
226, 57
               

               
Conread position:
               
437-777
               

               
Cow position:
               
chr27:427575-427234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
255, 114
               

               
Conread position:
               
438-782
               

               
Cow position:
               
chr27:26463426-26463783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 114
               

               
Conread position:
               
439-580
               

               
Cow position:
               
chr27:26796679-26796819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
439-693
               

               
Cow position:
               
chr27:14125300-14125557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 113
               

               
Conread position:
               
439-1134
               

               
Cow position:
               
chr27:26223802-26224517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
737
               

               
Alignm identity:
               
509
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 473
               

               
Conread position:
               
440-666
               

               
Cow position:
               
chr27:5843252-5843473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
440-688
               

               
Cow position:
               
chr27:29612485-29612230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
102, 175
               

               
Conread position:
               
440-828
               

               
Cow position:
               
chr27:26617808-26617418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
62, 117
               

               
Conread position:
               
442-802
               

               
Cow position:
               
chr27:24937860-24938243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
444-703
               

               
Cow position:
               
chr27:29830032-29830300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
61, 152
               

               
Conread position:
               
444-782
               

               
Cow position:
               
chr27:26584758-26584407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 109
               

               
Conread position:
               
444-882
               

               
Cow position:
               
chr27:15319903-15319442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
225, 109
               

               
Conread position:
               
444-1113
               

               
Cow position:
               
chr27:20629482-20628819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
691
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 324
               

               
Conread position:
               
445-761
               

               
Cow position:
               
chr27:28895435-28895751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
212, 71
               

               
Conread position:
               
446-690
               

               
Cow position:
               
chr27:20554404-20554155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
218, 0
               

               
Conread position:
               
446-1084
               

               
Cow position:
               
chr27:1768182-1768833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
665
               

               
Alignm identity:
               
477
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 163
               

               
Conread position:
               
446-1135
               

               
Cow position:
               
chr27:22034935-22035636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
722
               

               
Alignm identity:
               
484
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 56
               

               
Conread position:
               
448-881
               

               
Cow position:
               
chr27:16292844-16292404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 93
               

               
Conread position:
               
449-617
               

               
Cow position:
               
chr27:20264044-20264216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
109, 93
               

               
Conread position:
               
449-671
               

               
Cow position:
               
chr27:6019258-6019481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
214, 49
               

               
Conread position:
               
453-637
               

               
Cow position:
               
chr27:787938-788116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
453-902
               

               
Cow position:
               
chr27:2639565-2640006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
464
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
109, 53
               

               
Conread position:
               
454-793
               

               
Cow position:
               
chr27:22394627-22394265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 63
               

               
Conread position:
               
456-812
               

               
Cow position:
               
chr27:491349-490954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
457-824
               

               
Cow position:
               
chr27:26090960-26091341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
102, 20
               

               
Conread position:
               
458-680
               

               
Cow position:
               
chr27:25277606-25277385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
93, 31
               

               
Conread position:
               
458-884
               

               
Cow position:
               
chr27:30177135-30177587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
206, 81
               

               
Conread position:
               
458-933
               

               
Cow position:
               
chr27:2298853-2298348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 464
               

               
Conread position:
               
458-1122
               

               
Cow position:
               
chr27:15866661-15865981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
695
               

               
Alignm identity:
               
478
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
205, 447
               

               
Conread position:
               
459-663
               

               
Cow position:
               
chr27:26440275-26440484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
94, 23
               

               
Conread position:
               
461-693
               

               
Cow position:
               
chr27:1768847-1769082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 91
               

               
Conread position:
               
461-693
               

               
Cow position:
               
chr27:2569824-2570059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 91
               

               
Conread position:
               
462-1068
               

               
Cow position:
               
chr27:15925771-15925151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
452
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
174, 224
               

               
Conread position:
               
463-647
               

               
Cow position:
               
chr27:2401840-2401651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
97, 85
               

               
Conread position:
               
463-684
               

               
Cow position:
               
chr27:3993337-3993109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
88, 10
               

               
Conread position:
               
463-1110
               

               
Cow position:
               
chr27:23633019-23632372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
677
               

               
Alignm identity:
               
436
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
230, 61
               

               
Conread position:
               
464-647
               

               
Cow position:
               
chr27:11672456-11672270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
93, 21
               

               
Conread position:
               
464-712
               

               
Cow position:
               
chr27:4812415-4812665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
10, 137
               

               
Conread position:
               
464-1116
               

               
Cow position:
               
chr27:22440576-22439894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
690
               

               
Alignm identity:
               
494
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 438
               

               
Conread position:
               
465-663
               

               
Cow position:
               
chr27:2848354-2848150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
466-779
               

               
Cow position:
               
chr27:23793929-23793607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
88, 39
               

               
Conread position:
               
467-793
               

               
Cow position:
               
chr27:13273580-13273913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
468-663
               

               
Cow position:
               
chr27:26551515-26551324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
468-693
               

               
Cow position:
               
chr27:26010212-26009990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
205, 78
               

               
Conread position:
               
468-780
               

               
Cow position:
               
chr27:22654947-22655272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
199, 0
               

               
Conread position:
               
468-782
               

               
Cow position:
               
chr27:165110-164784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
196, 0
               

               
Conread position:
               
469-692
               

               
Cow position:
               
chr27:30606667-30606450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
470-692
               

               
Cow position:
               
chr27:16588249-16588470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
193, 24
               

               
Conread position:
               
470-693
               

               
Cow position:
               
chr27:7277667-7277890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
79, 35
               

               
Conread position:
               
472-622
               

               
Cow position:
               
chr27:26952811-26952963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
474-692
               

               
Cow position:
               
chr27:27002460-27002682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
25, 72
               

               
Conread position:
               
474-831
               

               
Cow position:
               
chr27:16305356-16305727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
193, 291
               

               
Conread position:
               
474-884
               

               
Cow position:
               
chr27:9169248-9169656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
94, 197
               

               
Conread position:
               
475-685
               

               
Cow position:
               
chr27:26219358-26219145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
475-782
               

               
Cow position:
               
chr27:24241372-24241051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 79
               

               
Conread position:
               
476-782
               

               
Cow position:
               
chr27:30361628-30361309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
188, 0
               

               
Conread position:
               
480-1120
               

               
Cow position:
               
chr27:21977719-21978389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
679
               

               
Alignm identity:
               
470
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 422
               

               
Conread position:
               
483-646
               

               
Cow position:
               
chr27:11815225-11815388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
483-881
               

               
Cow position:
               
chr27:30855998-30856391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
162, 60
               

               
Conread position:
               
485-824
               

               
Cow position:
               
chr27:13257752-13258113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
92, 74
               

               
Conread position:
               
486-794
               

               
Cow position:
               
chr27:6454632-6454307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
487-763
               

               
Cow position:
               
chr27:26313790-26314073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 127
               

               
Conread position:
               
491-658
               

               
Cow position:
               
chr27:30814867-30814694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
491-667
               

               
Cow position:
               
chr27:20120879-20120695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
491-682
               

               
Cow position:
               
chr27:6641670-6641473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
47, 176
               

               
Conread position:
               
491-690
               

               
Cow position:
               
chr27:26135665-26135467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
491-830
               

               
Cow position:
               
chr27:14530437-14530800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
491-878
               

               
Cow position:
               
chr27:26807153-26807568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
56, 336
               

               
Conread position:
               
492-1110
               

               
Cow position:
               
chr27:13410954-13411605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
415
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
494-644
               

               
Cow position:
               
chr27:29208315-29208170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
494-787
               

               
Cow position:
               
chr27:2390699-2390392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 69
               

               
Conread position:
               
494-939
               

               
Cow position:
               
chr27:732967-732508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 406
               

               
Conread position:
               
495-779
               

               
Cow position:
               
chr27:20137593-20137890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
498-775
               

               
Cow position:
               
chr27:191113-190825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
498-780
               

               
Cow position:
               
chr27:12501885-12502180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
47, 54
               

               
Conread position:
               
498-819
               

               
Cow position:
               
chr27:16785167-16784815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
52, 131
               

               
Conread position:
               
498-1029
               

               
Cow position:
               
chr27:20640944-20641488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
498-1124
               

               
Cow position:
               
chr27:18558766-18558107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
668
               

               
Alignm identity:
               
453
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 28
               

               
Conread position:
               
499-860
               

               
Cow position:
               
chr27:30702684-30703060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
500-682
               

               
Cow position:
               
chr27:27501932-27502120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 154
               

               
Conread position:
               
500-1026
               

               
Cow position:
               
chr27:8353864-8353327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
551
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
37, 9
               

               
Conread position:
               
501-693
               

               
Cow position:
               
chr27:1906466-1906271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
44, 52
               

               
Conread position:
               
501-1116
               

               
Cow position:
               
chr27:27856739-27856096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
657
               

               
Alignm identity:
               
425
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
96, 59
               

               
Conread position:
               
502-720
               

               
Cow position:
               
chr27:21297297-21297076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
59, 208
               

               
Conread position:
               
502-787
               

               
Cow position:
               
chr27:26015805-26015511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
165, 63
               

               
Conread position:
               
502-792
               

               
Cow position:
               
chr27:28146253-28146556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
46, 51
               

               
Conread position:
               
502-1038
               

               
Cow position:
               
chr27:26412878-26413418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
561
               

               
Alignm identity:
               
401
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 86
               

               
Conread position:
               
502-1104
               

               
Cow position:
               
chr27:20636680-20637289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
629
               

               
Alignm identity:
               
444
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
163, 252
               

               
Conread position:
               
505-662
               

               
Cow position:
               
chr27:22820304-22820147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
505-1000
               

               
Cow position:
               
chr27:30792546-30793059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
141, 55
               

               
Conread position:
               
506-693
               

               
Cow position:
               
chr27:6374910-6374726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
157, 45
               

               
Conread position:
               
506-780
               

               
Cow position:
               
chr27:9334968-9335253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
507-998
               

               
Cow position:
               
chr27:19931544-19931030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 37
               

               
Conread position:
               
508-682
               

               
Cow position:
               
chr27:7648142-7648317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
40, 167
               

               
Conread position:
               
508-777
               

               
Cow position:
               
chr27:22255277-22254995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
510-680
               

               
Cow position:
               
chr27:6058917-6058747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
511-693
               

               
Cow position:
               
chr27:9060122-9059933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
511-809
               

               
Cow position:
               
chr27:26300228-26299906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
511-830
               

               
Cow position:
               
chr27:27521618-27521960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
154, 7
               

               
Conread position:
               
512-945
               

               
Cow position:
               
chr27:27040982-27040531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 56
               

               
Conread position:
               
514-835
               

               
Cow position:
               
chr27:30388833-30389175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
154, 69
               

               
Conread position:
               
514-898
               

               
Cow position:
               
chr27:12231527-12231936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
158, 37
               

               
Conread position:
               
514-933
               

               
Cow position:
               
chr27:27141976-27141544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 61
               

               
Conread position:
               
515-780
               

               
Cow position:
               
chr27:5915292-5915570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
517-752
               

               
Cow position:
               
chr27:27896866-27897112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
517-1078
               

               
Cow position:
               
chr27:10582744-10582163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 334
               

               
Conread position:
               
517-1150
               

               
Cow position:
               
chr27:29831319-29831984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
683
               

               
Alignm identity:
               
483
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
146, 66
               

               
Conread position:
               
518-895
               

               
Cow position:
               
chr27:29515481-29515874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 234
               

               
Conread position:
               
518-896
               

               
Cow position:
               
chr27:30519047-30518659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 118
               

               
Conread position:
               
518-1068
               

               
Cow position:
               
chr27:22426449-22427026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
580
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 384
               

               
Conread position:
               
518-1140
               

               
Cow position:
               
chr27:29799314-29798686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
652
               

               
Alignm identity:
               
429
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 34
               

               
Conread position:
               
520-687
               

               
Cow position:
               
chr27:23148147-23148317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
520-782
               

               
Cow position:
               
chr27:30014698-30014972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
25, 5
               

               
Conread position:
               
520-1015
               

               
Cow position:
               
chr27:7289730-7290243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 373
               

               
Conread position:
               
521-779
               

               
Cow position:
               
chr27:20749664-20749935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
24, 32
               

               
Conread position:
               
522-664
               

               
Cow position:
               
chr27:27469353-27469495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
522-779
               

               
Cow position:
               
chr27:29341168-29341444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
145, 273
               

               
Conread position:
               
523-675
               

               
Cow position:
               
chr27:30374181-30374334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
140, 71
               

               
Conread position:
               
525-689
               

               
Cow position:
               
chr27:22771978-22772146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
137, 77
               

               
Conread position:
               
525-1116
               

               
Cow position:
               
chr27:15454584-15453970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
626
               

               
Alignm identity:
               
438
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 35
               

               
Conread position:
               
526-1050
               

               
Cow position:
               
chr27:27683744-27684288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
557
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 6
               

               
Conread position:
               
527-643
               

               
Cow position:
               
chr27:30765701-30765585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
527-780
               

               
Cow position:
               
chr27:11651450-11651184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 26
               

               
Conread position:
               
527-1116
               

               
Cow position:
               
chr27:22171668-22171059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
622
               

               
Alignm identity:
               
435
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 5
               

               
Conread position:
               
528-773
               

               
Cow position:
               
chr27:264616-264367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
164, 143
               

               
Conread position:
               
528-1015
               

               
Cow position:
               
chr27:20634817-20634321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
135, 12
               

               
Conread position:
               
529-1147
               

               
Cow position:
               
chr27:26433445-26434084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
646
               

               
Alignm identity:
               
420
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 399
               

               
Conread position:
               
532-671
               

               
Cow position:
               
chr27:26644261-26644125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
534-727
               

               
Cow position:
               
chr27:15408057-15408257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
130, 108
               

               
Conread position:
               
534-865
               

               
Cow position:
               
chr27:27449073-27449417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
160, 287
               

               
Conread position:
               
536-773
               

               
Cow position:
               
chr27:2900168-2899926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
136, 31
               

               
Conread position:
               
540-684
               

               
Cow position:
               
chr27:6320453-6320599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
546-782
               

               
Cow position:
               
chr27:31365881-31365632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
546-1042
               

               
Cow position:
               
chr27:12246999-12246487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
521
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
6, 60
               

               
Conread position:
               
546-1127
               

               
Cow position:
               
chr27:31219589-31219019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
606
               

               
Alignm identity:
               
405
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
10, 71
               

               
Conread position:
               
547-680
               

               
Cow position:
               
chr27:707323-707189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
547-1127
               

               
Cow position:
               
chr27:7212370-7212984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
624
               

               
Alignm identity:
               
395
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
22, 162
               

               
Conread position:
               
549-1104
               

               
Cow position:
               
chr27:26427779-26428359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
587
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 354
               

               
Conread position:
               
551-689
               

               
Cow position:
               
chr27:27240051-27240191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
551-692
               

               
Cow position:
               
chr27:26367015-26367159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
551-693
               

               
Cow position:
               
chr27:15643733-15643878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
551-693
               

               
Cow position:
               
chr27:27292506-27292648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
551-780
               

               
Cow position:
               
chr27:26341274-26341516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
551-782
               

               
Cow position:
               
chr27:651610-651854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
551-782
               

               
Cow position:
               
chr27:3340135-3339891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 179
               

               
Conread position:
               
551-782
               

               
Cow position:
               
chr27:11417545-11417789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
551-786
               

               
Cow position:
               
chr27:26330721-26330974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
551-933
               

               
Cow position:
               
chr27:16238243-16237851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 210
               

               
Conread position:
               
551-985
               

               
Cow position:
               
chr27:16182411-16181966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 221
               

               
Conread position:
               
551-1048
               

               
Cow position:
               
chr27:24227446-24227973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
533
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 305
               

               
Conread position:
               
552-690
               

               
Cow position:
               
chr27:12001282-12001423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
553-682
               

               
Cow position:
               
chr27:12240674-12240803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
553-779
               

               
Cow position:
               
chr27:26161850-26161604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
553-785
               

               
Cow position:
               
chr27:11355898-11356125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
553-885
               

               
Cow position:
               
chr27:25791157-25790791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
554-676
               

               
Cow position:
               
chr27:19647317-19647438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
554-748
               

               
Cow position:
               
chr27:17925977-17926178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
554-820
               

               
Cow position:
               
chr27:27187077-27187341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
554-872
               

               
Cow position:
               
chr27:11723558-11723905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
554-915
               

               
Cow position:
               
chr27:4829471-4829844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 55
               

               
Conread position:
               
554-1107
               

               
Cow position:
               
chr27:435586-434998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
598
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
109, 82
               

               
Conread position:
               
554-1112
               

               
Cow position:
               
chr27:8961926-8962480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
578
               

               
Alignm identity:
               
386
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 18
               

               
Conread position:
               
554-1113
               

               
Cow position:
               
chr27:19718263-19717658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
609
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 126
               

               
Conread position:
               
554-1118
               

               
Cow position:
               
chr27:22603506-22602929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
592
               

               
Alignm identity:
               
399
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 234
               

               
Conread position:
               
555-761
               

               
Cow position:
               
chr27:30231935-30232152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
13, 35
               

               
Conread position:
               
555-817
               

               
Cow position:
               
chr27:31371950-31372231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
108, 219
               

               
Conread position:
               
555-851
               

               
Cow position:
               
chr27:18922793-18922479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 268
               

               
Conread position:
               
556-1113
               

               
Cow position:
               
chr27:299041-299614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
589
               

               
Alignm identity:
               
408
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 272
               

               
Conread position:
               
557-794
               

               
Cow position:
               
chr27:20372487-20372734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
136, 55
               

               
Conread position:
               
557-930
               

               
Cow position:
               
chr27:26397929-26398313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
137, 84
               

               
Conread position:
               
558-693
               

               
Cow position:
               
chr27:30198615-30198477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
558-888
               

               
Cow position:
               
chr27:26796319-26795968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
19, 223
               

               
Conread position:
               
559-693
               

               
Cow position:
               
chr27:13878031-13878168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
559-785
               

               
Cow position:
               
chr27:13895525-13895764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
559-929
               

               
Cow position:
               
chr27:23070024-23070413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 264
               

               
Conread position:
               
561-844
               

               
Cow position:
               
chr27:6674572-6674271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
113, 77
               

               
Conread position:
               
561-1014
               

               
Cow position:
               
chr27:11488952-11489417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
134, 69
               

               
Conread position:
               
561-1106
               

               
Cow position:
               
chr27:8629537-8630106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
576
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 262
               

               
Conread position:
               
561-1127
               

               
Cow position:
               
chr27:29184518-29185099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
591
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
159, 71
               

               
Conread position:
               
562-782
               

               
Cow position:
               
chr27:2429899-2430132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
562-782
               

               
Cow position:
               
chr27:3690809-3690576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
562-894
               

               
Cow position:
               
chr27:4819375-4819723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
102, 47
               

               
Conread position:
               
562-1035
               

               
Cow position:
               
chr27:25411179-25411669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 264
               

               
Conread position:
               
562-1054
               

               
Cow position:
               
chr27:4385732-4386241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 46
               

               
Conread position:
               
563-693
               

               
Cow position:
               
chr27:21564991-21564856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
563-1112
               

               
Cow position:
               
chr27:28207127-28206565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
579
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 29
               

               
Conread position:
               
566-1116
               

               
Cow position:
               
chr27:1903396-1902826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
585
               

               
Alignm identity:
               
392
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 302
               

               
Conread position:
               
568-757
               

               
Cow position:
               
chr27:8589173-8589372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
116, 158
               

               
Conread position:
               
568-780
               

               
Cow position:
               
chr27:14129833-14129611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
97, 166
               

               
Conread position:
               
569-835
               

               
Cow position:
               
chr27:4824787-4825069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
101, 252
               

               
Conread position:
               
569-839
               

               
Cow position:
               
chr27:4805581-4805870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
571-720
               

               
Cow position:
               
chr27:31397495-31397344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
92, 138
               

               
Conread position:
               
571-1145
               

               
Cow position:
               
chr27:30868413-30869025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
621
               

               
Alignm identity:
               
434
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 145
               

               
Conread position:
               
572-692
               

               
Cow position:
               
chr27:12411832-12411956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
572-762
               

               
Cow position:
               
chr27:20636175-20635977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
91, 161
               

               
Conread position:
               
577-787
               

               
Cow position:
               
chr27:5882192-5882415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
579-850
               

               
Cow position:
               
chr27:15342813-15343083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 83
               

               
Conread position:
               
581-780
               

               
Cow position:
               
chr27:3231443-3231232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
583-902
               

               
Cow position:
               
chr27:26833488-26833165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
116, 77
               

               
Conread position:
               
584-782
               

               
Cow position:
               
chr27:2590035-2589824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
584-1035
               

               
Cow position:
               
chr27:27038526-27038998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 373
               

               
Conread position:
               
584-1104
               

               
Cow position:
               
chr27:26424277-26424807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
549
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
586-1127
               

               
Cow position:
               
chr27:18544310-18543733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
412
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 441
               

               
Conread position:
               
587-977
               

               
Cow position:
               
chr27:23576228-23576641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
71, 222
               

               
Conread position:
               
588-782
               

               
Cow position:
               
chr27:197606-197399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
588-1029
               

               
Cow position:
               
chr27:24477710-24477262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 121
               

               
Conread position:
               
588-1061
               

               
Cow position:
               
chr27:29208106-29207621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 77
               

               
Conread position:
               
588-1125
               

               
Cow position:
               
chr27:27136225-27136792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
575
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
589-1091
               

               
Cow position:
               
chr27:11535789-11536325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 316
               

               
Conread position:
               
590-782
               

               
Cow position:
               
chr27:221749-221954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
590-782
               

               
Cow position:
               
chr27:28982597-28982802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
590-907
               

               
Cow position:
               
chr27:13860437-13860766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
102, 140
               

               
Conread position:
               
590-1112
               

               
Cow position:
               
chr27:16513574-16514088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
77, 199
               

               
Conread position:
               
590-1116
               

               
Cow position:
               
chr27:28931484-28932045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
409
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
591-841
               

               
Cow position:
               
chr27:8195523-8195255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
596-1111
               

               
Cow position:
               
chr27:20283925-20283406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
540
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
98, 39
               

               
Conread position:
               
597-780
               

               
Cow position:
               
chr27:6899414-6899608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
597-782
               

               
Cow position:
               
chr27:18218845-18218647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
597-782
               

               
Cow position:
               
chr27:27809765-27809963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
597-1015
               

               
Cow position:
               
chr27:23124055-23124485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 135
               

               
Conread position:
               
599-1034
               

               
Cow position:
               
chr27:23882066-23882527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
71, 152
               

               
Conread position:
               
599-1097
               

               
Cow position:
               
chr27:29977554-29977024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 256
               

               
Conread position:
               
600-778
               

               
Cow position:
               
chr27:66930-67121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
600-785
               

               
Cow position:
               
chr27:20092324-20092519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
600-1002
               

               
Cow position:
               
chr27:22399891-22399468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
80, 291
               

               
Conread position:
               
601-806
               

               
Cow position:
               
chr27:9978123-9977900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
601-915
               

               
Cow position:
               
chr27:15858794-15859129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
62, 218
               

               
Conread position:
               
603-940
               

               
Cow position:
               
chr27:30362537-30362180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
603-1112
               

               
Cow position:
               
chr27:28189922-28190430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
60, 221
               

               
Conread position:
               
604-1102
               

               
Cow position:
               
chr27:16960489-16959969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
532
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
58, 13
               

               
Conread position:
               
607-1124
               

               
Cow position:
               
chr27:6541909-6541384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 44
               

               
Conread position:
               
608-1076
               

               
Cow position:
               
chr27:26919623-26920113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
59, 181
               

               
Conread position:
               
610-1029
               

               
Cow position:
               
chr27:26581158-26581591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 165
               

               
Conread position:
               
610-1106
               

               
Cow position:
               
chr27:19589763-19589250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
59, 268
               

               
Conread position:
               
613-1001
               

               
Cow position:
               
chr27:29400102-29399699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
20, 303
               

               
Conread position:
               
613-1122
               

               
Cow position:
               
chr27:7971855-7971313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
550
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
56, 389
               

               
Conread position:
               
615-1128
               

               
Cow position:
               
chr27:13843487-13842948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
48, 217
               

               
Conread position:
               
616-841
               

               
Cow position:
               
chr27:2643657-2643889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
61, 6
               

               
Conread position:
               
616-1015
               

               
Cow position:
               
chr27:14633120-14632704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 123
               

               
Conread position:
               
616-1054
               

               
Cow position:
               
chr27:22723431-22723874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
80, 31
               

               
Conread position:
               
617-1125
               

               
Cow position:
               
chr27:28518558-28518042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 40
               

               
Conread position:
               
618-1109
               

               
Cow position:
               
chr27:26864853-26865344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
97, 11
               

               
Conread position:
               
622-884
               

               
Cow position:
               
chr27:21139101-21138811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 15
               

               
Conread position:
               
626-884
               

               
Cow position:
               
chr27:12429684-12429393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
36, 266
               

               
Conread position:
               
629-1120
               

               
Cow position:
               
chr27:31372711-31373219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 54
               

               
Conread position:
               
630-1056
               

               
Cow position:
               
chr27:23483493-23483044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 195
               

               
Conread position:
               
630-1116
               

               
Cow position:
               
chr27:7412651-7412150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 197
               

               
Conread position:
               
632-1137
               

               
Cow position:
               
chr27:6550717-6550195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
536
               

               
Alignm identity:
               
385
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 165
               

               
Conread position:
               
634-1112
               

               
Cow position:
               
chr27:2957668-2957178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
60, 42
               

               
Conread position:
               
636-1061
               

               
Cow position:
               
chr27:31147410-31147874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 219
               

               
Conread position:
               
636-1138
               

               
Cow position:
               
chr27:7851640-7851124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
31, 201
               

               
Conread position:
               
637-1053
               

               
Cow position:
               
chr27:11273828-11273393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 261
               

               
Conread position:
               
640-1107
               

               
Cow position:
               
chr27:23554072-23554563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 13
               

               
Conread position:
               
640-1127
               

               
Cow position:
               
chr27:28921641-28922149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
379
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 191
               

               
Conread position:
               
641-1105
               

               
Cow position:
               
chr27:11815505-11815979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
55, 215
               

               
Conread position:
               
641-1137
               

               
Cow position:
               
chr27:18507889-18507380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
520
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 151
               

               
Conread position:
               
641-1138
               

               
Cow position:
               
chr27:26508904-26509422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 94
               

               
Conread position:
               
642-785
               

               
Cow position:
               
chr27:22293456-22293612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
645-1141
               

               
Cow position:
               
chr27:12516450-12515925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 261
               

               
Conread position:
               
649-915
               

               
Cow position:
               
chr27:23930213-23929935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 166
               

               
Conread position:
               
656-1126
               

               
Cow position:
               
chr27:7934924-7935408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
36, 136
               

               
Conread position:
               
660-943
               

               
Cow position:
               
chr27:27259842-27259547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
36, 12
               

               
Conread position:
               
660-974
               

               
Cow position:
               
chr27:26379941-26380272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
13, 243
               

               
Conread position:
               
660-1119
               

               
Cow position:
               
chr27:4390020-4390503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
660-1124
               

               
Cow position:
               
chr27:13638758-13639238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
661-1048
               

               
Cow position:
               
chr27:1290634-1291022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
661-1066
               

               
Cow position:
               
chr27:24331960-24331529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 136
               

               
Conread position:
               
661-1070
               

               
Cow position:
               
chr27:30354112-30354542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
39, 15
               

               
Conread position:
               
662-932
               

               
Cow position:
               
chr27:27843759-27844055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
34, 163
               

               
Conread position:
               
662-940
               

               
Cow position:
               
chr27:14902416-14902719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
35, 150
               

               
Conread position:
               
662-1021
               

               
Cow position:
               
chr27:24014508-24014886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 158
               

               
Conread position:
               
662-1036
               

               
Cow position:
               
chr27:11081429-11081039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
33, 66
               

               
Conread position:
               
662-1049
               

               
Cow position:
               
chr27:26643906-26643515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
34, 117
               

               
Conread position:
               
662-1116
               

               
Cow position:
               
chr27:10980097-10979617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 198
               

               
Conread position:
               
662-1137
               

               
Cow position:
               
chr27:22220787-22220282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
32, 233
               

               
Conread position:
               
663-881
               

               
Cow position:
               
chr27:6058733-6058493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
665-850
               

               
Cow position:
               
chr27:2011872-2012078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
7, 62
               

               
Conread position:
               
665-1116
               

               
Cow position:
               
chr27:27388798-27389270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 141
               

               
Conread position:
               
668-1042
               

               
Cow position:
               
chr27:11296478-11296102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
30, 14
               

               
Conread position:
               
670-1023
               

               
Cow position:
               
chr27:24321413-24321041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
22, 153
               

               
Conread position:
               
670-1054
               

               
Cow position:
               
chr27:30989017-30988618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
671-1127
               

               
Cow position:
               
chr27:28001599-28002057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 7
               

               
Conread position:
               
672-1112
               

               
Cow position:
               
chr27:12596980-12596543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
463
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
9, 74
               

               
Conread position:
               
672-1128
               

               
Cow position:
               
chr27:10307072-10307559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 243
               

               
Conread position:
               
674-1125
               

               
Cow position:
               
chr27:2592762-2592284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 93
               

               
Conread position:
               
675-1064
               

               
Cow position:
               
chr27:26218915-26218522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 308
               

               
Conread position:
               
692-1102
               

               
Cow position:
               
chr27:18739584-18739145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
696-869
               

               
Cow position:
               
chr27:22179605-22179788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 128
               

               
Conread position:
               
696-874
               

               
Cow position:
               
chr27:26625317-26625130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 145
               

               
Conread position:
               
696-888
               

               
Cow position:
               
chr27:18215248-18215037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
696-897
               

               
Cow position:
               
chr27:30843886-30844096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
18, 197
               

               
Conread position:
               
696-933
               

               
Cow position:
               
chr27:28038144-28038397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
696-934
               

               
Cow position:
               
chr27:1183684-1183943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
18, 45
               

               
Conread position:
               
696-946
               

               
Cow position:
               
chr27:6523238-6522972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 209
               

               
Conread position:
               
696-982
               

               
Cow position:
               
chr27:27728505-27728217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 204
               

               
Conread position:
               
696-1028
               

               
Cow position:
               
chr27:20553909-20553578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
696-1039
               

               
Cow position:
               
chr27:19647752-19648108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
67, 16
               

               
Conread position:
               
696-1054
               

               
Cow position:
               
chr27:20795976-20795613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 59
               

               
Conread position:
               
696-1054
               

               
Cow position:
               
chr27:30359587-30359227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
696-1068
               

               
Cow position:
               
chr27:30605875-30605507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 163
               

               
Conread position:
               
696-1099
               

               
Cow position:
               
chr27:26239216-26238798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
696-1102
               

               
Cow position:
               
chr27:19685522-19685939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 115
               

               
Conread position:
               
696-1106
               

               
Cow position:
               
chr27:16705439-16705020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 172
               

               
Conread position:
               
696-1110
               

               
Cow position:
               
chr27:19661135-19660690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
696-1122
               

               
Cow position:
               
chr27:27632417-27632842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
20, 120
               

               
Conread position:
               
696-1136
               

               
Cow position:
               
chr27:20552577-20553039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 73
               

               
Conread position:
               
696-1137
               

               
Cow position:
               
chr27:27003089-27003529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
18, 66
               

               
Conread position:
               
696-1164
               

               
Cow position:
               
chr27:20354772-20354308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 113
               

               
Conread position:
               
697-861
               

               
Cow position:
               
chr27:21452878-21453061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 173
               

               
Conread position:
               
697-870
               

               
Cow position:
               
chr27:22771949-22771754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
697-881
               

               
Cow position:
               
chr27:17926445-17926629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 140
               

               
Conread position:
               
697-891
               

               
Cow position:
               
chr27:22498745-22498539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
697-896
               

               
Cow position:
               
chr27:707139-706928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
17, 66
               

               
Conread position:
               
697-945
               

               
Cow position:
               
chr27:21569652-21569911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 191
               

               
Conread position:
               
697-1029
               

               
Cow position:
               
chr27:24738610-24738954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
20, 57
               

               
Conread position:
               
697-1048
               

               
Cow position:
               
chr27:25277328-25276970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 173
               

               
Conread position:
               
697-1065
               

               
Cow position:
               
chr27:19543718-19544116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
17, 221
               

               
Conread position:
               
697-1112
               

               
Cow position:
               
chr27:29493725-29494137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
17, 113
               

               
Conread position:
               
697-1116
               

               
Cow position:
               
chr27:6500256-6499815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 199
               

               
Conread position:
               
697-1116
               

               
Cow position:
               
chr27:15668575-15669017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
17, 132
               

               
Conread position:
               
697-1119
               

               
Cow position:
               
chr27:19497066-19496633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
14, 179
               

               
Conread position:
               
697-1123
               

               
Cow position:
               
chr27:13841566-13841114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
72, 19
               

               
Conread position:
               
697-1124
               

               
Cow position:
               
chr27:18030868-18031321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
72, 15
               

               
Conread position:
               
697-1124
               

               
Cow position:
               
chr27:30915193-30914756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
697-1126
               

               
Cow position:
               
chr27:16478157-16478575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 27
               

               
Conread position:
               
697-1127
               

               
Cow position:
               
chr27:16284664-16284234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
17, 129
               

               
Conread position:
               
697-1148
               

               
Cow position:
               
chr27:20869509-20869958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
698-860
               

               
Cow position:
               
chr27:28164221-28164390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 39
               

               
Conread position:
               
698-897
               

               
Cow position:
               
chr27:20592174-20591957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
698-1054
               

               
Cow position:
               
chr27:22454590-22454956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
698-1060
               

               
Cow position:
               
chr27:20036938-20037303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
698-1129
               

               
Cow position:
               
chr27:30765222-30764776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 306
               

               
Conread position:
               
698-1137
               

               
Cow position:
               
chr27:26163568-26163141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
21, 31
               

               
Conread position:
               
699-931
               

               
Cow position:
               
chr27:30670927-30670684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
699-1002
               

               
Cow position:
               
chr27:30551185-30550862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 123
               

               
Conread position:
               
699-1022
               

               
Cow position:
               
chr27:18593460-18593125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
15, 119
               

               
Conread position:
               
699-1102
               

               
Cow position:
               
chr27:29085925-29086345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
699-1116
               

               
Cow position:
               
chr27:23917865-23918277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
15, 36
               

               
Conread position:
               
700-862
               

               
Cow position:
               
chr27:10275507-10275672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
700-881
               

               
Cow position:
               
chr27:31499256-31499055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
700-1116
               

               
Cow position:
               
chr27:22547216-22547631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
14, 118
               

               
Conread position:
               
700-1116
               

               
Cow position:
               
chr27:30814593-30814174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 105
               

               
Conread position:
               
702-1028
               

               
Cow position:
               
chr27:10992540-10992203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
12, 149
               

               
Conread position:
               
703-1033
               

               
Cow position:
               
chr27:13252195-13251857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
11, 109
               

               
Conread position:
               
706-881
               

               
Cow position:
               
chr27:27550565-27550750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
8, 106
               

               
Conread position:
               
708-888
               

               
Cow position:
               
chr27:18434292-18434485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 13
               

               
Conread position:
               
716-1106
               

               
Cow position:
               
chr27:15408872-15409258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
52, 97
               

               
Conread position:
               
716-1149
               

               
Cow position:
               
chr27:25427737-25428183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
67, 38
               

               
Conread position:
               
719-933
               

               
Cow position:
               
chr27:22268673-22268443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 98
               

               
Conread position:
               
720-1054
               

               
Cow position:
               
chr27:15643343-15642995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
45, 181
               

               
Conread position:
               
720-1128
               

               
Cow position:
               
chr27:20748858-20749258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
72, 40
               

               
Conread position:
               
724-1127
               

               
Cow position:
               
chr27:27438341-27438762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
42, 179
               

               
Conread position:
               
724-1162
               

               
Cow position:
               
chr27:4944365-4944800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 60
               

               
Conread position:
               
725-1124
               

               
Cow position:
               
chr27:30871897-30872308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 136
               

               
Conread position:
               
725-1127
               

               
Cow position:
               
chr27:20046040-20045642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 157
               

               
Conread position:
               
726-1135
               

               
Cow position:
               
chr27:19668627-19669068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
43, 284
               

               
Conread position:
               
727-1053
               

               
Cow position:
               
chr27:27270377-27270720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
13, 151
               

               
Conread position:
               
728-1116
               

               
Cow position:
               
chr27:16781024-16780617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
728-1119
               

               
Cow position:
               
chr27:11480470-11480884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
41, 349
               

               
Conread position:
               
728-1137
               

               
Cow position:
               
chr27:8168277-8168683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
732-1100
               

               
Cow position:
               
chr27:23891093-23890706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 168
               

               
Conread position:
               
733-1104
               

               
Cow position:
               
chr27:22735447-22735825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
739-1062
               

               
Cow position:
               
chr27:28270998-28271338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 173
               

               
Conread position:
               
740-1054
               

               
Cow position:
               
chr27:28467291-28467628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 179
               

               
Conread position:
               
740-1126
               

               
Cow position:
               
chr27:23545181-23545584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 139
               

               
Conread position:
               
744-1156
               

               
Cow position:
               
chr27:26481074-26481484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 19
               

               
Conread position:
               
745-1125
               

               
Cow position:
               
chr27:16275536-16275934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
40, 54
               

               
Conread position:
               
765-1141
               

               
Cow position:
               
chr27:7649470-7649862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
765-1158
               

               
Cow position:
               
chr27:427087-426687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
768-1068
               

               
Cow position:
               
chr27:30260780-30261086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
774-1154
               

               
Cow position:
               
chr27:29380967-29380578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
16, 35
               

               
Conread position:
               
779-1018
               

               
Cow position:
               
chr27:715602-715357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
58, 96
               

               
Conread position:
               
779-1116
               

               
Cow position:
               
chr27:11151775-11151429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
31, 221
               

               
Conread position:
               
779-1127
               

               
Cow position:
               
chr27:26226191-26226544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
782-1105
               

               
Cow position:
               
chr27:22559725-22560058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
30, 164
               

               
Conread position:
               
782-1128
               

               
Cow position:
               
chr27:23594412-23594066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
81, 33
               

               
Conread position:
               
783-1026
               

               
Cow position:
               
chr27:20092743-20092986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 22
               

               
Conread position:
               
784-1116
               

               
Cow position:
               
chr27:23511084-23510732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
784-1123
               

               
Cow position:
               
chr27:20078961-20078615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
784-1123
               

               
Cow position:
               
chr27:28896969-28896628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
785-1103
               

               
Cow position:
               
chr27:26188915-26188597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
77, 52
               

               
Conread position:
               
790-1119
               

               
Cow position:
               
chr27:7615000-7615315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 106
               

               
Conread position:
               
790-1135
               

               
Cow position:
               
chr27:19500146-19500498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
47, 98
               

               
Conread position:
               
791-1102
               

               
Cow position:
               
chr27:27694684-27695004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 12
               

               
Conread position:
               
804-1135
               

               
Cow position:
               
chr27:6925164-6924822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
33, 140
               

               
Conread position:
               
806-1125
               

               
Cow position:
               
chr27:16965645-16965323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
31, 8
               

               
Conread position:
               
809-1126
               

               
Cow position:
               
chr27:29593563-29593879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
53, 16
               

               
Conread position:
               
812-1118
               

               
Cow position:
               
chr27:23452526-23452218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
812-1137
               

               
Cow position:
               
chr27:27405002-27405333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
26, 77
               

               
Conread position:
               
813-1067
               

               
Cow position:
               
chr27:7974240-7973984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
24, 81
               

               
Conread position:
               
813-1128
               

               
Cow position:
               
chr27:26111843-26112171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
23, 317
               

               
Conread position:
               
813-1141
               

               
Cow position:
               
chr27:20514887-20514559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
24, 129
               

               
Conread position:
               
814-1115
               

               
Cow position:
               
chr27:22489343-22489031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
817-1125
               

               
Cow position:
               
chr27:23559969-23560281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
16, 65
               

               
Conread position:
               
820-1123
               

               
Cow position:
               
chr27:1190416-1190729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 69
               

               
Conread position:
               
830-1116
               

               
Cow position:
               
chr27:23507696-23507407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
29, 59
               

               
Conread position:
               
839-1111
               

               
Cow position:
               
chr27:15865648-15865372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
19, 221
               

               
Conread position:
               
839-1123
               

               
Cow position:
               
chr27:13940522-13940800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
96, 38
               

               
Conread position:
               
839-1123
               

               
Cow position:
               
chr27:26852555-26852832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
23, 46
               

               
Conread position:
               
839-1128
               

               
Cow position:
               
chr27:23860205-23859904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
23, 106
               

               
Conread position:
               
839-1141
               

               
Cow position:
               
chr27:29613451-29613757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
20, 41
               

               
Conread position:
               
845-1135
               

               
Cow position:
               
chr27:6290503-6290213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
857-1104
               

               
Cow position:
               
chr27:11993847-11994098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 19
               

               
Conread position:
               
859-1051
               

               
Cow position:
               
chr27:20337115-20336925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
859-1112
               

               
Cow position:
               
chr27:212978-212712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
859-1119
               

               
Cow position:
               
chr27:19509029-19508766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
859-1124
               

               
Cow position:
               
chr27:2885818-2886089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
76, 18
               

               
Conread position:
               
859-1127
               

               
Cow position:
               
chr27:5553485-5553217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
8, 35
               

               
Conread position:
               
859-1130
               

               
Cow position:
               
chr27:12425303-12425031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
77, 32
               

               
Conread position:
               
859-1136
               

               
Cow position:
               
chr27:19933079-19932804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 28
               

               
Conread position:
               
860-1124
               

               
Cow position:
               
chr27:12658333-12658604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
860-1124
               

               
Cow position:
               
chr27:26437105-26437371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
41, 169
               

               
Conread position:
               
860-1126
               

               
Cow position:
               
chr27:11982635-11982901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
86, 30
               

               
Conread position:
               
861-1126
               

               
Cow position:
               
chr27:12459297-12459037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 22
               

               
Conread position:
               
862-1127
               

               
Cow position:
               
chr27:31210559-31210295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
75, 22
               

               
Conread position:
               
866-1137
               

               
Cow position:
               
chr27:17933936-17933657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
869-1120
               

               
Cow position:
               
chr27:23994414-23994662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
172, 61
               

               
Conread position:
               
870-1110
               

               
Cow position:
               
chr27:27058403-27058642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 7
               

               
Conread position:
               
882-1128
               

               
Cow position:
               
chr27:30455989-30455738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
30, 179
               

               
Conread position:
               
890-1138
               

               
Cow position:
               
chr27:26245563-26245809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
895-1135
               

               
Cow position:
               
chr27:10323817-10323582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
40, 63
               

               
Conread position:
               
896-1116
               

               
Cow position:
               
chr27:24693392-24693175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
902-1124
               

               
Cow position:
               
chr27:26121733-26121507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
33, 141
               

               
Conread position:
               
905-1119
               

               
Cow position:
               
chr27:26793812-26794030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
5, 112
               

               
Conread position:
               
905-1127
               

               
Cow position:
               
chr27:20612491-20612267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
105, 27
               

               
Conread position:
               
908-1128
               

               
Cow position:
               
chr27:6330611-6330379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
909-1116
               

               
Cow position:
               
chr27:20719254-20719042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
909-1137
               

               
Cow position:
               
chr27:24007434-24007201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
909-1138
               

               
Cow position:
               
chr27:7304638-7304870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
26, 97
               

               
Conread position:
               
909-1144
               

               
Cow position:
               
chr27:20653289-20653528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
26, 214
               

               
Conread position:
               
911-1125
               

               
Cow position:
               
chr27:29693442-29693217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
24, 210
               

               
Conread position:
               
911-1137
               

               
Cow position:
               
chr27:29991483-29991724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
912-1127
               

               
Cow position:
               
chr27:10404153-10404371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
23, 35
               

               
Conread position:
               
912-1135
               

               
Cow position:
               
chr27:27740328-27740554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
23, 75
               

               
Conread position:
               
918-1068
               

               
Cow position:
               
chr27:27747508-27747659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
918-1128
               

               
Cow position:
               
chr27:11323287-11323071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
918-1137
               

               
Cow position:
               
chr27:18791552-18791777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 204
               

               
Conread position:
               
921-1113
               

               
Cow position:
               
chr27:19576369-19576563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
16, 115
               

               
Conread position:
               
921-1128
               

               
Cow position:
               
chr27:18688455-18688666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
14, 192
               

               
Conread position:
               
922-1116
               

               
Cow position:
               
chr27:26118453-26118254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
922-1124
               

               
Cow position:
               
chr27:13801762-13801554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
130, 14
               

               
Conread position:
               
923-1104
               

               
Cow position:
               
chr27:232506-232320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
924-1127
               

               
Cow position:
               
chr27:27827900-27828110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
934-1068
               

               
Cow position:
               
chr27:24709497-24709363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
934-1104
               

               
Cow position:
               
chr27:26909651-26909819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 19
               

               
Conread position:
               
934-1113
               

               
Cow position:
               
chr27:20325084-20324899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
934-1116
               

               
Cow position:
               
chr27:11208614-11208800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
934-1135
               

               
Cow position:
               
chr27:24303887-24303681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
114, 140
               

               
Conread position:
               
936-1123
               

               
Cow position:
               
chr27:20048572-20048386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
134, 101
               

               
Conread position:
               
936-1127
               

               
Cow position:
               
chr27:20266287-20266480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
132, 151
               

               
Conread position:
               
956-1120
               

               
Cow position:
               
chr27:9956513-9956681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
956-1127
               

               
Cow position:
               
chr27:19805778-19805950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
83, 33
               

               
Conread position:
               
957-1137
               

               
Cow position:
               
chr27:672584-672400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 29
               

               
Conread position:
               
959-1098
               

               
Cow position:
               
chr27:23060198-23060341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
959-1112
               

               
Cow position:
               
chr27:21951063-21951219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
111, 72
               

               
Conread position:
               
959-1116
               

               
Cow position:
               
chr27:178778-178620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
111, 72
               

               
Conread position:
               
959-1116
               

               
Cow position:
               
chr27:23148081-23147921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
959-1137
               

               
Cow position:
               
chr27:28015817-28015999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
68, 76
               

               
Conread position:
               
959-1142
               

               
Cow position:
               
chr27:23232831-23232647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
51, 160
               

               
Conread position:
               
959-1151
               

               
Cow position:
               
chr27:21202108-21201914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 166
               

               
Conread position:
               
959-1153
               

               
Cow position:
               
chr27:19779792-19779597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
111, 90
               

               
Conread position:
               
960-1122
               

               
Cow position:
               
chr27:31157726-31157562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
110, 56
               

               
Conread position:
               
960-1123
               

               
Cow position:
               
chr27:26317980-26317817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
110, 132
               

               
Conread position:
               
960-1126
               

               
Cow position:
               
chr27:31498697-31498527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
69, 54
               

               
Conread position:
               
961-1101
               

               
Cow position:
               
chr27:26625122-26624979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
961-1113
               

               
Cow position:
               
chr27:29249505-29249346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
961-1116
               

               
Cow position:
               
chr27:22583660-22583500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
961-1122
               

               
Cow position:
               
chr27:19074109-19074272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 36
               

               
Conread position:
               
961-1137
               

               
Cow position:
               
chr27:29308260-29308079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 60
               

               
Conread position:
               
961-1148
               

               
Cow position:
               
chr27:9504469-9504278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
961-1148
               

               
Cow position:
               
chr27:23760068-23760254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
109, 80
               

               
Conread position:
               
962-1126
               

               
Cow position:
               
chr27:20081216-20081383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 59
               

               
Conread position:
               
962-1127
               

               
Cow position:
               
chr27:27449973-27450136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
108, 79
               

               
Conread position:
               
964-1141
               

               
Cow position:
               
chr27:29877563-29877745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
966-1134
               

               
Cow position:
               
chr27:21101382-21101553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
104, 61
               

               
Conread position:
               
967-1104
               

               
Cow position:
               
chr27:30996921-30997060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
103, 53
               

               
Conread position:
               
969-1129
               

               
Cow position:
               
chr27:21054365-21054198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
971-1138
               

               
Cow position:
               
chr27:27012602-27012426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
976-1127
               

               
Cow position:
               
chr27:20825892-20826051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
977-1127
               

               
Cow position:
               
chr27:22614758-22614600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
979-1137
               

               
Cow position:
               
chr27:26467663-26467825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
91, 0
               
Show alignments to all cow chromosomes.