Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8049N19.3 | 
| Conread position: | 120-777 | 
| Cow position: | chr6:10681959-10682635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 337, 0 | 
| Conread position: | 276-808 | 
| Cow position: | chr6:2074018-2074571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 304-520 | 
| Cow position: | chr6:65847824-65847604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 8, 189 | 
| Conread position: | 304-534 | 
| Cow position: | chr6:54429236-54429450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 8, 60 | 
| Conread position: | 304-694 | 
| Cow position: | chr6:479095-479491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 304-780 | 
| Cow position: | chr6:20451507-20451994 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 124 | 
| Conread position: | 304-780 | 
| Cow position: | chr6:24242835-24243320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 119 | 
| Conread position: | 305-780 | 
| Cow position: | chr6:40358328-40357836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 305-792 | 
| Cow position: | chr6:47039661-47039181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 265 | 
| Conread position: | 305-792 | 
| Cow position: | chr6:51877305-51877811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 52 | 
| Conread position: | 305-841 | 
| Cow position: | chr6:42267267-42267820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 554 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 306-518 | 
| Cow position: | chr6:11721662-11721450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 311-437 | 
| Cow position: | chr6:6100594-6100466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 311-777 | 
| Cow position: | chr6:40300454-40299971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 79, 26 | 
| Conread position: | 313-443 | 
| Cow position: | chr6:40861449-40861577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 313-642 | 
| Cow position: | chr6:11188020-11188352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 137, 60 | 
| Conread position: | 319-692 | 
| Cow position: | chr6:89680-89312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 103, 12 | 
| Conread position: | 320-743 | 
| Cow position: | chr6:33949598-33949144 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 131 | 
| Conread position: | 321-579 | 
| Cow position: | chr6:39916388-39916652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 23, 155 | 
| Conread position: | 321-663 | 
| Cow position: | chr6:53380687-53381030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 226, 150 | 
| Conread position: | 322-884 | 
| Cow position: | chr6:16675235-16675808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 586 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 8, 354 | 
| Conread position: | 324-538 | 
| Cow position: | chr6:1498732-1498946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 324-613 | 
| Cow position: | chr6:63032497-63032772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 324-712 | 
| Cow position: | chr6:41868402-41868000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 42, 31 | 
| Conread position: | 325-782 | 
| Cow position: | chr6:2898334-2898805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 228 | 
| Conread position: | 326-470 | 
| Cow position: | chr6:14415832-14415976 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 327-459 | 
| Cow position: | chr6:54427065-54426932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 28, 8 | 
| Conread position: | 328-777 | 
| Cow position: | chr6:3445238-3444787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 342, 179 | 
| Conread position: | 329-488 | 
| Cow position: | chr6:57283703-57283545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 329-662 | 
| Cow position: | chr6:50685395-50685061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 200, 49 | 
| Conread position: | 329-680 | 
| Cow position: | chr6:67950358-67950708 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 344, 186 | 
| Conread position: | 329-683 | 
| Cow position: | chr6:65866853-65866494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 241 | 
| Conread position: | 329-748 | 
| Cow position: | chr6:64888530-64888946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 239, 105 | 
| Conread position: | 329-780 | 
| Cow position: | chr6:16593525-16593968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 379, 104 | 
| Conread position: | 329-780 | 
| Cow position: | chr6:40975742-40976204 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 340, 124 | 
| Conread position: | 329-792 | 
| Cow position: | chr6:54218098-54218575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 49 | 
| Conread position: | 329-885 | 
| Cow position: | chr6:10695291-10695875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 594 | 
| Alignm identity: | 443 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 326, 79 | 
| Conread position: | 330-540 | 
| Cow position: | chr6:3113494-3113276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 7, 208 | 
| Conread position: | 330-785 | 
| Cow position: | chr6:66234917-66235372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 337, 164 | 
| Conread position: | 331-515 | 
| Cow position: | chr6:33301248-33301431 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 331-526 | 
| Cow position: | chr6:6061360-6061162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 58, 129 | 
| Conread position: | 331-613 | 
| Cow position: | chr6:30470790-30470509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 204, 50 | 
| Conread position: | 331-832 | 
| Cow position: | chr6:28343081-28343597 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 336, 50 | 
| Conread position: | 332-515 | 
| Cow position: | chr6:8538514-8538696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 23, 48 | 
| Conread position: | 332-787 | 
| Cow position: | chr6:36531855-36532323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 238, 230 | 
| Conread position: | 333-468 | 
| Cow position: | chr6:8535218-8535083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 333-471 | 
| Cow position: | chr6:34843110-34842965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 333-477 | 
| Cow position: | chr6:6944396-6944253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 145 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 41, 0 | 
| Conread position: | 333-488 | 
| Cow position: | chr6:7112133-7111979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 156 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 333-506 | 
| Cow position: | chr6:4274626-4274794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 333-514 | 
| Cow position: | chr6:44494787-44494968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 74, 83 | 
| Conread position: | 333-515 | 
| Cow position: | chr6:58036864-58037042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 333-517 | 
| Cow position: | chr6:41410182-41410366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 333-519 | 
| Cow position: | chr6:40861774-40861592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 333-521 | 
| Cow position: | chr6:14199624-14199811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 139, 41 | 
| Conread position: | 333-523 | 
| Cow position: | chr6:14851177-14850990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 333-523 | 
| Cow position: | chr6:16220605-16220416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 185, 0 | 
| Conread position: | 333-524 | 
| Cow position: | chr6:5946194-5946003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 333-527 | 
| Cow position: | chr6:40319841-40320035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 50, 79 | 
| Conread position: | 333-528 | 
| Cow position: | chr6:24109126-24109321 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 333-539 | 
| Cow position: | chr6:40137824-40137618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 333-540 | 
| Cow position: | chr6:37488075-37487878 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 48, 141 | 
| Conread position: | 333-540 | 
| Cow position: | chr6:56858840-56859033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 333-541 | 
| Cow position: | chr6:1263740-1263947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 161, 0 | 
| Conread position: | 333-558 | 
| Cow position: | chr6:1104580-1104364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 149, 0 | 
| Conread position: | 333-570 | 
| Cow position: | chr6:22332914-22332678 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 0 | 
| Conread position: | 333-575 | 
| Cow position: | chr6:28482246-28482489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 177 | 
| Conread position: | 333-585 | 
| Cow position: | chr6:6200910-6201161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 206, 0 | 
| Conread position: | 333-590 | 
| Cow position: | chr6:34503943-34503687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 333-603 | 
| Cow position: | chr6:8432471-8432740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 156 | 
| Conread position: | 333-607 | 
| Cow position: | chr6:45160953-45160680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 0 | 
| Conread position: | 333-618 | 
| Cow position: | chr6:6614882-6615167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 56 | 
| Conread position: | 333-618 | 
| Cow position: | chr6:51393235-51393521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 232, 41 | 
| Conread position: | 333-620 | 
| Cow position: | chr6:28164105-28164397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 227, 65 | 
| Conread position: | 333-638 | 
| Cow position: | chr6:2582195-2582502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 46 | 
| Conread position: | 333-639 | 
| Cow position: | chr6:223918-223626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 224, 0 | 
| Conread position: | 333-644 | 
| Cow position: | chr6:13405916-13406231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 165, 37 | 
| Conread position: | 333-654 | 
| Cow position: | chr6:45793237-45793560 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 227, 60 | 
| Conread position: | 333-655 | 
| Cow position: | chr6:28080504-28080187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 226, 81 | 
| Conread position: | 333-661 | 
| Cow position: | chr6:29239139-29239467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 86, 196 | 
| Conread position: | 333-661 | 
| Cow position: | chr6:62486916-62486587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 52 | 
| Conread position: | 333-663 | 
| Cow position: | chr6:7175691-7175357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 46, 51 | 
| Conread position: | 333-663 | 
| Cow position: | chr6:28101104-28100755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 60 | 
| Conread position: | 333-663 | 
| Cow position: | chr6:32420521-32420850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 333-663 | 
| Cow position: | chr6:34476175-34475847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 0 | 
| Conread position: | 333-663 | 
| Cow position: | chr6:41466711-41466386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 212 | 
| Conread position: | 333-663 | 
| Cow position: | chr6:50983613-50983944 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 333-671 | 
| Cow position: | chr6:52401223-52401562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 223, 138 | 
| Conread position: | 333-672 | 
| Cow position: | chr6:3118808-3118465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 96 | 
| Conread position: | 333-680 | 
| Cow position: | chr6:1096155-1095797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 74 | 
| Conread position: | 333-680 | 
| Cow position: | chr6:3375165-3374812 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 186 | 
| Conread position: | 333-680 | 
| Cow position: | chr6:29084809-29084464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 215, 48 | 
| Conread position: | 333-682 | 
| Cow position: | chr6:12100001-12100370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 115, 268 | 
| Conread position: | 333-682 | 
| Cow position: | chr6:41413611-41413279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 248, 50 | 
| Conread position: | 333-682 | 
| Cow position: | chr6:42617060-42617407 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 29 | 
| Conread position: | 333-682 | 
| Cow position: | chr6:51191208-51191570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 154, 117 | 
| Conread position: | 333-689 | 
| Cow position: | chr6:25774043-25773688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 336, 171 | 
| Conread position: | 333-689 | 
| Cow position: | chr6:40497007-40497363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 50 | 
| Conread position: | 333-691 | 
| Cow position: | chr6:39330952-39330590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 0 | 
| Conread position: | 333-692 | 
| Cow position: | chr6:1834576-1834934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 338, 88 | 
| Conread position: | 333-692 | 
| Cow position: | chr6:3484839-3484463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 0 | 
| Conread position: | 333-693 | 
| Cow position: | chr6:15471233-15470871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 51, 149 | 
| Conread position: | 333-693 | 
| Cow position: | chr6:63094239-63094601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 332, 10 | 
| Conread position: | 333-766 | 
| Cow position: | chr6:61066509-61066961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 333-771 | 
| Cow position: | chr6:17111585-17111138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 339, 320 | 
| Conread position: | 333-771 | 
| Cow position: | chr6:17121970-17122417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 339, 320 | 
| Conread position: | 333-771 | 
| Cow position: | chr6:60876876-60877325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 0 | 
| Conread position: | 333-777 | 
| Cow position: | chr6:1817433-1816978 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 338, 102 | 
| Conread position: | 333-777 | 
| Cow position: | chr6:24125825-24125397 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 120 | 
| Conread position: | 333-777 | 
| Cow position: | chr6:57303171-57303626 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 237, 46 | 
| Conread position: | 333-778 | 
| Cow position: | chr6:64426620-64427077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 48 | 
| Conread position: | 333-780 | 
| Cow position: | chr6:38872947-38872489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 251 | 
| Conread position: | 333-780 | 
| Cow position: | chr6:51718137-51718596 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 52 | 
| Conread position: | 333-780 | 
| Cow position: | chr6:55538693-55538236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 46 | 
| Conread position: | 333-782 | 
| Cow position: | chr6:76860-76399 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 331, 161 | 
| Conread position: | 333-782 | 
| Cow position: | chr6:42481462-42481921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 219 | 
| Conread position: | 333-785 | 
| Cow position: | chr6:46584713-46585181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 55, 466 | 
| Conread position: | 333-785 | 
| Cow position: | chr6:51733662-51734128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 0 | 
| Conread position: | 333-787 | 
| Cow position: | chr6:47976-47512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 101 | 
| Conread position: | 333-787 | 
| Cow position: | chr6:27526424-27525957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 283 | 
| Conread position: | 333-787 | 
| Cow position: | chr6:37643998-37644465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 189 | 
| Conread position: | 333-787 | 
| Cow position: | chr6:55903670-55904132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 336, 201 | 
| Conread position: | 333-794 | 
| Cow position: | chr6:33921820-33921347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 64 | 
| Conread position: | 333-794 | 
| Cow position: | chr6:44017247-44016768 (view UCSC Genome Browser custom track) | 
| Alignm length: | 483 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 184 | 
| Conread position: | 333-803 | 
| Cow position: | chr6:38988243-38987754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 59 | 
| Conread position: | 333-809 | 
| Cow position: | chr6:52001807-52002295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 329, 81 | 
| Conread position: | 333-813 | 
| Cow position: | chr6:56501744-56502236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 495 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 338, 155 | 
| Conread position: | 333-819 | 
| Cow position: | chr6:12387894-12387388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 217 | 
| Conread position: | 333-819 | 
| Cow position: | chr6:31688955-31688449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 232, 427 | 
| Conread position: | 333-819 | 
| Cow position: | chr6:44510677-44511181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 330, 41 | 
| Conread position: | 333-822 | 
| Cow position: | chr6:45617998-45617498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 520 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 81 | 
| Conread position: | 333-823 | 
| Cow position: | chr6:25783737-25784252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 93 | 
| Conread position: | 333-824 | 
| Cow position: | chr6:208584-209069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 91 | 
| Conread position: | 333-824 | 
| Cow position: | chr6:29077161-29077670 (view UCSC Genome Browser custom track) | 
| Alignm length: | 516 | 
| Alignm identity: | 377 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 223, 61 | 
| Conread position: | 333-830 | 
| Cow position: | chr6:15137592-15137072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 526 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 262, 203 | 
| Conread position: | 333-830 | 
| Cow position: | chr6:65909906-65910421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 428 | 
| Conread position: | 333-854 | 
| Cow position: | chr6:46666538-46667086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 329, 267 | 
| Conread position: | 333-860 | 
| Cow position: | chr6:50120352-50119806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 550 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 84 | 
| Conread position: | 333-872 | 
| Cow position: | chr6:11638304-11637759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 553 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 361, 59 | 
| Conread position: | 333-873 | 
| Cow position: | chr6:65862118-65862684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 336, 47 | 
| Conread position: | 333-881 | 
| Cow position: | chr6:28156692-28156145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 358 | 
| Conread position: | 333-888 | 
| Cow position: | chr6:21312325-21311740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 178 | 
| Conread position: | 333-909 | 
| Cow position: | chr6:60931472-60930864 (view UCSC Genome Browser custom track) | 
| Alignm length: | 617 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 200 | 
| Conread position: | 333-932 | 
| Cow position: | chr6:16737454-16738072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 69 | 
| Conread position: | 333-942 | 
| Cow position: | chr6:16410635-16411255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 632 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 330, 174 | 
| Conread position: | 333-990 | 
| Cow position: | chr6:58073468-58074160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 698 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 227, 502 | 
| Conread position: | 333-1035 | 
| Cow position: | chr6:9751617-9750900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 736 | 
| Alignm identity: | 518 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 61 | 
| Conread position: | 333-1116 | 
| Cow position: | chr6:10332677-10331859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 832 | 
| Alignm identity: | 588 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 602 | 
| Conread position: | 333-1148 | 
| Cow position: | chr6:15275659-15274810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 860 | 
| Alignm identity: | 582 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 334, 60 | 
| Conread position: | 333-1152 | 
| Cow position: | chr6:8562158-8562986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 854 | 
| Alignm identity: | 588 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 329, 81 | 
| Conread position: | 333-1159 | 
| Cow position: | chr6:48567911-48567082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 856 | 
| Alignm identity: | 590 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 267, 108 | 
| Conread position: | 334-534 | 
| Cow position: | chr6:55593647-55593846 (view UCSC Genome Browser custom track) | 
| Alignm length: | 201 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 334-608 | 
| Cow position: | chr6:33359231-33359506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 156, 47 | 
| Conread position: | 334-665 | 
| Cow position: | chr6:5122923-5122589 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 62, 34 | 
| Conread position: | 334-693 | 
| Cow position: | chr6:23074541-23074919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 12, 235 | 
| Conread position: | 334-809 | 
| Cow position: | chr6:6166837-6167324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 62, 45 | 
| Conread position: | 334-1151 | 
| Cow position: | chr6:53933414-53932571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 853 | 
| Alignm identity: | 607 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 312, 14 | 
| Conread position: | 335-655 | 
| Cow position: | chr6:52081861-52081535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 11, 76 | 
| Conread position: | 335-780 | 
| Cow position: | chr6:40813944-40814404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 231, 0 | 
| Conread position: | 336-488 | 
| Cow position: | chr6:57119899-57120050 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 336-511 | 
| Cow position: | chr6:53672926-53673100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 164, 114 | 
| Conread position: | 336-741 | 
| Cow position: | chr6:27887504-27887907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 73 | 
| Conread position: | 336-777 | 
| Cow position: | chr6:15962358-15961931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 164, 44 | 
| Conread position: | 336-792 | 
| Cow position: | chr6:4389296-4389753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 359, 158 | 
| Conread position: | 336-887 | 
| Cow position: | chr6:14839586-14839016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 333, 66 | 
| Conread position: | 337-506 | 
| Cow position: | chr6:43797313-43797145 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 337-513 | 
| Cow position: | chr6:55688215-55688392 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 337-540 | 
| Cow position: | chr6:25178741-25178537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 47, 86 | 
| Conread position: | 337-543 | 
| Cow position: | chr6:60419009-60419219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 54, 99 | 
| Conread position: | 337-557 | 
| Cow position: | chr6:6160167-6160379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 93, 36 | 
| Conread position: | 337-685 | 
| Cow position: | chr6:51970431-51970075 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 25, 17 | 
| Conread position: | 337-874 | 
| Cow position: | chr6:47025911-47026475 (view UCSC Genome Browser custom track) | 
| Alignm length: | 574 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 27 | 
| Conread position: | 338-529 | 
| Cow position: | chr6:6633406-6633216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 17, 26 | 
| Conread position: | 338-558 | 
| Cow position: | chr6:46813726-46813938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 338-900 | 
| Cow position: | chr6:58594677-58594086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 219, 55 | 
| Conread position: | 339-540 | 
| Cow position: | chr6:29085831-29086030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 339-634 | 
| Cow position: | chr6:42839364-42839656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 175, 68 | 
| Conread position: | 339-678 | 
| Cow position: | chr6:15181714-15182052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 223, 147 | 
| Conread position: | 339-693 | 
| Cow position: | chr6:38797726-38798091 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 83, 53 | 
| Conread position: | 339-789 | 
| Cow position: | chr6:50625051-50625506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 84, 44 | 
| Conread position: | 339-884 | 
| Cow position: | chr6:33852359-33851790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 168 | 
| Conread position: | 340-782 | 
| Cow position: | chr6:40251214-40250762 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 324, 14 | 
| Conread position: | 341-524 | 
| Cow position: | chr6:6119416-6119232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 104, 0 | 
| Conread position: | 341-569 | 
| Cow position: | chr6:29689443-29689660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 341-594 | 
| Cow position: | chr6:37611572-37611820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 219, 84 | 
| Conread position: | 341-601 | 
| Cow position: | chr6:22225412-22225150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 58 | 
| Conread position: | 341-688 | 
| Cow position: | chr6:20094126-20093779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 202, 25 | 
| Conread position: | 342-440 | 
| Cow position: | chr6:17334349-17334447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 99 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-460 | 
| Cow position: | chr6:32125538-32125656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-468 | 
| Cow position: | chr6:56849103-56849229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 85, 68 | 
| Conread position: | 342-471 | 
| Cow position: | chr6:1537552-1537683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 132 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 342-476 | 
| Cow position: | chr6:38995135-38995000 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 39, 108 | 
| Conread position: | 342-479 | 
| Cow position: | chr6:16191211-16191347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 342-479 | 
| Cow position: | chr6:64304756-64304618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 39, 0 | 
| Conread position: | 342-496 | 
| Cow position: | chr6:24759218-24759066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 342-498 | 
| Cow position: | chr6:25408095-25407940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 342-505 | 
| Cow position: | chr6:49692809-49692972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-515 | 
| Cow position: | chr6:10253361-10253535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 100, 0 | 
| Conread position: | 342-515 | 
| Cow position: | chr6:14707294-14707126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 342-515 | 
| Cow position: | chr6:59596845-59597018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-515 | 
| Cow position: | chr6:65874727-65874554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 84, 46 | 
| Conread position: | 342-517 | 
| Cow position: | chr6:24988630-24988806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 342-531 | 
| Cow position: | chr6:64314592-64314404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 342-534 | 
| Cow position: | chr6:47383175-47383367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-537 | 
| Cow position: | chr6:52248943-52248750 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 148, 100 | 
| Conread position: | 342-539 | 
| Cow position: | chr6:9839539-9839343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 342-539 | 
| Cow position: | chr6:41816061-41815874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 342-541 | 
| Cow position: | chr6:875904-875712 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 127, 0 | 
| Conread position: | 342-543 | 
| Cow position: | chr6:10106580-10106379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-548 | 
| Cow position: | chr6:12927158-12927362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 171, 0 | 
| Conread position: | 342-549 | 
| Cow position: | chr6:24631664-24631456 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 158, 0 | 
| Conread position: | 342-579 | 
| Cow position: | chr6:10176912-10176677 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 342-585 | 
| Cow position: | chr6:50446464-50446224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 342-598 | 
| Cow position: | chr6:4022118-4022379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 129, 37 | 
| Conread position: | 342-607 | 
| Cow position: | chr6:50637846-50638111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-613 | 
| Cow position: | chr6:36830622-36830905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 0 | 
| Conread position: | 342-621 | 
| Cow position: | chr6:19059864-19060142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 342-622 | 
| Cow position: | chr6:26697469-26697195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 77 | 
| Conread position: | 342-631 | 
| Cow position: | chr6:14148174-14148467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 203, 152 | 
| Conread position: | 342-635 | 
| Cow position: | chr6:55170060-55170346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 0 | 
| Conread position: | 342-643 | 
| Cow position: | chr6:53811158-53811455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 154, 31 | 
| Conread position: | 342-646 | 
| Cow position: | chr6:12406816-12407110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 149, 39 | 
| Conread position: | 342-658 | 
| Cow position: | chr6:726548-726236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 0 | 
| Conread position: | 342-663 | 
| Cow position: | chr6:17326837-17326519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 209, 41 | 
| Conread position: | 342-663 | 
| Cow position: | chr6:28415263-28414940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 164, 81 | 
| Conread position: | 342-663 | 
| Cow position: | chr6:33984386-33984717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 134, 47 | 
| Conread position: | 342-663 | 
| Cow position: | chr6:62921785-62921481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 322 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 342-668 | 
| Cow position: | chr6:50114288-50114612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 68 | 
| Conread position: | 342-671 | 
| Cow position: | chr6:14950067-14949743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 342-672 | 
| Cow position: | chr6:44098272-44098607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 142 | 
| Conread position: | 342-676 | 
| Cow position: | chr6:44869711-44869376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 242, 31 | 
| Conread position: | 342-677 | 
| Cow position: | chr6:22017587-22017250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 208, 41 | 
| Conread position: | 342-679 | 
| Cow position: | chr6:7104645-7104307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 21 | 
| Conread position: | 342-679 | 
| Cow position: | chr6:19044779-19045116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 159 | 
| Conread position: | 342-680 | 
| Cow position: | chr6:4903206-4902871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 77 | 
| Conread position: | 342-680 | 
| Cow position: | chr6:25223830-25223492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 43 | 
| Conread position: | 342-680 | 
| Cow position: | chr6:47977521-47977859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 203, 152 | 
| Conread position: | 342-680 | 
| Cow position: | chr6:55143678-55143343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 68 | 
| Conread position: | 342-682 | 
| Cow position: | chr6:529265-528921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 137 | 
| Conread position: | 342-687 | 
| Cow position: | chr6:6459699-6460047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 0 | 
| Conread position: | 342-690 | 
| Cow position: | chr6:1637367-1637015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 0 | 
| Conread position: | 342-690 | 
| Cow position: | chr6:52697206-52697557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 0 | 
| Conread position: | 342-691 | 
| Cow position: | chr6:539725-540071 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 233 | 
| Conread position: | 342-691 | 
| Cow position: | chr6:47171634-47171985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 181 | 
| Conread position: | 342-692 | 
| Cow position: | chr6:11160595-11160225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 65, 290 | 
| Conread position: | 342-692 | 
| Cow position: | chr6:34494262-34494611 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 56 | 
| Conread position: | 342-692 | 
| Cow position: | chr6:54865753-54865408 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 0 | 
| Conread position: | 342-693 | 
| Cow position: | chr6:42131386-42131022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 37 | 
| Conread position: | 342-693 | 
| Cow position: | chr6:49444706-49445062 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 102 | 
| Conread position: | 342-693 | 
| Cow position: | chr6:50973712-50973363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 208, 22 | 
| Conread position: | 342-693 | 
| Cow position: | chr6:66199234-66199580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 264, 50 | 
| Conread position: | 342-697 | 
| Cow position: | chr6:65930811-65931169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 39 | 
| Conread position: | 342-757 | 
| Cow position: | chr6:42420708-42421127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 218 | 
| Conread position: | 342-763 | 
| Cow position: | chr6:6471329-6470903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 111 | 
| Conread position: | 342-766 | 
| Cow position: | chr6:37761831-37762264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 189, 17 | 
| Conread position: | 342-767 | 
| Cow position: | chr6:39137081-39137510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 184 | 
| Conread position: | 342-775 | 
| Cow position: | chr6:10266543-10266102 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 96 | 
| Conread position: | 342-776 | 
| Cow position: | chr6:35873145-35872702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 348, 239 | 
| Conread position: | 342-779 | 
| Cow position: | chr6:11442380-11441933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 166 | 
| Conread position: | 342-779 | 
| Cow position: | chr6:27365756-27366209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 407 | 
| Conread position: | 342-779 | 
| Cow position: | chr6:46391135-46391580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 223, 0 | 
| Conread position: | 342-780 | 
| Cow position: | chr6:706585-707035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 53 | 
| Conread position: | 342-780 | 
| Cow position: | chr6:16418101-16417652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 367 | 
| Conread position: | 342-780 | 
| Cow position: | chr6:20552651-20552213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 66 | 
| Conread position: | 342-780 | 
| Cow position: | chr6:33466547-33466989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 295, 37 | 
| Conread position: | 342-783 | 
| Cow position: | chr6:17049964-17050412 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 51 | 
| Conread position: | 342-787 | 
| Cow position: | chr6:8753868-8753410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 350 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 238 | 
| Conread position: | 342-787 | 
| Cow position: | chr6:25218370-25218827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 152 | 
| Conread position: | 342-790 | 
| Cow position: | chr6:43345999-43345559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 79 | 
| Conread position: | 342-793 | 
| Cow position: | chr6:25358517-25358974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 464 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 80 | 
| Conread position: | 342-797 | 
| Cow position: | chr6:366656-367125 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 316, 0 | 
| Conread position: | 342-801 | 
| Cow position: | chr6:21832072-21831604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 418 | 
| Conread position: | 342-813 | 
| Cow position: | chr6:6721559-6722035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 106 | 
| Conread position: | 342-818 | 
| Cow position: | chr6:13741138-13741631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 313 | 
| Conread position: | 342-818 | 
| Cow position: | chr6:38595058-38594569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 100 | 
| Conread position: | 342-820 | 
| Cow position: | chr6:828243-827770 (view UCSC Genome Browser custom track) | 
| Alignm length: | 494 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 78 | 
| Conread position: | 342-822 | 
| Cow position: | chr6:57473836-57474319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 38 | 
| Conread position: | 342-823 | 
| Cow position: | chr6:45666347-45665845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 38 | 
| Conread position: | 342-824 | 
| Cow position: | chr6:39091991-39092447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 222, 165 | 
| Conread position: | 342-830 | 
| Cow position: | chr6:48872762-48872261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 37 | 
| Conread position: | 342-830 | 
| Cow position: | chr6:65844645-65845151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 0 | 
| Conread position: | 342-831 | 
| Cow position: | chr6:181952-181454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 501 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 291 | 
| Conread position: | 342-831 | 
| Cow position: | chr6:9737674-9737167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 509 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 203, 211 | 
| Conread position: | 342-831 | 
| Cow position: | chr6:10598575-10599066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 36 | 
| Conread position: | 342-841 | 
| Cow position: | chr6:14826789-14827286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 172 | 
| Conread position: | 342-868 | 
| Cow position: | chr6:28322731-28322205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 397 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 12 | 
| Conread position: | 342-874 | 
| Cow position: | chr6:53345237-53345788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 556 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 163 | 
| Conread position: | 342-876 | 
| Cow position: | chr6:28476608-28477177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 573 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 37 | 
| Conread position: | 342-880 | 
| Cow position: | chr6:10422584-10423169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 593 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 126 | 
| Conread position: | 342-881 | 
| Cow position: | chr6:51674357-51674916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 37 | 
| Conread position: | 342-901 | 
| Cow position: | chr6:46162073-46161500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 587 | 
| Alignm identity: | 408 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 34, 152 | 
| Conread position: | 342-918 | 
| Cow position: | chr6:24623556-24622934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 412 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 217, 275 | 
| Conread position: | 342-918 | 
| Cow position: | chr6:60456267-60456868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 117 | 
| Conread position: | 342-933 | 
| Cow position: | chr6:6613881-6614491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 325, 102 | 
| Conread position: | 342-935 | 
| Cow position: | chr6:9733389-9732783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 615 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 241, 58 | 
| Conread position: | 342-951 | 
| Cow position: | chr6:34075460-34076099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 580 | 
| Conread position: | 342-982 | 
| Cow position: | chr6:6768727-6769384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 671 | 
| Alignm identity: | 475 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 327, 145 | 
| Conread position: | 342-1000 | 
| Cow position: | chr6:28112248-28111566 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 554 | 
| Conread position: | 342-1022 | 
| Cow position: | chr6:1887209-1886523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 698 | 
| Alignm identity: | 517 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 89, 329 | 
| Conread position: | 342-1034 | 
| Cow position: | chr6:42565128-42565843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 724 | 
| Alignm identity: | 531 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 78 | 
| Conread position: | 342-1068 | 
| Cow position: | chr6:7801920-7801208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 737 | 
| Alignm identity: | 544 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 323, 139 | 
| Conread position: | 342-1068 | 
| Cow position: | chr6:21590167-21590892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 756 | 
| Alignm identity: | 545 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 12 | 
| Conread position: | 342-1072 | 
| Cow position: | chr6:42518409-42519177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 776 | 
| Alignm identity: | 538 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 680 | 
| Conread position: | 342-1104 | 
| Cow position: | chr6:39093207-39093972 (view UCSC Genome Browser custom track) | 
| Alignm length: | 790 | 
| Alignm identity: | 562 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 41 | 
| Conread position: | 342-1110 | 
| Cow position: | chr6:39358891-39358110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 800 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 331, 170 | 
| Conread position: | 342-1112 | 
| Cow position: | chr6:16765951-16765163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 799 | 
| Alignm identity: | 579 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 122 | 
| Conread position: | 342-1116 | 
| Cow position: | chr6:4468204-4469005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 819 | 
| Alignm identity: | 589 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 160 | 
| Conread position: | 342-1124 | 
| Cow position: | chr6:40031635-40032426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 813 | 
| Alignm identity: | 610 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 37 | 
| Conread position: | 342-1126 | 
| Cow position: | chr6:46465274-46466066 (view UCSC Genome Browser custom track) | 
| Alignm length: | 807 | 
| Alignm identity: | 558 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 69 | 
| Conread position: | 342-1126 | 
| Cow position: | chr6:67187136-67187934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 813 | 
| Alignm identity: | 590 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 301 | 
| Conread position: | 342-1127 | 
| Cow position: | chr6:26412825-26413639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 827 | 
| Alignm identity: | 550 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 69 | 
| Conread position: | 342-1127 | 
| Cow position: | chr6:61632156-61631358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 824 | 
| Alignm identity: | 585 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 352, 130 | 
| Conread position: | 342-1133 | 
| Cow position: | chr6:63252467-63251665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 825 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 130 | 
| Conread position: | 342-1137 | 
| Cow position: | chr6:35725527-35726350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 835 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 156, 43 | 
| Conread position: | 342-1156 | 
| Cow position: | chr6:17556832-17557655 (view UCSC Genome Browser custom track) | 
| Alignm length: | 850 | 
| Alignm identity: | 574 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 63 | 
| Conread position: | 343-524 | 
| Cow position: | chr6:54491258-54491072 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 16, 11 | 
| Conread position: | 343-801 | 
| Cow position: | chr6:15046657-15046175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 12 | 
| Conread position: | 344-692 | 
| Cow position: | chr6:15923767-15923426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 319, 100 | 
| Conread position: | 344-699 | 
| Cow position: | chr6:209310-209662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 213, 75 | 
| Conread position: | 344-894 | 
| Cow position: | chr6:16625383-16625957 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 487 | 
| Conread position: | 345-479 | 
| Cow position: | chr6:6278373-6278507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 345-479 | 
| Cow position: | chr6:28977907-28977771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 345-481 | 
| Cow position: | chr6:57551964-57551828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 345-485 | 
| Cow position: | chr6:54472059-54471916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 345-488 | 
| Cow position: | chr6:2110822-2110679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 345-488 | 
| Cow position: | chr6:39996000-39995855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 147 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 79, 12 | 
| Conread position: | 345-505 | 
| Cow position: | chr6:30896398-30896553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 345-510 | 
| Cow position: | chr6:34548613-34548780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 83, 48 | 
| Conread position: | 345-513 | 
| Cow position: | chr6:14690109-14690277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 345-514 | 
| Cow position: | chr6:9036297-9036128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 36, 49 | 
| Conread position: | 345-514 | 
| Cow position: | chr6:39162328-39162495 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 345-515 | 
| Cow position: | chr6:7995454-7995285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 345-521 | 
| Cow position: | chr6:35103947-35103774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 69, 0 | 
| Conread position: | 345-522 | 
| Cow position: | chr6:9844278-9844457 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 148, 23 | 
| Conread position: | 345-540 | 
| Cow position: | chr6:9025491-9025683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 85, 62 | 
| Conread position: | 345-540 | 
| Cow position: | chr6:36852074-36852270 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 45, 29 | 
| Conread position: | 345-540 | 
| Cow position: | chr6:54925220-54925031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 345-571 | 
| Cow position: | chr6:20328946-20329175 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 84, 226 | 
| Conread position: | 345-594 | 
| Cow position: | chr6:10236775-10237012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 121, 0 | 
| Conread position: | 345-634 | 
| Cow position: | chr6:65898569-65898289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 345-635 | 
| Cow position: | chr6:53461578-53461291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 0 | 
| Conread position: | 345-646 | 
| Cow position: | chr6:58950897-58950604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 114, 173 | 
| Conread position: | 345-660 | 
| Cow position: | chr6:35435031-35435359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 48 | 
| Conread position: | 345-663 | 
| Cow position: | chr6:3928727-3929044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 51, 87 | 
| Conread position: | 345-663 | 
| Cow position: | chr6:40139702-40139387 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 0 | 
| Conread position: | 345-663 | 
| Cow position: | chr6:46283512-46283201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 85, 47 | 
| Conread position: | 345-663 | 
| Cow position: | chr6:55141241-55140921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 149 | 
| Conread position: | 345-663 | 
| Cow position: | chr6:58880764-58881083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 215, 168 | 
| Conread position: | 345-665 | 
| Cow position: | chr6:47381263-47381588 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 197 | 
| Conread position: | 345-675 | 
| Cow position: | chr6:26914548-26914871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 0 | 
| Conread position: | 345-680 | 
| Cow position: | chr6:16626310-16626627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 337 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 242, 149 | 
| Conread position: | 345-680 | 
| Cow position: | chr6:17344792-17345126 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 20 | 
| Conread position: | 345-680 | 
| Cow position: | chr6:66550151-66550493 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 35, 150 | 
| Conread position: | 345-682 | 
| Cow position: | chr6:11466474-11466134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 215, 36 | 
| Conread position: | 345-690 | 
| Cow position: | chr6:31979144-31978802 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 38 | 
| Conread position: | 345-690 | 
| Cow position: | chr6:34030850-34031174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 345-690 | 
| Cow position: | chr6:40157943-40157592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 68, 36 | 
| Conread position: | 345-693 | 
| Cow position: | chr6:16276321-16276681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 77, 69 | 
| Conread position: | 345-710 | 
| Cow position: | chr6:51879317-51879695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 94, 47 | 
| Conread position: | 345-725 | 
| Cow position: | chr6:53739884-53740265 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 207 | 
| Conread position: | 345-737 | 
| Cow position: | chr6:55762832-55763233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 345-762 | 
| Cow position: | chr6:54872599-54872169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 11, 20 | 
| Conread position: | 345-766 | 
| Cow position: | chr6:54433572-54433135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 154, 147 | 
| Conread position: | 345-767 | 
| Cow position: | chr6:65016448-65016014 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 23 | 
| Conread position: | 345-780 | 
| Cow position: | chr6:3885915-3885465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 345-780 | 
| Cow position: | chr6:11288875-11288426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 0 | 
| Conread position: | 345-787 | 
| Cow position: | chr6:8205780-8206235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 408 | 
| Conread position: | 345-787 | 
| Cow position: | chr6:24075110-24074667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 75 | 
| Conread position: | 345-809 | 
| Cow position: | chr6:12739032-12739509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 64, 302 | 
| Conread position: | 345-823 | 
| Cow position: | chr6:26654709-26655188 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 58, 28 | 
| Conread position: | 345-825 | 
| Cow position: | chr6:61162153-61162653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 47 | 
| Conread position: | 345-836 | 
| Cow position: | chr6:54357938-54357422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 87 | 
| Conread position: | 345-838 | 
| Cow position: | chr6:3095524-3094995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 382 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 0 | 
| Conread position: | 345-880 | 
| Cow position: | chr6:2012472-2013022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 563 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 229, 33 | 
| Conread position: | 345-884 | 
| Cow position: | chr6:54293578-54294115 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 208, 276 | 
| Conread position: | 345-932 | 
| Cow position: | chr6:47539968-47540584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 14 | 
| Conread position: | 345-1002 | 
| Cow position: | chr6:46633704-46634373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 470 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 35 | 
| Conread position: | 345-1014 | 
| Cow position: | chr6:6182134-6181432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 705 | 
| Alignm identity: | 486 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 572 | 
| Conread position: | 345-1015 | 
| Cow position: | chr6:55040774-55040077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 700 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 318, 594 | 
| Conread position: | 345-1018 | 
| Cow position: | chr6:43789775-43789076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 708 | 
| Alignm identity: | 482 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 132 | 
| Conread position: | 345-1052 | 
| Cow position: | chr6:67214188-67214924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 741 | 
| Alignm identity: | 529 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 318, 167 | 
| Conread position: | 345-1054 | 
| Cow position: | chr6:8210138-8209428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 727 | 
| Alignm identity: | 521 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 347, 187 | 
| Conread position: | 345-1105 | 
| Cow position: | chr6:46292886-46292127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 552 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 14 | 
| Conread position: | 345-1111 | 
| Cow position: | chr6:29484567-29485317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 784 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 424, 127 | 
| Conread position: | 345-1116 | 
| Cow position: | chr6:2607050-2607847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 811 | 
| Alignm identity: | 580 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 488 | 
| Conread position: | 345-1116 | 
| Cow position: | chr6:23695444-23696233 (view UCSC Genome Browser custom track) | 
| Alignm length: | 799 | 
| Alignm identity: | 589 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 318, 47 | 
| Conread position: | 345-1120 | 
| Cow position: | chr6:47574378-47575134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 793 | 
| Alignm identity: | 564 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 424, 155 | 
| Conread position: | 345-1124 | 
| Cow position: | chr6:35181801-35181007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 805 | 
| Alignm identity: | 590 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 113 | 
| Conread position: | 345-1126 | 
| Cow position: | chr6:11192987-11192229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 807 | 
| Alignm identity: | 567 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 318, 42 | 
| Conread position: | 345-1127 | 
| Cow position: | chr6:32121340-32122146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 828 | 
| Alignm identity: | 594 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 93 | 
| Conread position: | 346-470 | 
| Cow position: | chr6:7216379-7216501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 125 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 346-479 | 
| Cow position: | chr6:16620209-16620342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 112, 99 | 
| Conread position: | 346-515 | 
| Cow position: | chr6:1294048-1293883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 346-539 | 
| Cow position: | chr6:10487041-10487236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 60, 104 | 
| Conread position: | 346-694 | 
| Cow position: | chr6:34115468-34115811 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 81 | 
| Conread position: | 346-766 | 
| Cow position: | chr6:11032750-11032318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 208 | 
| Conread position: | 346-780 | 
| Cow position: | chr6:40550107-40549660 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 199, 207 | 
| Conread position: | 346-780 | 
| Cow position: | chr6:41232058-41232500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 321, 147 | 
| Conread position: | 346-891 | 
| Cow position: | chr6:32211178-32210613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 574 | 
| Alignm identity: | 430 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 92 | 
| Conread position: | 346-1022 | 
| Cow position: | chr6:35613968-35613273 (view UCSC Genome Browser custom track) | 
| Alignm length: | 707 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 236 | 
| Conread position: | 347-474 | 
| Cow position: | chr6:19694408-19694535 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 347-477 | 
| Cow position: | chr6:39912917-39913047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 347-479 | 
| Cow position: | chr6:58031366-58031492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 133 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 78, 0 | 
| Conread position: | 347-509 | 
| Cow position: | chr6:37388161-37388323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 347-521 | 
| Cow position: | chr6:62333155-62332982 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 155, 79 | 
| Conread position: | 347-527 | 
| Cow position: | chr6:68031041-68031221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 347-663 | 
| Cow position: | chr6:55944847-55944524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 88, 24 | 
| Conread position: | 347-685 | 
| Cow position: | chr6:28136333-28136674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 315, 0 | 
| Conread position: | 347-693 | 
| Cow position: | chr6:9320875-9321224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 0 | 
| Conread position: | 347-693 | 
| Cow position: | chr6:28065584-28065931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 320, 79 | 
| Conread position: | 347-693 | 
| Cow position: | chr6:44598456-44598107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 0 | 
| Conread position: | 347-693 | 
| Cow position: | chr6:59296234-59296572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 0 | 
| Conread position: | 347-779 | 
| Cow position: | chr6:44146356-44145910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 205 | 
| Conread position: | 347-779 | 
| Cow position: | chr6:51869532-51869974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 220 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:7467056-7466608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 0 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:18912140-18911691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 66, 207 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:19719162-19719613 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:28000801-28000355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 204 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:43039507-43039952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 205 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:46948410-46948855 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 109 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:55239285-55239733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 205 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:57308819-57309264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 316, 45 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:58940775-58940329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 61 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:63040738-63040292 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 36 | 
| Conread position: | 347-782 | 
| Cow position: | chr6:67553827-67554274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 137 | 
| Conread position: | 347-998 | 
| Cow position: | chr6:56842617-56843274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 326, 125 | 
| Conread position: | 347-1054 | 
| Cow position: | chr6:6342879-6343607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 747 | 
| Alignm identity: | 541 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 141 | 
| Conread position: | 347-1054 | 
| Cow position: | chr6:46570573-46571282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 732 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 322, 76 | 
| Conread position: | 348-557 | 
| Cow position: | chr6:48343436-48343649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 349-586 | 
| Cow position: | chr6:51544484-51544244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 206 | 
| Conread position: | 349-693 | 
| Cow position: | chr6:29503483-29503826 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 207, 260 | 
| Conread position: | 349-777 | 
| Cow position: | chr6:41876604-41876165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 324, 0 | 
| Conread position: | 350-445 | 
| Cow position: | chr6:25436168-25436073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 96 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-450 | 
| Cow position: | chr6:33808836-33808736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 101 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-454 | 
| Cow position: | chr6:54978931-54978827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 105 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-477 | 
| Cow position: | chr6:34195411-34195538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-477 | 
| Cow position: | chr6:42988204-42988078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 100 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 350-495 | 
| Cow position: | chr6:1245323-1245178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-508 | 
| Cow position: | chr6:126537-126379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-521 | 
| Cow position: | chr6:50503172-50503341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 350-526 | 
| Cow position: | chr6:889153-889329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-527 | 
| Cow position: | chr6:63177641-63177818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-530 | 
| Cow position: | chr6:45479490-45479310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-541 | 
| Cow position: | chr6:57329876-57330067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-563 | 
| Cow position: | chr6:54900687-54900900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-612 | 
| Cow position: | chr6:39897465-39897203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-620 | 
| Cow position: | chr6:34236196-34235933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 190, 43 | 
| Conread position: | 350-637 | 
| Cow position: | chr6:30704973-30705260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-656 | 
| Cow position: | chr6:18474459-18474153 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 350-660 | 
| Cow position: | chr6:28675126-28675437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-663 | 
| Cow position: | chr6:48579125-48578795 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 143, 0 | 
| Conread position: | 350-690 | 
| Cow position: | chr6:20515173-20515516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 0 | 
| Conread position: | 350-693 | 
| Cow position: | chr6:22628130-22627784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 0 | 
| Conread position: | 350-693 | 
| Cow position: | chr6:39080515-39080861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-693 | 
| Cow position: | chr6:45723527-45723180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 204 | 
| Conread position: | 350-693 | 
| Cow position: | chr6:45747410-45747063 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 0 | 
| Conread position: | 350-761 | 
| Cow position: | chr6:7009193-7009587 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 197, 116 | 
| Conread position: | 350-766 | 
| Cow position: | chr6:30708599-30708172 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-772 | 
| Cow position: | chr6:58390424-58389996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 86 | 
| Conread position: | 350-779 | 
| Cow position: | chr6:11401918-11402359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 283 | 
| Conread position: | 350-780 | 
| Cow position: | chr6:6557469-6557912 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-780 | 
| Cow position: | chr6:14389128-14388685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-780 | 
| Cow position: | chr6:25363149-25363592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-780 | 
| Cow position: | chr6:27541159-27541602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-780 | 
| Cow position: | chr6:41823239-41822796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:444330-443885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:2867862-2867417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:2875438-2875002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:9235110-9235555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 359 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:12971994-12972439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:13488992-13489437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 0 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:19515448-19515893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:20581181-20580736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:21163901-21164346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:25375856-25376302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:27173439-27173884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 0 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:36258552-36258997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 193, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:41158723-41158278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:45765523-45765078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 203 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:45976097-45976542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:46607909-46607466 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 137 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:53271252-53271697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 0 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:55388335-55388779 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 0 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:56888010-56888446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:59052016-59052461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:59834676-59835121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 202 | 
| Conread position: | 350-782 | 
| Cow position: | chr6:62665373-62665819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 0 | 
| Conread position: | 350-787 | 
| Cow position: | chr6:34017126-34016675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 350-792 | 
| Cow position: | chr6:53542885-53542416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 28 | 
| Conread position: | 350-879 | 
| Cow position: | chr6:48807537-48806993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 71 | 
| Conread position: | 350-881 | 
| Cow position: | chr6:52557025-52556472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 557 | 
| Alignm identity: | 401 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 71 | 
| Conread position: | 350-1022 | 
| Cow position: | chr6:4865090-4864403 (view UCSC Genome Browser custom track) | 
| Alignm length: | 697 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 23 | 
| Conread position: | 350-1036 | 
| Cow position: | chr6:11169169-11169861 (view UCSC Genome Browser custom track) | 
| Alignm length: | 714 | 
| Alignm identity: | 512 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 314, 27 | 
| Conread position: | 350-1128 | 
| Cow position: | chr6:28147704-28148504 (view UCSC Genome Browser custom track) | 
| Alignm length: | 810 | 
| Alignm identity: | 583 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 319, 253 | 
| Conread position: | 351-540 | 
| Cow position: | chr6:65829587-65829401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 351-792 | 
| Cow position: | chr6:43394133-43394571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 204, 107 | 
| Conread position: | 352-663 | 
| Cow position: | chr6:47988517-47988822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 352-666 | 
| Cow position: | chr6:57680939-57680617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 38, 119 | 
| Conread position: | 352-782 | 
| Cow position: | chr6:67403768-67403325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 312, 0 | 
| Conread position: | 353-818 | 
| Cow position: | chr6:6596030-6596512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 309 | 
| Conread position: | 354-446 | 
| Cow position: | chr6:55360973-55360881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 93 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-446 | 
| Cow position: | chr6:55361193-55361101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 93 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-467 | 
| Cow position: | chr6:42897792-42897905 (view UCSC Genome Browser custom track) | 
| Alignm length: | 114 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-482 | 
| Cow position: | chr6:46225363-46225235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 113 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-512 | 
| Cow position: | chr6:41437471-41437629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-519 | 
| Cow position: | chr6:18874776-18874941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-541 | 
| Cow position: | chr6:6569286-6569473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-541 | 
| Cow position: | chr6:8207828-8208015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-541 | 
| Cow position: | chr6:10536377-10536190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-541 | 
| Cow position: | chr6:19684365-19684178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-541 | 
| Cow position: | chr6:37217241-37217428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-541 | 
| Cow position: | chr6:53537678-53537865 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 354-563 | 
| Cow position: | chr6:8442955-8442746 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-563 | 
| Cow position: | chr6:28401247-28401454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 211 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 139 | 
| Conread position: | 354-589 | 
| Cow position: | chr6:26324598-26324364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 66 | 
| Conread position: | 354-617 | 
| Cow position: | chr6:60379765-60380028 (view UCSC Genome Browser custom track) | 
| Alignm length: | 265 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-623 | 
| Cow position: | chr6:1274255-1273991 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 26 | 
| Conread position: | 354-631 | 
| Cow position: | chr6:55289566-55289291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 71 | 
| Conread position: | 354-632 | 
| Cow position: | chr6:41495236-41494958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-635 | 
| Cow position: | chr6:29298819-29299099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 354-650 | 
| Cow position: | chr6:40760627-40760939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 52 | 
| Conread position: | 354-662 | 
| Cow position: | chr6:56557010-56556702 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-663 | 
| Cow position: | chr6:38440415-38440730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 88 | 
| Conread position: | 354-663 | 
| Cow position: | chr6:44131251-44130942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-671 | 
| Cow position: | chr6:32665032-32665349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-692 | 
| Cow position: | chr6:28700963-28700622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-693 | 
| Cow position: | chr6:327761-327420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 332 | 
| Conread position: | 354-693 | 
| Cow position: | chr6:19707031-19707373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-693 | 
| Cow position: | chr6:19712643-19712306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-693 | 
| Cow position: | chr6:26771520-26771177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-693 | 
| Cow position: | chr6:28487059-28486717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 315, 0 | 
| Conread position: | 354-693 | 
| Cow position: | chr6:63714674-63714346 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 95 | 
| Conread position: | 354-708 | 
| Cow position: | chr6:11389012-11388665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 213, 0 | 
| Conread position: | 354-766 | 
| Cow position: | chr6:25374506-25374083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-777 | 
| Cow position: | chr6:19103306-19102871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 200 | 
| Conread position: | 354-777 | 
| Cow position: | chr6:49794559-49794996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 199 | 
| Conread position: | 354-779 | 
| Cow position: | chr6:1406550-1406113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 317, 31 | 
| Conread position: | 354-779 | 
| Cow position: | chr6:10044808-10045246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-779 | 
| Cow position: | chr6:13307796-13307367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 172 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:1797227-1797668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:2196286-2196731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:2390075-2389634 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:3152814-3153256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:7449097-7449538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:8284173-8283754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 81 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:10013399-10013840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:11020260-11020701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:11453265-11452824 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:12998018-12998459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:13494491-13494048 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 225, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:19570329-19569894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:20215794-20215353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:22737104-22736667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:23568006-23567565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:27093985-27093545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:28184719-28184278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:28294223-28293782 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:33489632-33489192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:33884481-33884040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:38061214-38061654 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:40278654-40279095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:40450066-40449624 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:41834903-41835343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 66 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:43049614-43050051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 25 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:45901391-45900950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 199 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:45937881-45938322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:52481947-52482388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:57521777-57522218 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:61549125-61548684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 310, 0 | 
| Conread position: | 354-782 | 
| Cow position: | chr6:65818630-65818191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 200 | 
| Conread position: | 354-838 | 
| Cow position: | chr6:26830129-26830633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 315, 0 | 
| Conread position: | 354-838 | 
| Cow position: | chr6:43921238-43921740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 375 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 198 | 
| Conread position: | 354-1004 | 
| Cow position: | chr6:3574892-3575568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 685 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 84 | 
| Conread position: | 354-1124 | 
| Cow position: | chr6:18987685-18988438 (view UCSC Genome Browser custom track) | 
| Alignm length: | 797 | 
| Alignm identity: | 575 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 313, 56 | 
| Conread position: | 355-515 | 
| Cow position: | chr6:68377339-68377181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 355-614 | 
| Cow position: | chr6:451661-451402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 355-720 | 
| Cow position: | chr6:19809135-19809505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 128 | 
| Conread position: | 355-782 | 
| Cow position: | chr6:20173985-20174425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 197 | 
| Conread position: | 355-1048 | 
| Cow position: | chr6:6068231-6067531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 723 | 
| Alignm identity: | 534 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 26 | 
| Conread position: | 356-782 | 
| Cow position: | chr6:22804917-22804474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 194, 37 | 
| Conread position: | 357-693 | 
| Cow position: | chr6:20268143-20268471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 307, 57 | 
| Conread position: | 357-780 | 
| Cow position: | chr6:25790133-25789696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 0 | 
| Conread position: | 358-447 | 
| Cow position: | chr6:43439913-43440002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 90 | 
| Alignm identity: | 79 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 358-460 | 
| Cow position: | chr6:119206-119308 (view UCSC Genome Browser custom track) | 
| Alignm length: | 103 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 358-488 | 
| Cow position: | chr6:40284356-40284226 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 358-516 | 
| Cow position: | chr6:46763800-46763643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 137, 0 | 
| Conread position: | 358-550 | 
| Cow position: | chr6:44623547-44623355 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 358-550 | 
| Cow position: | chr6:61055782-61055590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 75, 99 | 
| Conread position: | 358-563 | 
| Cow position: | chr6:35703925-35703727 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 358-570 | 
| Cow position: | chr6:561290-561084 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 46, 0 | 
| Conread position: | 358-570 | 
| Cow position: | chr6:15987036-15987246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 0 | 
| Conread position: | 358-586 | 
| Cow position: | chr6:7191018-7190788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 232 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 212 | 
| Conread position: | 358-634 | 
| Cow position: | chr6:43087009-43086733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 169 | 
| Conread position: | 358-663 | 
| Cow position: | chr6:619016-619309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 199, 16 | 
| Conread position: | 358-663 | 
| Cow position: | chr6:30076666-30076357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 187, 53 | 
| Conread position: | 358-663 | 
| Cow position: | chr6:45279699-45279388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 147, 232 | 
| Conread position: | 358-668 | 
| Cow position: | chr6:1468329-1468026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 158, 34 | 
| Conread position: | 358-682 | 
| Cow position: | chr6:57383970-57384283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 358-689 | 
| Cow position: | chr6:8303672-8303335 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 30, 22 | 
| Conread position: | 358-693 | 
| Cow position: | chr6:12662723-12662386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 35 | 
| Conread position: | 358-693 | 
| Cow position: | chr6:27870218-27870556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 62 | 
| Conread position: | 358-693 | 
| Cow position: | chr6:28161015-28161350 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 132 | 
| Conread position: | 358-693 | 
| Cow position: | chr6:41192953-41193294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 242, 0 | 
| Conread position: | 358-711 | 
| Cow position: | chr6:24044946-24044582 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 38, 23 | 
| Conread position: | 358-720 | 
| Cow position: | chr6:65921149-65920789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 136 | 
| Conread position: | 358-747 | 
| Cow position: | chr6:33451427-33451822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 230 | 
| Conread position: | 358-761 | 
| Cow position: | chr6:29430437-29430841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 189, 12 | 
| Conread position: | 358-762 | 
| Cow position: | chr6:9756005-9755616 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 196, 21 | 
| Conread position: | 358-777 | 
| Cow position: | chr6:7175044-7174621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 132, 161 | 
| Conread position: | 358-777 | 
| Cow position: | chr6:56441474-56441042 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 305, 0 | 
| Conread position: | 358-779 | 
| Cow position: | chr6:1279054-1278623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 55 | 
| Conread position: | 358-779 | 
| Cow position: | chr6:31752512-31752940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 83 | 
| Conread position: | 358-780 | 
| Cow position: | chr6:64720753-64721180 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 309, 204 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:6568628-6568199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 364, 275 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:7137736-7137300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 0 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:11869329-11868894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 22 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:16645482-16645914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 21 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:17632164-17631726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 195 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:18803453-18803017 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 304, 394 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:21712312-21712749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 0 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:22043404-22042970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 290 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:23879453-23879016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 0 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:26667419-26666981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:31520044-31520481 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 304, 0 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:36901616-36902053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 194 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:38917434-38916996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 196 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:43621625-43622057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 194 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:54887009-54886572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 306, 0 | 
| Conread position: | 358-782 | 
| Cow position: | chr6:56926648-56927090 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 176 | 
| Conread position: | 358-786 | 
| Cow position: | chr6:39998872-39998433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 309, 34 | 
| Conread position: | 358-790 | 
| Cow position: | chr6:5501339-5500893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 25 | 
| Conread position: | 358-790 | 
| Cow position: | chr6:16049690-16049252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 203 | 
| Conread position: | 358-809 | 
| Cow position: | chr6:50800961-50800484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 286 | 
| Conread position: | 358-813 | 
| Cow position: | chr6:65891473-65891015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 23 | 
| Conread position: | 358-814 | 
| Cow position: | chr6:68829899-68830366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 441 | 
| Conread position: | 358-819 | 
| Cow position: | chr6:38900300-38899818 (view UCSC Genome Browser custom track) | 
| Alignm length: | 493 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 202, 45 | 
| Conread position: | 358-824 | 
| Cow position: | chr6:14064201-14063720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 372 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 305, 140 | 
| Conread position: | 358-825 | 
| Cow position: | chr6:42931639-42931163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 79 | 
| Conread position: | 358-847 | 
| Cow position: | chr6:49411220-49410725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 507 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 311, 134 | 
| Conread position: | 358-895 | 
| Cow position: | chr6:16618615-16619162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 558 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 190 | 
| Conread position: | 358-985 | 
| Cow position: | chr6:3271875-3271240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 650 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 252, 439 | 
| Conread position: | 358-1023 | 
| Cow position: | chr6:12550724-12551415 (view UCSC Genome Browser custom track) | 
| Alignm length: | 697 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 305, 394 | 
| Conread position: | 358-1035 | 
| Cow position: | chr6:47339907-47339199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 711 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 192, 508 | 
| Conread position: | 358-1054 | 
| Cow position: | chr6:5302939-5302245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 715 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 10 | 
| Conread position: | 358-1112 | 
| Cow position: | chr6:8636735-8637517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 790 | 
| Alignm identity: | 547 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 302, 35 | 
| Conread position: | 359-498 | 
| Cow position: | chr6:2546000-2546138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 359-528 | 
| Cow position: | chr6:54321101-54320935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 119, 47 | 
| Conread position: | 359-533 | 
| Cow position: | chr6:14758922-14758755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 96, 33 | 
| Conread position: | 359-613 | 
| Cow position: | chr6:15481168-15481424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 191, 97 | 
| Conread position: | 359-645 | 
| Cow position: | chr6:12518686-12518977 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 56, 42 | 
| Conread position: | 359-651 | 
| Cow position: | chr6:3545098-3545398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 148, 106 | 
| Conread position: | 359-656 | 
| Cow position: | chr6:28549168-28548856 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 42, 20 | 
| Conread position: | 359-656 | 
| Cow position: | chr6:55660274-55659979 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 191, 64 | 
| Conread position: | 359-662 | 
| Cow position: | chr6:4046576-4046274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 59, 33 | 
| Conread position: | 359-662 | 
| Cow position: | chr6:16630097-16630398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 30, 72 | 
| Conread position: | 359-663 | 
| Cow position: | chr6:10570299-10569996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 268, 20 | 
| Conread position: | 359-663 | 
| Cow position: | chr6:26636247-26636556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 70, 48 | 
| Conread position: | 359-663 | 
| Cow position: | chr6:49733392-49733696 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 181, 245 | 
| Conread position: | 359-663 | 
| Cow position: | chr6:65858743-65858446 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 117, 39 | 
| Conread position: | 359-682 | 
| Cow position: | chr6:24583784-24583455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 190, 133 | 
| Conread position: | 359-682 | 
| Cow position: | chr6:45065573-45065253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 189, 61 | 
| Conread position: | 359-692 | 
| Cow position: | chr6:23811161-23811496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 191, 26 | 
| Conread position: | 359-693 | 
| Cow position: | chr6:11185031-11185368 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 184, 193 | 
| Conread position: | 359-693 | 
| Cow position: | chr6:18462947-18462605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 179, 81 | 
| Conread position: | 359-706 | 
| Cow position: | chr6:15783382-15783031 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 81 | 
| Conread position: | 359-713 | 
| Cow position: | chr6:6039423-6039784 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 59, 86 | 
| Conread position: | 359-760 | 
| Cow position: | chr6:6079452-6079033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 117 | 
| Conread position: | 359-761 | 
| Cow position: | chr6:23889215-23888794 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 133, 24 | 
| Conread position: | 359-761 | 
| Cow position: | chr6:30893064-30892651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 404 | 
| Conread position: | 359-777 | 
| Cow position: | chr6:6340612-6341039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 191, 61 | 
| Conread position: | 359-782 | 
| Cow position: | chr6:27152282-27152718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 305, 0 | 
| Conread position: | 359-782 | 
| Cow position: | chr6:61051516-61051080 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 194 | 
| Conread position: | 359-792 | 
| Cow position: | chr6:55266155-55265731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 308, 115 | 
| Conread position: | 359-810 | 
| Cow position: | chr6:2088118-2088590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 26 | 
| Conread position: | 359-817 | 
| Cow position: | chr6:35121797-35121337 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 34 | 
| Conread position: | 359-819 | 
| Cow position: | chr6:32262531-32262054 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 22 | 
| Conread position: | 359-839 | 
| Cow position: | chr6:52120688-52121192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 511 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 179 | 
| Conread position: | 360-511 | 
| Cow position: | chr6:30159030-30159174 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 70, 22 | 
| Conread position: | 360-689 | 
| Cow position: | chr6:28503795-28504132 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 185, 262 | 
| Conread position: | 360-824 | 
| Cow position: | chr6:49442574-49443027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 307, 33 | 
| Conread position: | 360-900 | 
| Cow position: | chr6:2366684-2366094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 600 | 
| Alignm identity: | 407 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 191, 50 | 
| Conread position: | 361-663 | 
| Cow position: | chr6:55456468-55456159 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 191, 83 | 
| Conread position: | 361-679 | 
| Cow position: | chr6:48327815-48328138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 67, 32 | 
| Conread position: | 361-680 | 
| Cow position: | chr6:42742209-42742525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 142 | 
| Conread position: | 361-692 | 
| Cow position: | chr6:60441604-60441929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 250, 0 | 
| Conread position: | 361-760 | 
| Cow position: | chr6:36826216-36826630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 41, 55 | 
| Conread position: | 361-782 | 
| Cow position: | chr6:49579706-49580140 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 303, 0 | 
| Conread position: | 361-839 | 
| Cow position: | chr6:12622932-12623427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 500 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 302, 12 | 
| Conread position: | 361-1003 | 
| Cow position: | chr6:28084563-28083897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 684 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 34 | 
| Conread position: | 362-502 | 
| Cow position: | chr6:24545222-24545364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 362-682 | 
| Cow position: | chr6:16298111-16298440 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 195, 30 | 
| Conread position: | 362-690 | 
| Cow position: | chr6:35416372-35416025 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 87, 63 | 
| Conread position: | 362-692 | 
| Cow position: | chr6:27477463-27477796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 18 | 
| Conread position: | 362-693 | 
| Cow position: | chr6:37829951-37829622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 185, 23 | 
| Conread position: | 362-841 | 
| Cow position: | chr6:17865000-17865499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 502 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 138 | 
| Conread position: | 363-499 | 
| Cow position: | chr6:57857483-57857622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 39, 54 | 
| Conread position: | 363-557 | 
| Cow position: | chr6:20419997-20419805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 164, 18 | 
| Conread position: | 363-657 | 
| Cow position: | chr6:22663253-22662952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 25, 10 | 
| Conread position: | 363-762 | 
| Cow position: | chr6:10425880-10426301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 144, 0 | 
| Conread position: | 363-782 | 
| Cow position: | chr6:43955163-43955595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 189 | 
| Conread position: | 363-808 | 
| Cow position: | chr6:19328377-19327933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 30 | 
| Conread position: | 363-809 | 
| Cow position: | chr6:6187726-6188179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 91 | 
| Conread position: | 363-862 | 
| Cow position: | chr6:39088236-39088754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 524 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 29 | 
| Conread position: | 364-682 | 
| Cow position: | chr6:21584299-21583974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 188, 19 | 
| Conread position: | 364-766 | 
| Cow position: | chr6:65011764-65012163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 207, 16 | 
| Conread position: | 365-613 | 
| Cow position: | chr6:35710861-35711111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 19, 40 | 
| Conread position: | 365-682 | 
| Cow position: | chr6:9322605-9322920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 100 | 
| Conread position: | 365-1100 | 
| Cow position: | chr6:27240501-27239781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 756 | 
| Alignm identity: | 527 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 219 | 
| Conread position: | 366-505 | 
| Cow position: | chr6:32135223-32135363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 15, 0 | 
| Conread position: | 366-1125 | 
| Cow position: | chr6:5096069-5095294 (view UCSC Genome Browser custom track) | 
| Alignm length: | 800 | 
| Alignm identity: | 588 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 297, 60 | 
| Conread position: | 367-658 | 
| Cow position: | chr6:7824077-7824373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 154 | 
| Conread position: | 367-681 | 
| Cow position: | chr6:68048716-68049030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 302, 221 | 
| Conread position: | 367-1137 | 
| Cow position: | chr6:10612322-10613088 (view UCSC Genome Browser custom track) | 
| Alignm length: | 799 | 
| Alignm identity: | 555 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 284 | 
| Conread position: | 368-629 | 
| Cow position: | chr6:51385871-51386137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 177, 20 | 
| Conread position: | 368-671 | 
| Cow position: | chr6:30315661-30315351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 28, 0 | 
| Conread position: | 368-771 | 
| Cow position: | chr6:222972-222550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 299, 138 | 
| Conread position: | 368-801 | 
| Cow position: | chr6:3719451-3719897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 299, 55 | 
| Conread position: | 368-830 | 
| Cow position: | chr6:28180496-28180022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 26 | 
| Conread position: | 368-1102 | 
| Cow position: | chr6:54648058-54647274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 553 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 14 | 
| Conread position: | 369-518 | 
| Cow position: | chr6:11269462-11269317 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 369-667 | 
| Cow position: | chr6:2894697-2894993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 139, 0 | 
| Conread position: | 369-693 | 
| Cow position: | chr6:39099624-39099289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 32, 52 | 
| Conread position: | 369-1144 | 
| Cow position: | chr6:18448046-18447247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 814 | 
| Alignm identity: | 599 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 212, 459 | 
| Conread position: | 370-628 | 
| Cow position: | chr6:18969224-18968962 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 80, 50 | 
| Conread position: | 370-779 | 
| Cow position: | chr6:12578045-12578459 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 153, 106 | 
| Conread position: | 370-782 | 
| Cow position: | chr6:8194762-8195186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 316 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 98 | 
| Conread position: | 370-782 | 
| Cow position: | chr6:31548960-31548538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 425 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 175, 50 | 
| Conread position: | 371-573 | 
| Cow position: | chr6:41567303-41567505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 181 | 
| Conread position: | 371-655 | 
| Cow position: | chr6:21222406-21222693 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 174, 43 | 
| Conread position: | 371-693 | 
| Cow position: | chr6:13597550-13597225 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 182 | 
| Conread position: | 371-693 | 
| Cow position: | chr6:49963544-49963219 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 182 | 
| Conread position: | 371-767 | 
| Cow position: | chr6:50527121-50527531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 311 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 0 | 
| Conread position: | 371-773 | 
| Cow position: | chr6:19115394-19115797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 84 | 
| Conread position: | 371-1127 | 
| Cow position: | chr6:15938375-15937602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 787 | 
| Alignm identity: | 572 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 127 | 
| Conread position: | 372-790 | 
| Cow position: | chr6:42106572-42106154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 291, 35 | 
| Conread position: | 373-613 | 
| Cow position: | chr6:9368606-9368354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 373-780 | 
| Cow position: | chr6:2185881-2185462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 294, 356 | 
| Conread position: | 374-544 | 
| Cow position: | chr6:46667242-46667074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 42, 19 | 
| Conread position: | 374-662 | 
| Cow position: | chr6:16132628-16132917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 182, 0 | 
| Conread position: | 374-663 | 
| Cow position: | chr6:6038628-6038343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 188, 19 | 
| Conread position: | 374-690 | 
| Cow position: | chr6:15182360-15182675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 248, 194 | 
| Conread position: | 374-782 | 
| Cow position: | chr6:25207058-25207479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 178 | 
| Conread position: | 374-809 | 
| Cow position: | chr6:6839210-6839658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 14, 35 | 
| Conread position: | 374-810 | 
| Cow position: | chr6:31953207-31952744 (view UCSC Genome Browser custom track) | 
| Alignm length: | 472 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 155, 19 | 
| Conread position: | 374-946 | 
| Cow position: | chr6:18962047-18961447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 607 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 289, 47 | 
| Conread position: | 374-1015 | 
| Cow position: | chr6:25822525-25821871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 447 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 24 | 
| Conread position: | 375-539 | 
| Cow position: | chr6:9207859-9207692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 375-636 | 
| Cow position: | chr6:55040901-55041162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 375-663 | 
| Cow position: | chr6:39957835-39958127 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 172, 78 | 
| Conread position: | 375-931 | 
| Cow position: | chr6:38233481-38234011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 575 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 16 | 
| Conread position: | 376-692 | 
| Cow position: | chr6:34253262-34253585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 331 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 171, 20 | 
| Conread position: | 376-693 | 
| Cow position: | chr6:24757874-24757554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 288, 0 | 
| Conread position: | 376-693 | 
| Cow position: | chr6:49707124-49706804 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 291, 0 | 
| Conread position: | 376-761 | 
| Cow position: | chr6:51370576-51370969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 171, 44 | 
| Conread position: | 376-780 | 
| Cow position: | chr6:28172691-28173110 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 376-782 | 
| Cow position: | chr6:2089883-2090301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 169, 19 | 
| Conread position: | 376-793 | 
| Cow position: | chr6:1914104-1914520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 298 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 320, 169 | 
| Conread position: | 377-777 | 
| Cow position: | chr6:32287095-32287503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 149 | 
| Conread position: | 377-834 | 
| Cow position: | chr6:14929069-14929532 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 177 | 
| Conread position: | 377-931 | 
| Cow position: | chr6:606738-607313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 287, 175 | 
| Conread position: | 377-932 | 
| Cow position: | chr6:66304363-66303787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 581 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 286, 161 | 
| Conread position: | 378-618 | 
| Cow position: | chr6:55387073-55387318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 249 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 15, 96 | 
| Conread position: | 378-780 | 
| Cow position: | chr6:18418976-18418561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 175 | 
| Conread position: | 378-879 | 
| Cow position: | chr6:58075698-58076231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 183, 0 | 
| Conread position: | 378-1161 | 
| Cow position: | chr6:27852230-27851418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 828 | 
| Alignm identity: | 575 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 116 | 
| Conread position: | 380-537 | 
| Cow position: | chr6:52900506-52900659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 40, 0 | 
| Conread position: | 380-667 | 
| Cow position: | chr6:12629497-12629783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 265, 114 | 
| Conread position: | 380-882 | 
| Cow position: | chr6:63197702-63197161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 546 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 66, 121 | 
| Conread position: | 381-615 | 
| Cow position: | chr6:12389336-12389579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 381-792 | 
| Cow position: | chr6:12977293-12977717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 12, 78 | 
| Conread position: | 382-518 | 
| Cow position: | chr6:21003867-21004004 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 382-658 | 
| Cow position: | chr6:1891379-1891107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 119 | 
| Conread position: | 382-672 | 
| Cow position: | chr6:7835510-7835789 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 51, 55 | 
| Conread position: | 382-762 | 
| Cow position: | chr6:27815980-27815625 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 147, 39 | 
| Conread position: | 382-773 | 
| Cow position: | chr6:61443631-61443221 (view UCSC Genome Browser custom track) | 
| Alignm length: | 411 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 382-780 | 
| Cow position: | chr6:55842692-55842271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 390 | 
| Conread position: | 382-826 | 
| Cow position: | chr6:22507233-22507684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 285, 50 | 
| Conread position: | 383-540 | 
| Cow position: | chr6:1836046-1836203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 383-663 | 
| Cow position: | chr6:59620126-59620402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 24 | 
| Conread position: | 383-690 | 
| Cow position: | chr6:63768383-63768068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 162, 48 | 
| Conread position: | 383-693 | 
| Cow position: | chr6:19443079-19443391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 10, 234 | 
| Conread position: | 383-747 | 
| Cow position: | chr6:46528904-46529268 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 173, 117 | 
| Conread position: | 384-541 | 
| Cow position: | chr6:61268606-61268763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 384-653 | 
| Cow position: | chr6:40169546-40169277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 168 | 
| Conread position: | 384-747 | 
| Cow position: | chr6:59507825-59508206 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 26 | 
| Conread position: | 385-508 | 
| Cow position: | chr6:45952550-45952427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 385-539 | 
| Cow position: | chr6:24557076-24557232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 157 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 385-651 | 
| Cow position: | chr6:47155014-47155276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 11, 44 | 
| Conread position: | 385-680 | 
| Cow position: | chr6:21541557-21541858 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 0 | 
| Conread position: | 385-693 | 
| Cow position: | chr6:26614696-26615018 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 165, 46 | 
| Conread position: | 385-761 | 
| Cow position: | chr6:1734035-1733644 (view UCSC Genome Browser custom track) | 
| Alignm length: | 393 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 207 | 
| Conread position: | 385-766 | 
| Cow position: | chr6:62211229-62211627 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 69, 14 | 
| Conread position: | 385-771 | 
| Cow position: | chr6:28053061-28052661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 9, 46 | 
| Conread position: | 385-776 | 
| Cow position: | chr6:32497451-32497832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 201, 35 | 
| Conread position: | 386-556 | 
| Cow position: | chr6:6190911-6191081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 386-789 | 
| Cow position: | chr6:8145396-8144970 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 170, 31 | 
| Conread position: | 386-1123 | 
| Cow position: | chr6:52478958-52478165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 801 | 
| Alignm identity: | 577 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 33 | 
| Conread position: | 386-1135 | 
| Cow position: | chr6:17414963-17414191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 789 | 
| Alignm identity: | 551 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 274, 66 | 
| Conread position: | 387-505 | 
| Cow position: | chr6:24652803-24652918 (view UCSC Genome Browser custom track) | 
| Alignm length: | 119 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 387-665 | 
| Cow position: | chr6:64815544-64815260 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 160, 209 | 
| Conread position: | 387-675 | 
| Cow position: | chr6:16596624-16596917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 170, 260 | 
| Conread position: | 387-688 | 
| Cow position: | chr6:41707097-41707404 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 167, 0 | 
| Conread position: | 387-779 | 
| Cow position: | chr6:33509071-33509469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 32 | 
| Conread position: | 388-778 | 
| Cow position: | chr6:21857372-21857774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 403 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 276, 0 | 
| Conread position: | 388-780 | 
| Cow position: | chr6:37736556-37736961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 164 | 
| Conread position: | 388-792 | 
| Cow position: | chr6:43999528-43999105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 424 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 388-808 | 
| Cow position: | chr6:17456357-17456790 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 162, 21 | 
| Conread position: | 388-1116 | 
| Cow position: | chr6:33460578-33461345 (view UCSC Genome Browser custom track) | 
| Alignm length: | 775 | 
| Alignm identity: | 527 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 275, 228 | 
| Conread position: | 388-1128 | 
| Cow position: | chr6:16699748-16700506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 786 | 
| Alignm identity: | 563 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 47, 90 | 
| Conread position: | 389-665 | 
| Cow position: | chr6:66169861-66170142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 7, 79 | 
| Conread position: | 389-691 | 
| Cow position: | chr6:14306576-14306883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 19, 40 | 
| Conread position: | 390-691 | 
| Cow position: | chr6:53968980-53968688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 26, 64 | 
| Conread position: | 391-563 | 
| Cow position: | chr6:24713735-24713563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 174 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 154, 161 | 
| Conread position: | 393-557 | 
| Cow position: | chr6:49391619-49391458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 393-582 | 
| Cow position: | chr6:23113222-23113413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 159, 0 | 
| Conread position: | 393-648 | 
| Cow position: | chr6:1077624-1077359 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 393-690 | 
| Cow position: | chr6:21396578-21396281 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 243 | 
| Conread position: | 393-740 | 
| Cow position: | chr6:47532307-47532652 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 30, 21 | 
| Conread position: | 393-782 | 
| Cow position: | chr6:13531305-13531707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 159 | 
| Conread position: | 393-880 | 
| Cow position: | chr6:643102-642562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 541 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 221, 0 | 
| Conread position: | 394-682 | 
| Cow position: | chr6:13717306-13717601 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 166, 74 | 
| Conread position: | 394-823 | 
| Cow position: | chr6:20747149-20747592 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 145, 106 | 
| Conread position: | 395-540 | 
| Cow position: | chr6:29833597-29833452 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 395-563 | 
| Cow position: | chr6:34386773-34386941 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 150, 157 | 
| Conread position: | 395-682 | 
| Cow position: | chr6:44949790-44949497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 129, 28 | 
| Conread position: | 395-693 | 
| Cow position: | chr6:34405342-34405039 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 133, 103 | 
| Conread position: | 395-779 | 
| Cow position: | chr6:41556966-41557363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 47 | 
| Conread position: | 395-819 | 
| Cow position: | chr6:36918679-36918237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 167, 231 | 
| Conread position: | 395-1015 | 
| Cow position: | chr6:28791321-28791969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 654 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 257 | 
| Conread position: | 396-662 | 
| Cow position: | chr6:52240046-52239774 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 156, 30 | 
| Conread position: | 397-780 | 
| Cow position: | chr6:45751578-45751974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 155 | 
| Conread position: | 398-663 | 
| Cow position: | chr6:6163742-6164005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 154, 22 | 
| Conread position: | 398-761 | 
| Cow position: | chr6:12506080-12505709 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 160, 42 | 
| Conread position: | 398-761 | 
| Cow position: | chr6:15991302-15990932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 150, 100 | 
| Conread position: | 398-780 | 
| Cow position: | chr6:41470563-41470958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 154 | 
| Conread position: | 399-647 | 
| Cow position: | chr6:39848552-39848808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 399-761 | 
| Cow position: | chr6:67243120-67242748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 149, 108 | 
| Conread position: | 399-767 | 
| Cow position: | chr6:60516227-60516606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 270, 155 | 
| Conread position: | 399-782 | 
| Cow position: | chr6:56080270-56079876 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 154 | 
| Conread position: | 399-782 | 
| Cow position: | chr6:63177767-63178163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 153 | 
| Conread position: | 399-891 | 
| Cow position: | chr6:66431351-66431835 (view UCSC Genome Browser custom track) | 
| Alignm length: | 508 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 264, 54 | 
| Conread position: | 400-643 | 
| Cow position: | chr6:33470759-33471009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 400-782 | 
| Cow position: | chr6:18503166-18502771 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 153 | 
| Conread position: | 401-651 | 
| Cow position: | chr6:1510071-1510325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 120 | 
| Conread position: | 401-663 | 
| Cow position: | chr6:23532098-23532363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 98, 18 | 
| Conread position: | 401-679 | 
| Cow position: | chr6:16103748-16103470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 18 | 
| Conread position: | 401-680 | 
| Cow position: | chr6:44375389-44375675 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 165, 55 | 
| Conread position: | 401-683 | 
| Cow position: | chr6:42727018-42726731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 9 | 
| Conread position: | 401-1028 | 
| Cow position: | chr6:14696872-14696215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 473 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 237, 159 | 
| Conread position: | 402-541 | 
| Cow position: | chr6:51049097-51049234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 140 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 402-678 | 
| Cow position: | chr6:52189350-52189067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 147, 193 | 
| Conread position: | 402-771 | 
| Cow position: | chr6:4824462-4824843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 261 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 28, 18 | 
| Conread position: | 403-571 | 
| Cow position: | chr6:39109727-39109558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 27, 23 | 
| Conread position: | 403-693 | 
| Cow position: | chr6:58707846-58707537 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 403-742 | 
| Cow position: | chr6:6817256-6817604 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 132, 97 | 
| Conread position: | 404-663 | 
| Cow position: | chr6:66873833-66874089 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 404-797 | 
| Cow position: | chr6:12963953-12964353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 45, 136 | 
| Conread position: | 405-782 | 
| Cow position: | chr6:14198300-14198687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 99 | 
| Conread position: | 407-674 | 
| Cow position: | chr6:38896367-38896101 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 156 | 
| Conread position: | 407-678 | 
| Cow position: | chr6:610912-611191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 140, 74 | 
| Conread position: | 407-761 | 
| Cow position: | chr6:60781953-60781580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 58 | 
| Conread position: | 408-693 | 
| Cow position: | chr6:6120780-6120508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 22, 18 | 
| Conread position: | 411-512 | 
| Cow position: | chr6:20379901-20380002 (view UCSC Genome Browser custom track) | 
| Alignm length: | 102 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 411-604 | 
| Cow position: | chr6:20410678-20410492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 67, 0 | 
| Conread position: | 411-639 | 
| Cow position: | chr6:14289863-14289630 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 151, 83 | 
| Conread position: | 411-643 | 
| Cow position: | chr6:59277693-59277454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 117, 0 | 
| Conread position: | 411-665 | 
| Cow position: | chr6:35238508-35238253 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 7, 11 | 
| Conread position: | 411-680 | 
| Cow position: | chr6:41677620-41677896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 143, 23 | 
| Conread position: | 411-761 | 
| Cow position: | chr6:31654605-31654245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 122, 82 | 
| Conread position: | 411-761 | 
| Cow position: | chr6:60891140-60890773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 159, 191 | 
| Conread position: | 411-771 | 
| Cow position: | chr6:33865583-33865216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 82 | 
| Conread position: | 411-777 | 
| Cow position: | chr6:51296691-51296331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 254, 167 | 
| Conread position: | 411-782 | 
| Cow position: | chr6:25410115-25410499 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 141 | 
| Conread position: | 411-792 | 
| Cow position: | chr6:39416839-39417236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 134, 95 | 
| Conread position: | 411-819 | 
| Cow position: | chr6:16518370-16517921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 411-820 | 
| Cow position: | chr6:16251700-16252112 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 149, 29 | 
| Conread position: | 411-890 | 
| Cow position: | chr6:17932585-17933098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 517 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 89, 405 | 
| Conread position: | 412-693 | 
| Cow position: | chr6:10706398-10706113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 34 | 
| Conread position: | 412-793 | 
| Cow position: | chr6:35274962-35274564 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 136, 8 | 
| Conread position: | 414-693 | 
| Cow position: | chr6:15310351-15310069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 253, 0 | 
| Conread position: | 414-830 | 
| Cow position: | chr6:22216069-22215656 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 222 | 
| Conread position: | 415-678 | 
| Cow position: | chr6:18142644-18142897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 264 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 0 | 
| Conread position: | 415-933 | 
| Cow position: | chr6:5958498-5957974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 540 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 64 | 
| Conread position: | 416-513 | 
| Cow position: | chr6:37597405-37597502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 98 | 
| Alignm identity: | 86 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 416-671 | 
| Cow position: | chr6:32335092-32335362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 416-744 | 
| Cow position: | chr6:58370081-58370430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 0 | 
| Conread position: | 416-776 | 
| Cow position: | chr6:59077048-59076685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 129, 137 | 
| Conread position: | 416-782 | 
| Cow position: | chr6:19819108-19819487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 248, 0 | 
| Conread position: | 416-947 | 
| Cow position: | chr6:36928165-36928730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 567 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 410 | 
| Conread position: | 417-651 | 
| Cow position: | chr6:59687269-59687496 (view UCSC Genome Browser custom track) | 
| Alignm length: | 237 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 134, 81 | 
| Conread position: | 417-657 | 
| Cow position: | chr6:37515323-37515569 (view UCSC Genome Browser custom track) | 
| Alignm length: | 253 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 87, 9 | 
| Conread position: | 417-785 | 
| Cow position: | chr6:41152181-41152541 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 246, 9 | 
| Conread position: | 417-860 | 
| Cow position: | chr6:1784250-1783797 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 278, 242 | 
| Conread position: | 418-793 | 
| Cow position: | chr6:18977127-18977526 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 63, 119 | 
| Conread position: | 419-793 | 
| Cow position: | chr6:60673066-60673448 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 90 | 
| Conread position: | 419-803 | 
| Cow position: | chr6:5866876-5866462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 415 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 123, 0 | 
| Conread position: | 419-813 | 
| Cow position: | chr6:45155640-45156040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 123 | 
| Conread position: | 420-665 | 
| Cow position: | chr6:22995461-22995213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 137, 44 | 
| Conread position: | 420-690 | 
| Cow position: | chr6:61136684-61136956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 52, 0 | 
| Conread position: | 420-752 | 
| Cow position: | chr6:62015164-62015506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 168 | 
| Conread position: | 420-777 | 
| Cow position: | chr6:5851906-5851542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 373 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 108 | 
| Conread position: | 420-782 | 
| Cow position: | chr6:45591813-45592192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 132 | 
| Conread position: | 420-839 | 
| Cow position: | chr6:67544774-67544339 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 249, 0 | 
| Conread position: | 420-1112 | 
| Cow position: | chr6:36471049-36470343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 724 | 
| Alignm identity: | 522 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 54 | 
| Conread position: | 420-1116 | 
| Cow position: | chr6:65711345-65712058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 728 | 
| Alignm identity: | 508 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 243, 429 | 
| Conread position: | 421-777 | 
| Cow position: | chr6:28558956-28559302 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 293, 189 | 
| Conread position: | 421-790 | 
| Cow position: | chr6:11704712-11705094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 130, 56 | 
| Conread position: | 421-794 | 
| Cow position: | chr6:20689803-20689424 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 246, 146 | 
| Conread position: | 422-541 | 
| Cow position: | chr6:67969442-67969323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 422-548 | 
| Cow position: | chr6:61605726-61605852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 422-663 | 
| Cow position: | chr6:46251444-46251200 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 35, 16 | 
| Conread position: | 422-663 | 
| Cow position: | chr6:47640980-47640736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 87 | 
| Conread position: | 422-773 | 
| Cow position: | chr6:13945527-13945897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 36, 136 | 
| Conread position: | 422-1124 | 
| Cow position: | chr6:53178157-53178873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 732 | 
| Alignm identity: | 524 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 70, 480 | 
| Conread position: | 423-605 | 
| Cow position: | chr6:36892383-36892565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 423-780 | 
| Cow position: | chr6:55720839-55721209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 372 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 122, 129 | 
| Conread position: | 424-692 | 
| Cow position: | chr6:46246573-46246312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 0 | 
| Conread position: | 424-1137 | 
| Cow position: | chr6:64431469-64432194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 741 | 
| Alignm identity: | 538 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 271, 153 | 
| Conread position: | 425-662 | 
| Cow position: | chr6:53918205-53917968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 425-785 | 
| Cow position: | chr6:41215911-41216289 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 32, 171 | 
| Conread position: | 426-663 | 
| Cow position: | chr6:23366249-23366012 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 130, 39 | 
| Conread position: | 426-761 | 
| Cow position: | chr6:48107557-48107900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 126, 35 | 
| Conread position: | 426-779 | 
| Cow position: | chr6:55361630-55361996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 126 | 
| Conread position: | 426-880 | 
| Cow position: | chr6:61575117-61575612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 68 | 
| Conread position: | 428-819 | 
| Cow position: | chr6:52627136-52627547 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 127, 146 | 
| Conread position: | 429-550 | 
| Cow position: | chr6:5610130-5610009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 122 | 
| Alignm identity: | 103 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 429-693 | 
| Cow position: | chr6:12648052-12648328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 69, 156 | 
| Conread position: | 429-693 | 
| Cow position: | chr6:50755550-50755817 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 123 | 
| Conread position: | 429-776 | 
| Cow position: | chr6:21694238-21694585 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 155, 76 | 
| Conread position: | 429-782 | 
| Cow position: | chr6:18649236-18648871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 86 | 
| Conread position: | 429-782 | 
| Cow position: | chr6:65863001-65863367 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 235, 0 | 
| Conread position: | 429-814 | 
| Cow position: | chr6:48946843-48946439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 119, 110 | 
| Conread position: | 429-888 | 
| Cow position: | chr6:65871441-65871902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 7 | 
| Conread position: | 429-929 | 
| Cow position: | chr6:3979135-3978612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 291 | 
| Conread position: | 429-1001 | 
| Cow position: | chr6:28811472-28810875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 610 | 
| Alignm identity: | 410 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 130, 23 | 
| Conread position: | 429-1116 | 
| Cow position: | chr6:1770666-1769955 (view UCSC Genome Browser custom track) | 
| Alignm length: | 721 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 234, 46 | 
| Conread position: | 430-1127 | 
| Cow position: | chr6:32867677-32866971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 727 | 
| Alignm identity: | 518 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 239, 64 | 
| Conread position: | 431-680 | 
| Cow position: | chr6:1561634-1561883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 120, 82 | 
| Conread position: | 431-693 | 
| Cow position: | chr6:37735307-37735579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 61, 200 | 
| Conread position: | 431-737 | 
| Cow position: | chr6:31256615-31256932 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 116, 64 | 
| Conread position: | 432-614 | 
| Cow position: | chr6:58172616-58172798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 97, 20 | 
| Conread position: | 432-642 | 
| Cow position: | chr6:57777537-57777327 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 138, 42 | 
| Conread position: | 432-682 | 
| Cow position: | chr6:40323642-40323892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 257 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 123, 201 | 
| Conread position: | 432-884 | 
| Cow position: | chr6:44098618-44099095 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 263, 0 | 
| Conread position: | 433-789 | 
| Cow position: | chr6:35132691-35133065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 433-809 | 
| Cow position: | chr6:4156013-4155609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 407 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 127, 11 | 
| Conread position: | 433-1137 | 
| Cow position: | chr6:13688280-13687558 (view UCSC Genome Browser custom track) | 
| Alignm length: | 741 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 155, 67 | 
| Conread position: | 434-541 | 
| Cow position: | chr6:40511557-40511450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 108 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 434-570 | 
| Cow position: | chr6:44216911-44217046 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 133, 0 | 
| Conread position: | 434-678 | 
| Cow position: | chr6:2324681-2324417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 267 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 24, 170 | 
| Conread position: | 434-732 | 
| Cow position: | chr6:18905041-18904732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 7, 84 | 
| Conread position: | 434-738 | 
| Cow position: | chr6:53100568-53100891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 40, 164 | 
| Conread position: | 434-782 | 
| Cow position: | chr6:9226200-9226559 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 111, 118 | 
| Conread position: | 434-782 | 
| Cow position: | chr6:31568166-31567806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 111, 100 | 
| Conread position: | 435-662 | 
| Cow position: | chr6:9469194-9469436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 121, 0 | 
| Conread position: | 435-693 | 
| Cow position: | chr6:51467996-51468254 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 249 | 
| Conread position: | 435-824 | 
| Cow position: | chr6:32427782-32428171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 148 | 
| Conread position: | 436-571 | 
| Cow position: | chr6:11907643-11907777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 131, 0 | 
| Conread position: | 436-760 | 
| Cow position: | chr6:55573578-55573238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 109, 39 | 
| Conread position: | 436-885 | 
| Cow position: | chr6:22877616-22877150 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 227, 87 | 
| Conread position: | 436-1102 | 
| Cow position: | chr6:51834938-51835623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 695 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 227, 27 | 
| Conread position: | 437-779 | 
| Cow position: | chr6:39096350-39095996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 24, 45 | 
| Conread position: | 437-933 | 
| Cow position: | chr6:23987204-23986691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 362 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 134, 338 | 
| Conread position: | 438-663 | 
| Cow position: | chr6:56376854-56376621 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 60, 0 | 
| Conread position: | 438-777 | 
| Cow position: | chr6:66751422-66751775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 208, 56 | 
| Conread position: | 438-819 | 
| Cow position: | chr6:7253902-7253486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 105 | 
| Conread position: | 439-579 | 
| Cow position: | chr6:11108730-11108873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 53, 0 | 
| Conread position: | 439-793 | 
| Cow position: | chr6:39301284-39300920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 66, 8 | 
| Conread position: | 439-1015 | 
| Cow position: | chr6:43188430-43189032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 609 | 
| Alignm identity: | 418 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 113 | 
| Conread position: | 440-573 | 
| Cow position: | chr6:36201392-36201525 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 38, 74 | 
| Conread position: | 440-623 | 
| Cow position: | chr6:47923767-47923576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 440-693 | 
| Cow position: | chr6:38454931-38454676 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 102, 204 | 
| Conread position: | 440-870 | 
| Cow position: | chr6:58439530-58439954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 144 | 
| Conread position: | 441-665 | 
| Cow position: | chr6:23248569-23248343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 441-690 | 
| Cow position: | chr6:50571857-50572109 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 111 | 
| Conread position: | 442-881 | 
| Cow position: | chr6:32916377-32915919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 355 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 221, 6 | 
| Conread position: | 442-1116 | 
| Cow position: | chr6:13366839-13367521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 703 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 153, 97 | 
| Conread position: | 443-615 | 
| Cow position: | chr6:2833521-2833357 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 443-691 | 
| Cow position: | chr6:40238541-40238286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 443-771 | 
| Cow position: | chr6:9375820-9375494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 220, 70 | 
| Conread position: | 443-1116 | 
| Cow position: | chr6:143817-143139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 696 | 
| Alignm identity: | 453 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 135, 34 | 
| Conread position: | 444-633 | 
| Cow position: | chr6:31829591-31829783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 101, 50 | 
| Conread position: | 444-655 | 
| Cow position: | chr6:66453043-66453261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 444-785 | 
| Cow position: | chr6:18955491-18955139 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 444-873 | 
| Cow position: | chr6:10605226-10605684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 460 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 411 | 
| Conread position: | 444-885 | 
| Cow position: | chr6:44372406-44371938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 197 | 
| Conread position: | 445-656 | 
| Cow position: | chr6:28107456-28107243 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 105, 25 | 
| Conread position: | 445-1057 | 
| Cow position: | chr6:36651967-36652602 (view UCSC Genome Browser custom track) | 
| Alignm length: | 643 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 199 | 
| Conread position: | 445-1112 | 
| Cow position: | chr6:24030918-24031598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 704 | 
| Alignm identity: | 492 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 138, 155 | 
| Conread position: | 445-1116 | 
| Cow position: | chr6:7131304-7130622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 703 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 269, 156 | 
| Conread position: | 446-766 | 
| Cow position: | chr6:62828605-62828283 (view UCSC Genome Browser custom track) | 
| Alignm length: | 329 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 101, 24 | 
| Conread position: | 446-773 | 
| Cow position: | chr6:2668764-2668425 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 218, 0 | 
| Conread position: | 446-782 | 
| Cow position: | chr6:10865634-10865983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 106 | 
| Conread position: | 447-692 | 
| Cow position: | chr6:30152561-30152801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 107, 47 | 
| Conread position: | 448-640 | 
| Cow position: | chr6:68365727-68365536 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 448-671 | 
| Cow position: | chr6:24659404-24659184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 55, 193 | 
| Conread position: | 448-682 | 
| Cow position: | chr6:30826513-30826271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 11, 38 | 
| Conread position: | 448-776 | 
| Cow position: | chr6:19170830-19171170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 44, 0 | 
| Conread position: | 448-779 | 
| Cow position: | chr6:12515697-12516033 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 117, 91 | 
| Conread position: | 448-1022 | 
| Cow position: | chr6:18049481-18048883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 428 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 455 | 
| Conread position: | 449-780 | 
| Cow position: | chr6:46681356-46681695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 224, 328 | 
| Conread position: | 449-782 | 
| Cow position: | chr6:67818653-67818307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 254 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 215, 0 | 
| Conread position: | 449-880 | 
| Cow position: | chr6:48169492-48169948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 214, 318 | 
| Conread position: | 450-657 | 
| Cow position: | chr6:60485236-60485432 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 157, 92 | 
| Conread position: | 450-682 | 
| Cow position: | chr6:67304329-67304557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 0 | 
| Conread position: | 451-782 | 
| Cow position: | chr6:25095573-25095917 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 101 | 
| Conread position: | 452-740 | 
| Cow position: | chr6:119515-119827 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 66, 41 | 
| Conread position: | 453-807 | 
| Cow position: | chr6:14932175-14931796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 453-1023 | 
| Cow position: | chr6:37634348-37634940 (view UCSC Genome Browser custom track) | 
| Alignm length: | 602 | 
| Alignm identity: | 426 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 210, 54 | 
| Conread position: | 454-707 | 
| Cow position: | chr6:7302464-7302716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 255 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 91, 74 | 
| Conread position: | 455-658 | 
| Cow position: | chr6:61842511-61842731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 455-680 | 
| Cow position: | chr6:26344396-26344620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 90, 101 | 
| Conread position: | 455-693 | 
| Cow position: | chr6:3758845-3759086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 90, 118 | 
| Conread position: | 455-693 | 
| Cow position: | chr6:54979212-54979453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 97 | 
| Conread position: | 455-782 | 
| Cow position: | chr6:64097098-64096758 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 90, 98 | 
| Conread position: | 457-761 | 
| Cow position: | chr6:26011050-26010748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 97, 28 | 
| Conread position: | 457-780 | 
| Cow position: | chr6:17935473-17935135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 340 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 28, 98 | 
| Conread position: | 458-752 | 
| Cow position: | chr6:56651963-56651659 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 229 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 96 | 
| Conread position: | 458-766 | 
| Cow position: | chr6:45661037-45661344 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 106, 25 | 
| Conread position: | 458-777 | 
| Cow position: | chr6:66566013-66566343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 209, 54 | 
| Conread position: | 459-784 | 
| Cow position: | chr6:48422108-48421766 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 101, 0 | 
| Conread position: | 461-662 | 
| Cow position: | chr6:60166792-60166586 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 92, 133 | 
| Conread position: | 461-776 | 
| Cow position: | chr6:29284248-29284581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 94, 156 | 
| Conread position: | 461-777 | 
| Cow position: | chr6:8599347-8599679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 142, 0 | 
| Conread position: | 461-782 | 
| Cow position: | chr6:24262826-24263160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 84, 91 | 
| Conread position: | 461-1112 | 
| Cow position: | chr6:49422189-49421561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 439 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 159, 126 | 
| Conread position: | 461-1116 | 
| Cow position: | chr6:29210059-29210716 (view UCSC Genome Browser custom track) | 
| Alignm length: | 684 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 58, 345 | 
| Conread position: | 462-682 | 
| Cow position: | chr6:53140834-53140612 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 123, 183 | 
| Conread position: | 462-693 | 
| Cow position: | chr6:51968723-51968958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 127, 85 | 
| Conread position: | 462-750 | 
| Cow position: | chr6:20245644-20245943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 0 | 
| Conread position: | 462-782 | 
| Cow position: | chr6:60066033-60066366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 334 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 0 | 
| Conread position: | 462-819 | 
| Cow position: | chr6:1174941-1174562 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 291 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 211, 0 | 
| Conread position: | 462-819 | 
| Cow position: | chr6:33895694-33895334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 94, 40 | 
| Conread position: | 463-688 | 
| Cow position: | chr6:19695103-19695331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 0 | 
| Conread position: | 463-782 | 
| Cow position: | chr6:12947791-12947461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 201, 104 | 
| Conread position: | 463-782 | 
| Cow position: | chr6:47674685-47675015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 31 | 
| Conread position: | 463-790 | 
| Cow position: | chr6:47773662-47773313 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 463-971 | 
| Cow position: | chr6:24961728-24962238 (view UCSC Genome Browser custom track) | 
| Alignm length: | 529 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 90 | 
| Conread position: | 463-1002 | 
| Cow position: | chr6:58747772-58748342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 574 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 204, 173 | 
| Conread position: | 463-1109 | 
| Cow position: | chr6:38770864-38771503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 667 | 
| Alignm identity: | 457 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 127 | 
| Conread position: | 464-782 | 
| Cow position: | chr6:52424583-52424914 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 0 | 
| Conread position: | 464-823 | 
| Cow position: | chr6:6944123-6943739 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 51, 143 | 
| Conread position: | 465-782 | 
| Cow position: | chr6:45694574-45694904 (view UCSC Genome Browser custom track) | 
| Alignm length: | 332 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 87 | 
| Conread position: | 465-988 | 
| Cow position: | chr6:44578831-44578291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 546 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 447 | 
| Conread position: | 466-779 | 
| Cow position: | chr6:16659456-16659775 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 111, 178 | 
| Conread position: | 466-779 | 
| Cow position: | chr6:38994083-38993751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 35, 0 | 
| Conread position: | 466-782 | 
| Cow position: | chr6:46224971-46224642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 198, 0 | 
| Conread position: | 466-782 | 
| Cow position: | chr6:54202330-54202001 (view UCSC Genome Browser custom track) | 
| Alignm length: | 330 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 0 | 
| Conread position: | 466-813 | 
| Cow position: | chr6:49626919-49627287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 370 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 197, 101 | 
| Conread position: | 466-1128 | 
| Cow position: | chr6:32269288-32268640 (view UCSC Genome Browser custom track) | 
| Alignm length: | 682 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 33 | 
| Conread position: | 467-637 | 
| Cow position: | chr6:28977484-28977312 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 467-710 | 
| Cow position: | chr6:19429026-19429279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 166 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 468-826 | 
| Cow position: | chr6:60017640-60018009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 205, 36 | 
| Conread position: | 469-626 | 
| Cow position: | chr6:15702884-15702728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 160 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 94, 72 | 
| Conread position: | 469-761 | 
| Cow position: | chr6:33177026-33176732 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 197, 72 | 
| Conread position: | 469-782 | 
| Cow position: | chr6:49684999-49684673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 84 | 
| Conread position: | 470-682 | 
| Cow position: | chr6:66433487-66433699 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 193, 93 | 
| Conread position: | 472-782 | 
| Cow position: | chr6:33863326-33863649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 73, 80 | 
| Conread position: | 472-826 | 
| Cow position: | chr6:13694019-13693641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 79, 179 | 
| Conread position: | 472-830 | 
| Cow position: | chr6:10649451-10649077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 17 | 
| Conread position: | 474-767 | 
| Cow position: | chr6:47848133-47847825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 311 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 78, 20 | 
| Conread position: | 476-933 | 
| Cow position: | chr6:46205594-46206067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 191, 15 | 
| Conread position: | 478-663 | 
| Cow position: | chr6:6100150-6099966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 478-884 | 
| Cow position: | chr6:31636118-31635685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 258 | 
| Conread position: | 479-613 | 
| Cow position: | chr6:52026236-52026100 (view UCSC Genome Browser custom track) | 
| Alignm length: | 138 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 30, 123 | 
| Conread position: | 481-666 | 
| Cow position: | chr6:39995528-39995347 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 49, 80 | 
| Conread position: | 483-1110 | 
| Cow position: | chr6:65870608-65871264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 456 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 182, 11 | 
| Conread position: | 483-1112 | 
| Cow position: | chr6:24781988-24781316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 680 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 79, 440 | 
| Conread position: | 484-690 | 
| Cow position: | chr6:64039693-64039910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 58, 14 | 
| Conread position: | 485-672 | 
| Cow position: | chr6:23891125-23891318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 485-682 | 
| Cow position: | chr6:24988396-24988202 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 485-780 | 
| Cow position: | chr6:6578191-6577883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 310 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 68 | 
| Conread position: | 485-792 | 
| Cow position: | chr6:53448630-53448952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 84, 308 | 
| Conread position: | 486-642 | 
| Cow position: | chr6:42731937-42731781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 59, 67 | 
| Conread position: | 486-662 | 
| Cow position: | chr6:56885545-56885721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 141 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 59, 66 | 
| Conread position: | 486-772 | 
| Cow position: | chr6:35180758-35180454 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 68, 108 | 
| Conread position: | 486-790 | 
| Cow position: | chr6:64895666-64895986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 70, 140 | 
| Conread position: | 487-711 | 
| Cow position: | chr6:40774785-40774557 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 11, 39 | 
| Conread position: | 490-636 | 
| Cow position: | chr6:15944112-15943960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 490-782 | 
| Cow position: | chr6:1910905-1911211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 17, 63 | 
| Conread position: | 490-782 | 
| Cow position: | chr6:3157634-3157333 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 55, 14 | 
| Conread position: | 490-943 | 
| Cow position: | chr6:62925412-62924935 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 127 | 
| Conread position: | 491-647 | 
| Cow position: | chr6:39375212-39375373 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 81, 0 | 
| Conread position: | 491-663 | 
| Cow position: | chr6:46866199-46866032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 491-675 | 
| Cow position: | chr6:49694028-49694208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 174, 86 | 
| Conread position: | 491-682 | 
| Cow position: | chr6:31739133-31739328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 491-682 | 
| Cow position: | chr6:43788927-43788740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 176, 33 | 
| Conread position: | 491-692 | 
| Cow position: | chr6:28636439-28636235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 54, 68 | 
| Conread position: | 491-777 | 
| Cow position: | chr6:2110525-2110229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 176, 151 | 
| Conread position: | 491-777 | 
| Cow position: | chr6:27942624-27942922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 64, 19 | 
| Conread position: | 491-782 | 
| Cow position: | chr6:757961-758266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 491-782 | 
| Cow position: | chr6:24237612-24237310 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 54, 27 | 
| Conread position: | 491-782 | 
| Cow position: | chr6:31192738-31192433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 218 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 54, 62 | 
| Conread position: | 491-782 | 
| Cow position: | chr6:51150635-51150937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 303 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 491-809 | 
| Cow position: | chr6:44906067-44906418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 14, 105 | 
| Conread position: | 491-809 | 
| Cow position: | chr6:55205851-55205521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 61, 13 | 
| Conread position: | 491-813 | 
| Cow position: | chr6:5276078-5275740 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 54, 98 | 
| Conread position: | 491-831 | 
| Cow position: | chr6:31081639-31081990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 77 | 
| Conread position: | 491-906 | 
| Cow position: | chr6:3017026-3017472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 64, 347 | 
| Conread position: | 491-1116 | 
| Cow position: | chr6:32125656-32126291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 652 | 
| Alignm identity: | 458 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 176, 312 | 
| Conread position: | 491-1137 | 
| Cow position: | chr6:19401458-19402106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 676 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 8 | 
| Conread position: | 491-1141 | 
| Cow position: | chr6:444917-445591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 688 | 
| Alignm identity: | 477 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 34 | 
| Conread position: | 492-1029 | 
| Cow position: | chr6:35103731-35103177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 560 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 200, 13 | 
| Conread position: | 494-657 | 
| Cow position: | chr6:8542696-8542863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 66, 119 | 
| Conread position: | 494-663 | 
| Cow position: | chr6:240463-240635 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 66, 0 | 
| Conread position: | 494-663 | 
| Cow position: | chr6:51581803-51581632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 494-682 | 
| Cow position: | chr6:49685152-49685338 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 10, 0 | 
| Conread position: | 494-689 | 
| Cow position: | chr6:457890-457692 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 142, 119 | 
| Conread position: | 494-722 | 
| Cow position: | chr6:55345284-55345051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 57, 16 | 
| Conread position: | 494-777 | 
| Cow position: | chr6:62323440-62323146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 170, 0 | 
| Conread position: | 494-782 | 
| Cow position: | chr6:5751574-5751873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 51, 58 | 
| Conread position: | 494-782 | 
| Cow position: | chr6:19843015-19843316 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 170, 0 | 
| Conread position: | 494-785 | 
| Cow position: | chr6:40912808-40912507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 302 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 169, 0 | 
| Conread position: | 494-820 | 
| Cow position: | chr6:23003816-23003474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 60, 148 | 
| Conread position: | 494-881 | 
| Cow position: | chr6:24327549-24327137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 234 | 
| Conread position: | 494-932 | 
| Cow position: | chr6:17090178-17090653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 479 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 195 | 
| Conread position: | 494-1116 | 
| Cow position: | chr6:66363653-66362993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 459 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 74, 433 | 
| Conread position: | 495-787 | 
| Cow position: | chr6:34842966-34842661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 0 | 
| Conread position: | 495-803 | 
| Cow position: | chr6:52216162-52215843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 264 | 
| Conread position: | 495-803 | 
| Cow position: | chr6:52235653-52235334 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 264 | 
| Conread position: | 496-753 | 
| Cow position: | chr6:21732517-21732247 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 496-877 | 
| Cow position: | chr6:41824234-41823821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 307 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 0 | 
| Conread position: | 496-1111 | 
| Cow position: | chr6:49399023-49398395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 646 | 
| Alignm identity: | 438 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 131, 331 | 
| Conread position: | 498-663 | 
| Cow position: | chr6:30473876-30474047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 498-743 | 
| Cow position: | chr6:62979652-62979394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 53, 177 | 
| Conread position: | 498-811 | 
| Cow position: | chr6:37331558-37331890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 53, 44 | 
| Conread position: | 498-1135 | 
| Cow position: | chr6:9009003-9008362 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 449 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 34 | 
| Conread position: | 501-779 | 
| Cow position: | chr6:48290546-48290832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 44, 52 | 
| Conread position: | 501-782 | 
| Cow position: | chr6:23426792-23427086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 163, 0 | 
| Conread position: | 501-782 | 
| Cow position: | chr6:68340200-68339906 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 163, 0 | 
| Conread position: | 501-1112 | 
| Cow position: | chr6:56849595-56850252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 448 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 339 | 
| Conread position: | 502-693 | 
| Cow position: | chr6:5367085-5366891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 162, 0 | 
| Conread position: | 502-771 | 
| Cow position: | chr6:20056226-20056508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 52, 97 | 
| Conread position: | 502-777 | 
| Cow position: | chr6:14690555-14690839 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 165, 65 | 
| Conread position: | 502-782 | 
| Cow position: | chr6:14225593-14225300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 162, 0 | 
| Conread position: | 503-693 | 
| Cow position: | chr6:7111989-7111798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 85, 145 | 
| Conread position: | 503-932 | 
| Cow position: | chr6:24652579-24652141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 172 | 
| Conread position: | 504-693 | 
| Cow position: | chr6:1293663-1293470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 159, 138 | 
| Conread position: | 504-800 | 
| Cow position: | chr6:1866283-1866590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 262 | 
| Conread position: | 504-1112 | 
| Cow position: | chr6:67430287-67429632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 657 | 
| Alignm identity: | 422 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 161, 463 | 
| Conread position: | 504-1116 | 
| Cow position: | chr6:21004256-21004919 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 486 | 
| Conread position: | 505-680 | 
| Cow position: | chr6:30159440-30159622 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 49, 0 | 
| Conread position: | 505-693 | 
| Cow position: | chr6:31927653-31927841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 164, 128 | 
| Conread position: | 505-782 | 
| Cow position: | chr6:17364757-17364468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 40, 48 | 
| Conread position: | 505-782 | 
| Cow position: | chr6:46371841-46371553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 159, 99 | 
| Conread position: | 505-900 | 
| Cow position: | chr6:31879764-31879364 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 52, 28 | 
| Conread position: | 505-1002 | 
| Cow position: | chr6:23117797-23117271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 528 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 5, 406 | 
| Conread position: | 506-748 | 
| Cow position: | chr6:37597968-37598215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 63 | 
| Conread position: | 506-1128 | 
| Cow position: | chr6:33302015-33302648 (view UCSC Genome Browser custom track) | 
| Alignm length: | 655 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 158, 136 | 
| Conread position: | 507-780 | 
| Cow position: | chr6:11721173-11720887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 0 | 
| Conread position: | 507-782 | 
| Cow position: | chr6:21719173-21718887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 38, 46 | 
| Conread position: | 508-663 | 
| Cow position: | chr6:68322263-68322103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 44, 128 | 
| Conread position: | 508-780 | 
| Cow position: | chr6:4948548-4948833 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 159, 0 | 
| Conread position: | 508-915 | 
| Cow position: | chr6:19427050-19427492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 43, 0 | 
| Conread position: | 509-777 | 
| Cow position: | chr6:32854652-32854382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 53, 25 | 
| Conread position: | 509-782 | 
| Cow position: | chr6:126351-126065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 288 | 
| Alignm identity: | 211 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 36, 44 | 
| Conread position: | 509-782 | 
| Cow position: | chr6:37389066-37389352 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 155, 0 | 
| Conread position: | 509-792 | 
| Cow position: | chr6:68272514-68272224 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 154, 102 | 
| Conread position: | 510-782 | 
| Cow position: | chr6:27401474-27401191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 154, 221 | 
| Conread position: | 511-631 | 
| Cow position: | chr6:25072120-25072239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 121 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 511-777 | 
| Cow position: | chr6:64304015-64303761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 199, 126 | 
| Conread position: | 511-780 | 
| Cow position: | chr6:58031732-58032011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 184, 0 | 
| Conread position: | 511-782 | 
| Cow position: | chr6:11034498-11034214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 286 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 34, 48 | 
| Conread position: | 511-898 | 
| Cow position: | chr6:59597266-59597665 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 152, 297 | 
| Conread position: | 512-679 | 
| Cow position: | chr6:10253831-10253996 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 512-1066 | 
| Cow position: | chr6:55688661-55689214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 393 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 157, 47 | 
| Conread position: | 512-1126 | 
| Cow position: | chr6:45690999-45690370 (view UCSC Genome Browser custom track) | 
| Alignm length: | 660 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 333 | 
| Conread position: | 513-692 | 
| Cow position: | chr6:33855428-33855607 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 513-693 | 
| Cow position: | chr6:26915994-26916177 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 513-782 | 
| Cow position: | chr6:9741926-9742208 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 513-1126 | 
| Cow position: | chr6:6060946-6060323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 636 | 
| Alignm identity: | 445 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 150, 295 | 
| Conread position: | 514-663 | 
| Cow position: | chr6:31048937-31048788 (view UCSC Genome Browser custom track) | 
| Alignm length: | 151 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 73, 53 | 
| Conread position: | 514-680 | 
| Cow position: | chr6:16288844-16288679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 73, 53 | 
| Conread position: | 514-779 | 
| Cow position: | chr6:8207735-8207458 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 31, 39 | 
| Conread position: | 514-782 | 
| Cow position: | chr6:17352241-17351960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 31, 39 | 
| Conread position: | 514-1060 | 
| Cow position: | chr6:24004153-24004720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 41, 232 | 
| Conread position: | 515-699 | 
| Cow position: | chr6:20170753-20170943 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 50, 0 | 
| Conread position: | 515-711 | 
| Cow position: | chr6:46860585-46860388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 160, 0 | 
| Conread position: | 515-780 | 
| Cow position: | chr6:53052342-53052620 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 203 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 30, 37 | 
| Conread position: | 515-782 | 
| Cow position: | chr6:65041219-65040939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 30, 38 | 
| Conread position: | 515-803 | 
| Cow position: | chr6:11789009-11789322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 39, 305 | 
| Conread position: | 515-809 | 
| Cow position: | chr6:37390622-37390947 (view UCSC Genome Browser custom track) | 
| Alignm length: | 326 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 515-819 | 
| Cow position: | chr6:40450388-40450700 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 148, 34 | 
| Conread position: | 515-985 | 
| Cow position: | chr6:6642972-6642501 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 148, 60 | 
| Conread position: | 516-777 | 
| Cow position: | chr6:5944687-5944413 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 151, 0 | 
| Conread position: | 516-782 | 
| Cow position: | chr6:45130308-45130030 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 29, 9 | 
| Conread position: | 516-782 | 
| Cow position: | chr6:62038159-62038434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 178, 150 | 
| Conread position: | 516-902 | 
| Cow position: | chr6:13592337-13592731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 46, 59 | 
| Conread position: | 516-1029 | 
| Cow position: | chr6:16706624-16707163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 544 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 32 | 
| Conread position: | 517-785 | 
| Cow position: | chr6:68252399-68252680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 146, 0 | 
| Conread position: | 518-681 | 
| Cow position: | chr6:32300943-32300777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 27, 35 | 
| Conread position: | 518-792 | 
| Cow position: | chr6:40320311-40320584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 107, 128 | 
| Conread position: | 519-777 | 
| Cow position: | chr6:61257630-61257897 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 26, 34 | 
| Conread position: | 519-782 | 
| Cow position: | chr6:64338005-64337729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 26, 34 | 
| Conread position: | 519-1055 | 
| Cow position: | chr6:25407787-25407215 (view UCSC Genome Browser custom track) | 
| Alignm length: | 580 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 145, 49 | 
| Conread position: | 520-782 | 
| Cow position: | chr6:14631207-14631484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 144, 0 | 
| Conread position: | 521-691 | 
| Cow position: | chr6:64314376-64314201 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 33, 0 | 
| Conread position: | 521-792 | 
| Cow position: | chr6:65874335-65874053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 146, 71 | 
| Conread position: | 521-1054 | 
| Cow position: | chr6:14958723-14958161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 569 | 
| Alignm identity: | 392 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 160, 87 | 
| Conread position: | 522-680 | 
| Cow position: | chr6:14897138-14896983 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 522-1015 | 
| Cow position: | chr6:180743-180229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 150, 388 | 
| Conread position: | 523-658 | 
| Cow position: | chr6:51525967-51525832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 136 | 
| Alignm identity: | 110 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 524-777 | 
| Cow position: | chr6:4164769-4164511 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 168, 18 | 
| Conread position: | 524-780 | 
| Cow position: | chr6:42416465-42416728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 143, 64 | 
| Conread position: | 526-645 | 
| Cow position: | chr6:21184184-21184303 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 526-684 | 
| Cow position: | chr6:53553118-53553278 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 137, 11 | 
| Conread position: | 526-693 | 
| Cow position: | chr6:52209293-52209461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 171 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 137, 7 | 
| Conread position: | 526-782 | 
| Cow position: | chr6:62331293-62331027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 136, 171 | 
| Conread position: | 526-1015 | 
| Cow position: | chr6:47383626-47384143 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 137, 90 | 
| Conread position: | 526-1112 | 
| Cow position: | chr6:55610614-55609993 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 311 | 
| Conread position: | 527-970 | 
| Cow position: | chr6:8804918-8804439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 484 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 121, 319 | 
| Conread position: | 527-1020 | 
| Cow position: | chr6:55594019-55594531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 20, 34 | 
| Conread position: | 528-693 | 
| Cow position: | chr6:14133583-14133752 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 136, 0 | 
| Conread position: | 528-782 | 
| Cow position: | chr6:14891206-14890939 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 17, 25 | 
| Conread position: | 529-693 | 
| Cow position: | chr6:22921014-22921181 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 134, 0 | 
| Conread position: | 529-792 | 
| Cow position: | chr6:37487675-37487402 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 134, 54 | 
| Conread position: | 529-814 | 
| Cow position: | chr6:1264236-1264523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 138, 180 | 
| Conread position: | 530-932 | 
| Cow position: | chr6:52248494-52248079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 137, 53 | 
| Conread position: | 531-692 | 
| Cow position: | chr6:5462646-5462486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 134, 85 | 
| Conread position: | 532-777 | 
| Cow position: | chr6:16492276-16492032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 163, 55 | 
| Conread position: | 532-783 | 
| Cow position: | chr6:33147693-33147953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 162, 36 | 
| Conread position: | 533-1126 | 
| Cow position: | chr6:18080885-18080267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 432 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 389 | 
| Conread position: | 536-1119 | 
| Cow position: | chr6:52431399-52430777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 379 | 
| Conread position: | 542-656 | 
| Cow position: | chr6:51398073-51398186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 115 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 543-680 | 
| Cow position: | chr6:22863779-22863643 (view UCSC Genome Browser custom track) | 
| Alignm length: | 139 | 
| Alignm identity: | 105 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 130, 30 | 
| Conread position: | 544-818 | 
| Cow position: | chr6:54806864-54807163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 545-1029 | 
| Cow position: | chr6:67968988-67968461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 91, 300 | 
| Conread position: | 545-1132 | 
| Cow position: | chr6:323667-323047 (view UCSC Genome Browser custom track) | 
| Alignm length: | 626 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 118, 370 | 
| Conread position: | 547-690 | 
| Cow position: | chr6:54164253-54164106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 27, 128 | 
| Conread position: | 547-820 | 
| Cow position: | chr6:16397537-16397245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 0 | 
| Conread position: | 547-887 | 
| Cow position: | chr6:40264542-40264190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 123, 51 | 
| Conread position: | 547-992 | 
| Cow position: | chr6:54140469-54140911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 462 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 18 | 
| Conread position: | 547-1123 | 
| Cow position: | chr6:24902491-24901909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 605 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 147, 33 | 
| Conread position: | 548-780 | 
| Cow position: | chr6:50423753-50423514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 115, 10 | 
| Conread position: | 548-838 | 
| Cow position: | chr6:62592914-62592598 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 125, 0 | 
| Conread position: | 548-975 | 
| Cow position: | chr6:1944376-1944810 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 266 | 
| Conread position: | 550-691 | 
| Cow position: | chr6:16230545-16230680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 550-1096 | 
| Cow position: | chr6:35842309-35842879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 423 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 216 | 
| Conread position: | 550-1135 | 
| Cow position: | chr6:26728878-26728282 (view UCSC Genome Browser custom track) | 
| Alignm length: | 618 | 
| Alignm identity: | 411 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 43, 49 | 
| Conread position: | 551-692 | 
| Cow position: | chr6:34608886-34608741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 146 | 
| Alignm identity: | 117 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 36, 0 | 
| Conread position: | 551-693 | 
| Cow position: | chr6:47150064-47150210 (view UCSC Genome Browser custom track) | 
| Alignm length: | 148 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 56, 37 | 
| Conread position: | 551-777 | 
| Cow position: | chr6:875676-875436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 27, 42 | 
| Conread position: | 551-777 | 
| Cow position: | chr6:54447785-54447540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 34, 0 | 
| Conread position: | 551-780 | 
| Cow position: | chr6:1957122-1956880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-780 | 
| Cow position: | chr6:38053538-38053780 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-780 | 
| Cow position: | chr6:43604420-43604662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:596087-595843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:13605580-13605336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:13619822-13619578 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:15882025-15881781 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:19737326-19737570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:27939576-27939820 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:39797930-39797686 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:40710174-40710418 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:45210943-45211187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-782 | 
| Cow position: | chr6:55582348-55582104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 113, 0 | 
| Conread position: | 551-823 | 
| Cow position: | chr6:54963721-54963436 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 116, 158 | 
| Conread position: | 551-879 | 
| Cow position: | chr6:12927772-12928121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 108 | 
| Conread position: | 551-959 | 
| Cow position: | chr6:62851630-62851195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 36, 138 | 
| Conread position: | 551-1097 | 
| Cow position: | chr6:41162052-41161477 (view UCSC Genome Browser custom track) | 
| Alignm length: | 582 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 112, 369 | 
| Conread position: | 551-1112 | 
| Cow position: | chr6:61268984-61269552 (view UCSC Genome Browser custom track) | 
| Alignm length: | 589 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 141, 111 | 
| Conread position: | 551-1145 | 
| Cow position: | chr6:31535907-31535304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 621 | 
| Alignm identity: | 395 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 139, 36 | 
| Conread position: | 552-679 | 
| Cow position: | chr6:7157104-7157234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 552-780 | 
| Cow position: | chr6:43389715-43389954 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 112, 0 | 
| Conread position: | 552-830 | 
| Cow position: | chr6:6569771-6570069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 115, 0 | 
| Conread position: | 552-918 | 
| Cow position: | chr6:20231170-20230787 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 8 | 
| Conread position: | 553-782 | 
| Cow position: | chr6:68871128-68870886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 553-824 | 
| Cow position: | chr6:68297930-68297639 (view UCSC Genome Browser custom track) | 
| Alignm length: | 296 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 22, 99 | 
| Conread position: | 553-844 | 
| Cow position: | chr6:55608155-55607850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 245 | 
| Conread position: | 553-1113 | 
| Cow position: | chr6:55474901-55475487 (view UCSC Genome Browser custom track) | 
| Alignm length: | 592 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 110, 434 | 
| Conread position: | 554-663 | 
| Cow position: | chr6:44623122-44623013 (view UCSC Genome Browser custom track) | 
| Alignm length: | 110 | 
| Alignm identity: | 96 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 554-680 | 
| Cow position: | chr6:55366746-55366617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 99, 0 | 
| Conread position: | 554-693 | 
| Cow position: | chr6:21608149-21608285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 119, 13 | 
| Conread position: | 554-726 | 
| Cow position: | chr6:58761745-58761920 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 554-775 | 
| Cow position: | chr6:52900815-52901036 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 107, 138 | 
| Conread position: | 554-780 | 
| Cow position: | chr6:57796245-57796006 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 554-813 | 
| Cow position: | chr6:14706759-14706485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 113, 7 | 
| Conread position: | 554-813 | 
| Cow position: | chr6:48468454-48468736 (view UCSC Genome Browser custom track) | 
| Alignm length: | 283 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 554-818 | 
| Cow position: | chr6:2640470-2640179 (view UCSC Genome Browser custom track) | 
| Alignm length: | 293 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 8, 280 | 
| Conread position: | 554-824 | 
| Cow position: | chr6:57685812-57686099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 111, 21 | 
| Conread position: | 554-827 | 
| Cow position: | chr6:51071356-51071658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 109, 212 | 
| Conread position: | 554-830 | 
| Cow position: | chr6:12844962-12845259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 99, 213 | 
| Conread position: | 554-885 | 
| Cow position: | chr6:8318513-8318155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 104, 0 | 
| Conread position: | 554-885 | 
| Cow position: | chr6:29113008-29112669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 121, 115 | 
| Conread position: | 554-885 | 
| Cow position: | chr6:59577001-59577361 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 115, 126 | 
| Conread position: | 554-900 | 
| Cow position: | chr6:45596872-45596514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 367 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 99, 137 | 
| Conread position: | 554-1034 | 
| Cow position: | chr6:63047229-63047748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 113, 72 | 
| Conread position: | 554-1035 | 
| Cow position: | chr6:35990574-35990077 (view UCSC Genome Browser custom track) | 
| Alignm length: | 505 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 25 | 
| Conread position: | 554-1104 | 
| Cow position: | chr6:15305241-15305798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 405 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 261 | 
| Conread position: | 554-1105 | 
| Cow position: | chr6:10106348-10105755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 416 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 116, 108 | 
| Conread position: | 554-1127 | 
| Cow position: | chr6:47304980-47305590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 616 | 
| Alignm identity: | 433 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 364 | 
| Conread position: | 555-663 | 
| Cow position: | chr6:55282698-55282590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 109 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 555-778 | 
| Cow position: | chr6:452284-452521 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 555-779 | 
| Cow position: | chr6:33897573-33897343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 555-782 | 
| Cow position: | chr6:10107303-10107542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 109, 49 | 
| Conread position: | 555-782 | 
| Cow position: | chr6:10536136-10535896 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 171 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 555-782 | 
| Cow position: | chr6:26925737-26925498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 555-793 | 
| Cow position: | chr6:24649508-24649753 (view UCSC Genome Browser custom track) | 
| Alignm length: | 252 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 8, 14 | 
| Conread position: | 555-1138 | 
| Cow position: | chr6:2546897-2547516 (view UCSC Genome Browser custom track) | 
| Alignm length: | 628 | 
| Alignm identity: | 424 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 38 | 
| Conread position: | 556-996 | 
| Cow position: | chr6:456835-457293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 55 | 
| Conread position: | 557-1015 | 
| Cow position: | chr6:58605937-58606421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 106, 209 | 
| Conread position: | 558-782 | 
| Cow position: | chr6:41033719-41033956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 559-792 | 
| Cow position: | chr6:17871055-17871300 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 112, 233 | 
| Conread position: | 560-693 | 
| Cow position: | chr6:35260506-35260642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 137 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 560-1053 | 
| Cow position: | chr6:66532144-66531647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 510 | 
| Alignm identity: | 359 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 97, 211 | 
| Conread position: | 560-1112 | 
| Cow position: | chr6:15242511-15243074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 406 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 83 | 
| Conread position: | 562-782 | 
| Cow position: | chr6:68663251-68663016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 236 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 562-823 | 
| Cow position: | chr6:59828953-59829207 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 11, 45 | 
| Conread position: | 562-1052 | 
| Cow position: | chr6:54867179-54867691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 521 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 51 | 
| Conread position: | 562-1112 | 
| Cow position: | chr6:36195874-36196437 (view UCSC Genome Browser custom track) | 
| Alignm length: | 578 | 
| Alignm identity: | 402 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 101, 262 | 
| Conread position: | 563-822 | 
| Cow position: | chr6:16634548-16634279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 197 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 100, 83 | 
| Conread position: | 564-663 | 
| Cow position: | chr6:60108350-60108251 (view UCSC Genome Browser custom track) | 
| Alignm length: | 100 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 564-693 | 
| Cow position: | chr6:1228961-1228828 (view UCSC Genome Browser custom track) | 
| Alignm length: | 134 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 564-1015 | 
| Cow position: | chr6:54980764-54981246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 98, 354 | 
| Conread position: | 567-1069 | 
| Cow position: | chr6:28482679-28483205 (view UCSC Genome Browser custom track) | 
| Alignm length: | 537 | 
| Alignm identity: | 381 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 340 | 
| Conread position: | 567-1116 | 
| Cow position: | chr6:44078182-44078754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 404 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 100, 33 | 
| Conread position: | 567-1116 | 
| Cow position: | chr6:68376623-68376076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 568 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 33, 90 | 
| Conread position: | 568-782 | 
| Cow position: | chr6:32054868-32054645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 124, 98 | 
| Conread position: | 568-782 | 
| Cow position: | chr6:37217434-37217661 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 568-819 | 
| Cow position: | chr6:5672896-5673162 (view UCSC Genome Browser custom track) | 
| Alignm length: | 268 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 98, 64 | 
| Conread position: | 569-721 | 
| Cow position: | chr6:37148489-37148646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 98, 0 | 
| Conread position: | 570-767 | 
| Cow position: | chr6:42693031-42693239 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 93, 0 | 
| Conread position: | 570-775 | 
| Cow position: | chr6:26837716-26837505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 164 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 94, 66 | 
| Conread position: | 570-780 | 
| Cow position: | chr6:48794337-48794113 (view UCSC Genome Browser custom track) | 
| Alignm length: | 227 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 39, 30 | 
| Conread position: | 570-809 | 
| Cow position: | chr6:60152704-60152963 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 92, 0 | 
| Conread position: | 570-945 | 
| Cow position: | chr6:28148512-28148902 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 16, 245 | 
| Conread position: | 570-1116 | 
| Cow position: | chr6:10176630-10176060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 579 | 
| Alignm identity: | 421 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 124, 342 | 
| Conread position: | 571-779 | 
| Cow position: | chr6:7216501-7216720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 571-782 | 
| Cow position: | chr6:34111265-34111041 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 89, 0 | 
| Conread position: | 571-782 | 
| Cow position: | chr6:43404259-43404483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 225 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 93, 0 | 
| Conread position: | 571-964 | 
| Cow position: | chr6:58589705-58590108 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 121, 174 | 
| Conread position: | 576-828 | 
| Cow position: | chr6:12934465-12934194 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 91, 76 | 
| Conread position: | 576-1034 | 
| Cow position: | chr6:19681842-19681369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 120, 97 | 
| Conread position: | 577-693 | 
| Cow position: | chr6:62808834-62808953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 120 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 90, 0 | 
| Conread position: | 577-888 | 
| Cow position: | chr6:50446084-50445749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 338 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 87, 144 | 
| Conread position: | 577-1004 | 
| Cow position: | chr6:10459413-10459868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 88, 49 | 
| Conread position: | 578-782 | 
| Cow position: | chr6:38776277-38776494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 86, 0 | 
| Conread position: | 578-793 | 
| Cow position: | chr6:12116374-12116151 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 91, 26 | 
| Conread position: | 578-826 | 
| Cow position: | chr6:3936223-3936484 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 85, 240 | 
| Conread position: | 578-925 | 
| Cow position: | chr6:561296-561669 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 94, 329 | 
| Conread position: | 579-1137 | 
| Cow position: | chr6:12337662-12338250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 596 | 
| Alignm identity: | 415 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 419 | 
| Conread position: | 581-885 | 
| Cow position: | chr6:20255701-20255391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 111, 72 | 
| Conread position: | 583-693 | 
| Cow position: | chr6:21302300-21302410 (view UCSC Genome Browser custom track) | 
| Alignm length: | 111 | 
| Alignm identity: | 92 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 583-831 | 
| Cow position: | chr6:57597318-57597045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 276 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 67, 185 | 
| Conread position: | 584-780 | 
| Cow position: | chr6:28276342-28276551 (view UCSC Genome Browser custom track) | 
| Alignm length: | 210 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 83, 0 | 
| Conread position: | 584-787 | 
| Cow position: | chr6:1538486-1538694 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 114, 0 | 
| Conread position: | 585-777 | 
| Cow position: | chr6:43014498-43014295 (view UCSC Genome Browser custom track) | 
| Alignm length: | 205 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 79, 124 | 
| Conread position: | 585-884 | 
| Cow position: | chr6:47625275-47624956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 78, 25 | 
| Conread position: | 585-1135 | 
| Cow position: | chr6:60859620-60859040 (view UCSC Genome Browser custom track) | 
| Alignm length: | 590 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 322 | 
| Conread position: | 587-699 | 
| Cow position: | chr6:37468429-37468314 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 94 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 76, 0 | 
| Conread position: | 588-766 | 
| Cow position: | chr6:13345227-13345038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 76, 0 | 
| Conread position: | 588-782 | 
| Cow position: | chr6:36299492-36299285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 76, 0 | 
| Conread position: | 588-788 | 
| Cow position: | chr6:6117870-6117653 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 71, 205 | 
| Conread position: | 588-824 | 
| Cow position: | chr6:30285375-30285623 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 75, 219 | 
| Conread position: | 588-881 | 
| Cow position: | chr6:12500543-12500862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 321 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 286 | 
| Conread position: | 589-693 | 
| Cow position: | chr6:50042793-50042900 (view UCSC Genome Browser custom track) | 
| Alignm length: | 108 | 
| Alignm identity: | 91 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 590-693 | 
| Cow position: | chr6:50527774-50527668 (view UCSC Genome Browser custom track) | 
| Alignm length: | 107 | 
| Alignm identity: | 88 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 74, 0 | 
| Conread position: | 590-780 | 
| Cow position: | chr6:12389787-12389986 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 591-1116 | 
| Cow position: | chr6:46557747-46558293 (view UCSC Genome Browser custom track) | 
| Alignm length: | 553 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 78, 463 | 
| Conread position: | 592-762 | 
| Cow position: | chr6:1104358-1104178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 72, 44 | 
| Conread position: | 592-777 | 
| Cow position: | chr6:68127144-68127342 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 71, 0 | 
| Conread position: | 592-820 | 
| Cow position: | chr6:60467718-60467961 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 68, 228 | 
| Conread position: | 592-1108 | 
| Cow position: | chr6:21587731-21587203 (view UCSC Genome Browser custom track) | 
| Alignm length: | 553 | 
| Alignm identity: | 391 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 284 | 
| Conread position: | 592-1116 | 
| Cow position: | chr6:21534753-21535279 (view UCSC Genome Browser custom track) | 
| Alignm length: | 549 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 16 | 
| Conread position: | 594-693 | 
| Cow position: | chr6:56596967-56597069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 103 | 
| Alignm identity: | 87 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 594-1111 | 
| Cow position: | chr6:611260-611777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 538 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 9 | 
| Conread position: | 595-859 | 
| Cow position: | chr6:19508737-19508461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 279 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 80, 8 | 
| Conread position: | 597-692 | 
| Cow position: | chr6:20329454-20329548 (view UCSC Genome Browser custom track) | 
| Alignm length: | 96 | 
| Alignm identity: | 82 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 597-693 | 
| Cow position: | chr6:7010414-7010318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 97 | 
| Alignm identity: | 85 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 597-779 | 
| Cow position: | chr6:58315742-58315934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 597-806 | 
| Cow position: | chr6:67044666-67044881 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 70, 35 | 
| Conread position: | 600-695 | 
| Cow position: | chr6:24109780-24109875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 96 | 
| Alignm identity: | 81 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 600-779 | 
| Cow position: | chr6:21300823-21300631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 600-1015 | 
| Cow position: | chr6:55956406-55955974 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 63, 89 | 
| Conread position: | 600-1022 | 
| Cow position: | chr6:31525750-31526190 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 184 | 
| Conread position: | 601-848 | 
| Cow position: | chr6:5329854-5330116 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 68, 0 | 
| Conread position: | 601-940 | 
| Cow position: | chr6:47150477-47150852 (view UCSC Genome Browser custom track) | 
| Alignm length: | 379 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 7, 30 | 
| Conread position: | 602-1004 | 
| Cow position: | chr6:53401071-53401482 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 71, 167 | 
| Conread position: | 602-1140 | 
| Cow position: | chr6:47519751-47520319 (view UCSC Genome Browser custom track) | 
| Alignm length: | 572 | 
| Alignm identity: | 380 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 67, 232 | 
| Conread position: | 603-832 | 
| Cow position: | chr6:17248434-17248684 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 57, 11 | 
| Conread position: | 603-1035 | 
| Cow position: | chr6:60057964-60057502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 470 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 64, 319 | 
| Conread position: | 604-914 | 
| Cow position: | chr6:58172890-58173220 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 85, 122 | 
| Conread position: | 605-1017 | 
| Cow position: | chr6:63272914-63272473 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 58, 252 | 
| Conread position: | 608-1127 | 
| Cow position: | chr6:61489053-61489570 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 357 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 55, 41 | 
| Conread position: | 609-845 | 
| Cow position: | chr6:34235728-34235471 (view UCSC Genome Browser custom track) | 
| Alignm length: | 259 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 14, 216 | 
| Conread position: | 610-999 | 
| Cow position: | chr6:54369188-54368783 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 84, 292 | 
| Conread position: | 611-945 | 
| Cow position: | chr6:14850997-14850647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 85, 75 | 
| Conread position: | 612-777 | 
| Cow position: | chr6:26696897-26696722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 613-933 | 
| Cow position: | chr6:62479454-62479106 (view UCSC Genome Browser custom track) | 
| Alignm length: | 349 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 54, 0 | 
| Conread position: | 613-996 | 
| Cow position: | chr6:19330043-19329649 (view UCSC Genome Browser custom track) | 
| Alignm length: | 410 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 82, 246 | 
| Conread position: | 615-1157 | 
| Cow position: | chr6:6201161-6201710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 566 | 
| Alignm identity: | 400 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 238 | 
| Conread position: | 616-835 | 
| Cow position: | chr6:69500044-69500276 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 46, 131 | 
| Conread position: | 616-1028 | 
| Cow position: | chr6:57164141-57164575 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 53, 109 | 
| Conread position: | 616-1068 | 
| Cow position: | chr6:38218378-38218857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 488 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 53, 210 | 
| Conread position: | 617-761 | 
| Cow position: | chr6:51387481-51387632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 152 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 57, 0 | 
| Conread position: | 619-1125 | 
| Cow position: | chr6:6264363-6264898 (view UCSC Genome Browser custom track) | 
| Alignm length: | 539 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 201 | 
| Conread position: | 620-1116 | 
| Cow position: | chr6:61515481-61514959 (view UCSC Genome Browser custom track) | 
| Alignm length: | 534 | 
| Alignm identity: | 366 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 306 | 
| Conread position: | 621-817 | 
| Cow position: | chr6:32024618-32024401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 48, 19 | 
| Conread position: | 622-1143 | 
| Cow position: | chr6:22332678-22332130 (view UCSC Genome Browser custom track) | 
| Alignm length: | 562 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 41, 207 | 
| Conread position: | 625-785 | 
| Cow position: | chr6:60274500-60274329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 42, 0 | 
| Conread position: | 625-793 | 
| Cow position: | chr6:3591849-3592022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 177 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 69, 150 | 
| Conread position: | 626-885 | 
| Cow position: | chr6:32337134-32337395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 43, 91 | 
| Conread position: | 627-1051 | 
| Cow position: | chr6:42961642-42961191 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 39, 248 | 
| Conread position: | 627-1123 | 
| Cow position: | chr6:60473859-60474381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 530 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 222 | 
| Conread position: | 627-1137 | 
| Cow position: | chr6:50746702-50747263 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 388 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 42, 121 | 
| Conread position: | 629-1142 | 
| Cow position: | chr6:54365596-54365061 (view UCSC Genome Browser custom track) | 
| Alignm length: | 543 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 94 | 
| Conread position: | 630-1148 | 
| Cow position: | chr6:48281723-48282261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 547 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 230 | 
| Conread position: | 633-1047 | 
| Cow position: | chr6:35471795-35471341 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 313 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 30, 198 | 
| Conread position: | 637-835 | 
| Cow position: | chr6:35769747-35769530 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 30, 187 | 
| Conread position: | 637-1068 | 
| Cow position: | chr6:40713763-40713322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 30, 14 | 
| Conread position: | 643-860 | 
| Cow position: | chr6:64449133-64449372 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 20, 96 | 
| Conread position: | 646-1000 | 
| Cow position: | chr6:49002977-49002618 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 50, 249 | 
| Conread position: | 649-929 | 
| Cow position: | chr6:32335567-32335851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 71, 75 | 
| Conread position: | 649-1157 | 
| Cow position: | chr6:3952272-3952803 (view UCSC Genome Browser custom track) | 
| Alignm length: | 536 | 
| Alignm identity: | 371 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 26, 169 | 
| Conread position: | 654-973 | 
| Cow position: | chr6:130409-130068 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 38, 170 | 
| Conread position: | 654-1110 | 
| Cow position: | chr6:54132571-54133045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 13, 168 | 
| Conread position: | 660-1023 | 
| Cow position: | chr6:60350537-60350147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 35, 11 | 
| Conread position: | 660-1028 | 
| Cow position: | chr6:8788270-8787887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 42, 11 | 
| Conread position: | 660-1105 | 
| Cow position: | chr6:67950721-67951185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 35, 11 | 
| Conread position: | 661-826 | 
| Cow position: | chr6:17068057-17067875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 31, 0 | 
| Conread position: | 661-1016 | 
| Cow position: | chr6:54600130-54600486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 15, 108 | 
| Conread position: | 662-844 | 
| Cow position: | chr6:1002471-1002271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 29, 160 | 
| Conread position: | 662-1021 | 
| Cow position: | chr6:20098201-20097816 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 33, 159 | 
| Conread position: | 662-1036 | 
| Cow position: | chr6:54991229-54990843 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 107, 44 | 
| Conread position: | 662-1087 | 
| Cow position: | chr6:26915093-26915538 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 35, 159 | 
| Conread position: | 662-1112 | 
| Cow position: | chr6:38853895-38853421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 485 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 34, 174 | 
| Conread position: | 662-1115 | 
| Cow position: | chr6:61113513-61114003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 329 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 34, 445 | 
| Conread position: | 662-1116 | 
| Cow position: | chr6:65676020-65676483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 31, 184 | 
| Conread position: | 662-1119 | 
| Cow position: | chr6:34251512-34251056 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 34, 62 | 
| Conread position: | 665-946 | 
| Cow position: | chr6:21542085-21542391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 308 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 6, 157 | 
| Conread position: | 665-1117 | 
| Cow position: | chr6:4383260-4383713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 476 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 6 | 
| Conread position: | 666-925 | 
| Cow position: | chr6:53710885-53711161 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 30, 153 | 
| Conread position: | 666-933 | 
| Cow position: | chr6:54885146-54884851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 298 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 30, 281 | 
| Conread position: | 670-1126 | 
| Cow position: | chr6:9736868-9736394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 492 | 
| Alignm identity: | 323 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 29, 126 | 
| Conread position: | 670-1135 | 
| Cow position: | chr6:34475772-34475299 (view UCSC Genome Browser custom track) | 
| Alignm length: | 489 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 44, 66 | 
| Conread position: | 671-945 | 
| Cow position: | chr6:68049208-68049498 (view UCSC Genome Browser custom track) | 
| Alignm length: | 295 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 25, 200 | 
| Conread position: | 671-1116 | 
| Cow position: | chr6:24468620-24468160 (view UCSC Genome Browser custom track) | 
| Alignm length: | 480 | 
| Alignm identity: | 330 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 25, 69 | 
| Conread position: | 671-1127 | 
| Cow position: | chr6:60144405-60143945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 477 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 25, 97 | 
| Conread position: | 672-823 | 
| Cow position: | chr6:22986214-22986049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 168 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 12, 137 | 
| Conread position: | 672-933 | 
| Cow position: | chr6:67304575-67304859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 287 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 24, 181 | 
| Conread position: | 672-939 | 
| Cow position: | chr6:49685358-49685645 (view UCSC Genome Browser custom track) | 
| Alignm length: | 289 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 23, 251 | 
| Conread position: | 674-874 | 
| Cow position: | chr6:53139151-53138924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 674-945 | 
| Cow position: | chr6:60239613-60239328 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 23, 199 | 
| Conread position: | 674-1111 | 
| Cow position: | chr6:46865810-46865351 (view UCSC Genome Browser custom track) | 
| Alignm length: | 468 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 40, 5 | 
| Conread position: | 675-830 | 
| Cow position: | chr6:51398577-51398749 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 675-881 | 
| Cow position: | chr6:388947-389178 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 21, 65 | 
| Conread position: | 675-884 | 
| Cow position: | chr6:45160515-45160287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 167 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 21, 143 | 
| Conread position: | 676-1058 | 
| Cow position: | chr6:16191453-16191849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 409 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 89, 19 | 
| Conread position: | 676-1117 | 
| Cow position: | chr6:46860390-46859931 (view UCSC Genome Browser custom track) | 
| Alignm length: | 467 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 16, 148 | 
| Conread position: | 680-892 | 
| Cow position: | chr6:36011481-36011695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 22, 163 | 
| Conread position: | 680-1002 | 
| Cow position: | chr6:899503-899169 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 15, 33 | 
| Conread position: | 683-1068 | 
| Cow position: | chr6:52412645-52413049 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 31, 216 | 
| Conread position: | 690-930 | 
| Cow position: | chr6:415894-416157 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 24, 16 | 
| Conread position: | 690-1053 | 
| Cow position: | chr6:37199747-37199365 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 24, 277 | 
| Conread position: | 693-1031 | 
| Cow position: | chr6:51893705-51893348 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 7, 220 | 
| Conread position: | 695-1036 | 
| Cow position: | chr6:53651844-53652198 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 19, 121 | 
| Conread position: | 696-826 | 
| Cow position: | chr6:21184760-21184901 (view UCSC Genome Browser custom track) | 
| Alignm length: | 143 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 18, 120 | 
| Conread position: | 696-830 | 
| Cow position: | chr6:59302021-59301873 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 696-835 | 
| Cow position: | chr6:89104-88952 (view UCSC Genome Browser custom track) | 
| Alignm length: | 154 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 18, 122 | 
| Conread position: | 696-835 | 
| Cow position: | chr6:21812534-21812683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 18, 0 | 
| Conread position: | 696-860 | 
| Cow position: | chr6:21110774-21110945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 18, 95 | 
| Conread position: | 696-875 | 
| Cow position: | chr6:39994657-39994463 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 18, 122 | 
| Conread position: | 696-876 | 
| Cow position: | chr6:66453605-66453798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 18, 67 | 
| Conread position: | 696-881 | 
| Cow position: | chr6:242618-242814 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 159 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 18, 65 | 
| Conread position: | 696-884 | 
| Cow position: | chr6:30786344-30786148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 199 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 19, 112 | 
| Conread position: | 696-885 | 
| Cow position: | chr6:31564531-31564331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 15, 114 | 
| Conread position: | 696-885 | 
| Cow position: | chr6:56041818-56041617 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 18, 115 | 
| Conread position: | 696-907 | 
| Cow position: | chr6:24515389-24515168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 226 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 18, 48 | 
| Conread position: | 696-932 | 
| Cow position: | chr6:53731325-53731577 (view UCSC Genome Browser custom track) | 
| Alignm length: | 254 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 19, 210 | 
| Conread position: | 696-933 | 
| Cow position: | chr6:25773577-25773331 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 180 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 18, 144 | 
| Conread position: | 696-942 | 
| Cow position: | chr6:34031472-34031723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 258 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 19, 65 | 
| Conread position: | 696-945 | 
| Cow position: | chr6:38614628-38614886 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 202 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 18, 111 | 
| Conread position: | 696-971 | 
| Cow position: | chr6:57405320-57405032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 87, 119 | 
| Conread position: | 696-1003 | 
| Cow position: | chr6:23248159-23247841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 18, 131 | 
| Conread position: | 696-1029 | 
| Cow position: | chr6:66874166-66874500 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 18, 59 | 
| Conread position: | 696-1034 | 
| Cow position: | chr6:28977225-28976884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 112 | 
| Conread position: | 696-1039 | 
| Cow position: | chr6:8965894-8966258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 18, 11 | 
| Conread position: | 696-1039 | 
| Cow position: | chr6:66131112-66131465 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 1.99993e-41 | 
| Alignm gaps (pig, cow): | 18, 65 | 
| Conread position: | 696-1051 | 
| Cow position: | chr6:21869841-21869476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 18, 115 | 
| Conread position: | 696-1054 | 
| Cow position: | chr6:67456507-67456894 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 18, 224 | 
| Conread position: | 696-1055 | 
| Cow position: | chr6:16423503-16423883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 18, 119 | 
| Conread position: | 696-1068 | 
| Cow position: | chr6:38641302-38641681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 114 | 
| Conread position: | 696-1068 | 
| Cow position: | chr6:40774544-40774148 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 267 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 19, 114 | 
| Conread position: | 696-1103 | 
| Cow position: | chr6:5114243-5113821 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 9, 120 | 
| Conread position: | 696-1104 | 
| Cow position: | chr6:41733431-41733862 (view UCSC Genome Browser custom track) | 
| Alignm length: | 433 | 
| Alignm identity: | 297 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 224 | 
| Conread position: | 696-1112 | 
| Cow position: | chr6:10400091-10399673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 18, 140 | 
| Conread position: | 696-1112 | 
| Cow position: | chr6:16103398-16102956 (view UCSC Genome Browser custom track) | 
| Alignm length: | 448 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 18, 211 | 
| Conread position: | 696-1112 | 
| Cow position: | chr6:17997511-17997082 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 201 | 
| Conread position: | 696-1113 | 
| Cow position: | chr6:23532467-23532882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 18, 119 | 
| Conread position: | 696-1113 | 
| Cow position: | chr6:29239748-29240168 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 18, 201 | 
| Conread position: | 696-1116 | 
| Cow position: | chr6:53024994-53024572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 18, 133 | 
| Conread position: | 696-1126 | 
| Cow position: | chr6:44194741-44194305 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 18, 130 | 
| Conread position: | 696-1127 | 
| Cow position: | chr6:7190315-7189879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 18, 108 | 
| Conread position: | 696-1127 | 
| Cow position: | chr6:50090444-50090895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 10, 152 | 
| Conread position: | 696-1137 | 
| Cow position: | chr6:6063475-6063032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 19, 80 | 
| Conread position: | 696-1137 | 
| Cow position: | chr6:21231340-21231772 (view UCSC Genome Browser custom track) | 
| Alignm length: | 449 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 18, 113 | 
| Conread position: | 696-1138 | 
| Cow position: | chr6:51581454-51580992 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 19, 132 | 
| Conread position: | 696-1141 | 
| Cow position: | chr6:7539378-7539836 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 108 | 
| Conread position: | 696-1141 | 
| Cow position: | chr6:36202632-36203081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 16, 118 | 
| Conread position: | 696-1148 | 
| Cow position: | chr6:5609636-5609170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 474 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 117 | 
| Conread position: | 696-1148 | 
| Cow position: | chr6:59015757-59015309 (view UCSC Genome Browser custom track) | 
| Alignm length: | 471 | 
| Alignm identity: | 309 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 18, 138 | 
| Conread position: | 696-1156 | 
| Cow position: | chr6:14949677-14949213 (view UCSC Genome Browser custom track) | 
| Alignm length: | 481 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 18, 195 | 
| Conread position: | 697-847 | 
| Cow position: | chr6:10635981-10636136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 17, 64 | 
| Conread position: | 697-854 | 
| Cow position: | chr6:46245518-46245343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 17, 0 | 
| Conread position: | 697-883 | 
| Cow position: | chr6:46400601-46400406 (view UCSC Genome Browser custom track) | 
| Alignm length: | 197 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 14, 188 | 
| Conread position: | 697-1021 | 
| Cow position: | chr6:7989608-7989274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 68, 23 | 
| Conread position: | 697-1036 | 
| Cow position: | chr6:60442223-60442565 (view UCSC Genome Browser custom track) | 
| Alignm length: | 356 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 17, 205 | 
| Conread position: | 697-1045 | 
| Cow position: | chr6:6098477-6098099 (view UCSC Genome Browser custom track) | 
| Alignm length: | 380 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 18, 115 | 
| Conread position: | 697-1055 | 
| Cow position: | chr6:54864862-54864483 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 277 | 
| Conread position: | 697-1068 | 
| Cow position: | chr6:45606644-45606267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 140, 70 | 
| Conread position: | 697-1068 | 
| Cow position: | chr6:48187776-48187390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 17, 194 | 
| Conread position: | 697-1085 | 
| Cow position: | chr6:63921788-63922186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 7, 78 | 
| Conread position: | 697-1100 | 
| Cow position: | chr6:19695611-19696032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 109 | 
| Conread position: | 697-1101 | 
| Cow position: | chr6:63720004-63720416 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 17, 113 | 
| Conread position: | 697-1104 | 
| Cow position: | chr6:58732509-58732073 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 17, 215 | 
| Conread position: | 697-1105 | 
| Cow position: | chr6:38207691-38207258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 437 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 131 | 
| Conread position: | 697-1108 | 
| Cow position: | chr6:12092179-12091755 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 92 | 
| Conread position: | 697-1116 | 
| Cow position: | chr6:66433753-66434193 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 317 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 144 | 
| Conread position: | 697-1124 | 
| Cow position: | chr6:54430624-54431083 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 310 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 19, 316 | 
| Conread position: | 697-1124 | 
| Cow position: | chr6:59620474-59620903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 17, 177 | 
| Conread position: | 697-1126 | 
| Cow position: | chr6:53460767-53460323 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 306 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 17, 117 | 
| Conread position: | 697-1127 | 
| Cow position: | chr6:15301012-15300590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 167 | 
| Conread position: | 697-1127 | 
| Cow position: | chr6:38440987-38441430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 17, 97 | 
| Conread position: | 697-1128 | 
| Cow position: | chr6:21456885-21456427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 469 | 
| Alignm identity: | 308 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 20, 119 | 
| Conread position: | 697-1138 | 
| Cow position: | chr6:37467734-37467275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 466 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 142 | 
| Conread position: | 697-1149 | 
| Cow position: | chr6:65702596-65702138 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 9.80909e-45 | 
| Alignm gaps (pig, cow): | 17, 150 | 
| Conread position: | 697-1154 | 
| Cow position: | chr6:6400753-6401242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 498 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 17, 120 | 
| Conread position: | 698-881 | 
| Cow position: | chr6:15923193-15922995 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 144 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 18, 116 | 
| Conread position: | 698-925 | 
| Cow position: | chr6:18968965-18968734 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 177 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 88, 15 | 
| Conread position: | 698-936 | 
| Cow position: | chr6:52025848-52025593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 186 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 698-1029 | 
| Cow position: | chr6:528472-528133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 10, 122 | 
| Conread position: | 698-1048 | 
| Cow position: | chr6:59069822-59069450 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 16, 120 | 
| Conread position: | 698-1127 | 
| Cow position: | chr6:55546355-55545922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 8, 24 | 
| Conread position: | 698-1147 | 
| Cow position: | chr6:20157130-20157606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 478 | 
| Alignm identity: | 314 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 16, 380 | 
| Conread position: | 698-1148 | 
| Cow position: | chr6:35435810-35436255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 463 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 17, 96 | 
| Conread position: | 699-884 | 
| Cow position: | chr6:5462242-5462053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 194 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 15, 62 | 
| Conread position: | 699-929 | 
| Cow position: | chr6:48425514-48425274 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 15, 193 | 
| Conread position: | 699-1011 | 
| Cow position: | chr6:28318216-28318529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 15, 110 | 
| Conread position: | 699-1110 | 
| Cow position: | chr6:21062076-21061658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 15, 64 | 
| Conread position: | 699-1112 | 
| Cow position: | chr6:65903810-65903391 (view UCSC Genome Browser custom track) | 
| Alignm length: | 427 | 
| Alignm identity: | 269 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 15, 139 | 
| Conread position: | 699-1124 | 
| Cow position: | chr6:24110111-24110531 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 73 | 
| Conread position: | 699-1157 | 
| Cow position: | chr6:53519816-53519343 (view UCSC Genome Browser custom track) | 
| Alignm length: | 482 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 8.99634e-43 | 
| Alignm gaps (pig, cow): | 15, 203 | 
| Conread position: | 700-819 | 
| Cow position: | chr6:17220646-17220520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 127 | 
| Alignm identity: | 102 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 700-830 | 
| Cow position: | chr6:37603331-37603470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 141 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 14, 123 | 
| Conread position: | 700-1112 | 
| Cow position: | chr6:37149002-37149417 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 303 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 60, 86 | 
| Conread position: | 701-1116 | 
| Cow position: | chr6:47355633-47356065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 302 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 112 | 
| Conread position: | 704-1035 | 
| Cow position: | chr6:65259655-65259336 (view UCSC Genome Browser custom track) | 
| Alignm length: | 335 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 13, 39 | 
| Conread position: | 704-1053 | 
| Cow position: | chr6:47799110-47799468 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 6e-40 | 
| Alignm gaps (pig, cow): | 10, 50 | 
| Conread position: | 708-898 | 
| Cow position: | chr6:25008530-25008730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 202 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 6, 102 | 
| Conread position: | 714-932 | 
| Cow position: | chr6:61137194-61137428 (view UCSC Genome Browser custom track) | 
| Alignm length: | 239 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 55, 104 | 
| Conread position: | 715-1049 | 
| Cow position: | chr6:32518049-32517710 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 225 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 54, 110 | 
| Conread position: | 715-1085 | 
| Cow position: | chr6:19012893-19013271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 52, 233 | 
| Conread position: | 716-940 | 
| Cow position: | chr6:9838987-9839232 (view UCSC Genome Browser custom track) | 
| Alignm length: | 247 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 49, 241 | 
| Conread position: | 716-1087 | 
| Cow position: | chr6:8125157-8125539 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 281 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 128 | 
| Conread position: | 716-1119 | 
| Cow position: | chr6:59798493-59798891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 116, 52 | 
| Conread position: | 716-1127 | 
| Cow position: | chr6:59104433-59104854 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 2e-37 | 
| Alignm gaps (pig, cow): | 49, 77 | 
| Conread position: | 716-1137 | 
| Cow position: | chr6:44566237-44566687 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 53, 252 | 
| Conread position: | 717-1054 | 
| Cow position: | chr6:35993403-35993759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 48, 212 | 
| Conread position: | 717-1116 | 
| Cow position: | chr6:60819341-60819754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 2.94273e-44 | 
| Alignm gaps (pig, cow): | 52, 173 | 
| Conread position: | 718-1119 | 
| Cow position: | chr6:12668934-12669340 (view UCSC Genome Browser custom track) | 
| Alignm length: | 417 | 
| Alignm identity: | 295 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 169 | 
| Conread position: | 718-1124 | 
| Cow position: | chr6:65264708-65264304 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 49, 176 | 
| Conread position: | 719-1068 | 
| Cow position: | chr6:17334229-17333863 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 49, 171 | 
| Conread position: | 720-929 | 
| Cow position: | chr6:54287909-54288121 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 57, 163 | 
| Conread position: | 720-1124 | 
| Cow position: | chr6:27888179-27888590 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 288 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 45, 10 | 
| Conread position: | 721-1127 | 
| Cow position: | chr6:15447378-15446942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 48, 107 | 
| Conread position: | 722-1122 | 
| Cow position: | chr6:11246595-11247015 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 89 | 
| Conread position: | 723-1110 | 
| Cow position: | chr6:19446092-19446486 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 279 | 
| Alignm E-value: | 8.96831e-44 | 
| Alignm gaps (pig, cow): | 43, 99 | 
| Conread position: | 724-1019 | 
| Cow position: | chr6:47640604-47640291 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 212 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 40, 93 | 
| Conread position: | 724-1054 | 
| Cow position: | chr6:16764809-16764470 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 8.00001e-42 | 
| Alignm gaps (pig, cow): | 108, 57 | 
| Conread position: | 727-930 | 
| Cow position: | chr6:44984162-44984381 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 42, 174 | 
| Conread position: | 727-1149 | 
| Cow position: | chr6:60783706-60784141 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 294 | 
| Alignm E-value: | 2e-40 | 
| Alignm gaps (pig, cow): | 42, 121 | 
| Conread position: | 728-1121 | 
| Cow position: | chr6:15243088-15243505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 423 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 28, 99 | 
| Conread position: | 728-1164 | 
| Cow position: | chr6:14914402-14913953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 312 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 207 | 
| Conread position: | 729-940 | 
| Cow position: | chr6:12543095-12542868 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 36, 84 | 
| Conread position: | 731-1116 | 
| Cow position: | chr6:57546376-57545990 (view UCSC Genome Browser custom track) | 
| Alignm length: | 400 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 1e-36 | 
| Alignm gaps (pig, cow): | 32, 64 | 
| Conread position: | 732-1067 | 
| Cow position: | chr6:48112045-48112382 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 238 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 37, 76 | 
| Conread position: | 732-1114 | 
| Cow position: | chr6:54036294-54035903 (view UCSC Genome Browser custom track) | 
| Alignm length: | 397 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 33, 91 | 
| Conread position: | 732-1115 | 
| Cow position: | chr6:3595634-3596032 (view UCSC Genome Browser custom track) | 
| Alignm length: | 401 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 1e-35 | 
| Alignm gaps (pig, cow): | 6, 55 | 
| Conread position: | 735-1047 | 
| Cow position: | chr6:582424-582104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 224 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 12, 76 | 
| Conread position: | 735-1107 | 
| Cow position: | chr6:60739859-60740240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 34, 170 | 
| Conread position: | 735-1127 | 
| Cow position: | chr6:50984068-50984472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 4.2039e-45 | 
| Alignm gaps (pig, cow): | 34, 154 | 
| Conread position: | 735-1136 | 
| Cow position: | chr6:3464128-3464550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 34, 263 | 
| Conread position: | 736-1067 | 
| Cow position: | chr6:67323161-67323492 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 25, 117 | 
| Conread position: | 736-1106 | 
| Cow position: | chr6:19755232-19754849 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 33, 82 | 
| Conread position: | 736-1126 | 
| Cow position: | chr6:7128555-7128155 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 33, 93 | 
| Conread position: | 737-1158 | 
| Cow position: | chr6:19292658-19293081 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 27, 45 | 
| Conread position: | 738-1121 | 
| Cow position: | chr6:4692137-4691720 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 3.00018e-42 | 
| Alignm gaps (pig, cow): | 31, 280 | 
| Conread position: | 739-1112 | 
| Cow position: | chr6:19264652-19264266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 268 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 28, 79 | 
| Conread position: | 740-1128 | 
| Cow position: | chr6:67574256-67574641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 408 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 25, 72 | 
| Conread position: | 742-1116 | 
| Cow position: | chr6:9219124-9219502 (view UCSC Genome Browser custom track) | 
| Alignm length: | 392 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 27, 84 | 
| Conread position: | 743-1112 | 
| Cow position: | chr6:46283146-46282757 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 26, 79 | 
| Conread position: | 744-1066 | 
| Cow position: | chr6:57571326-57571663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 226 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 25, 84 | 
| Conread position: | 744-1128 | 
| Cow position: | chr6:17817132-17816743 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 257 | 
| Alignm E-value: | 3e-32 | 
| Alignm gaps (pig, cow): | 35, 55 | 
| Conread position: | 748-1142 | 
| Cow position: | chr6:62669735-62670135 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 33, 57 | 
| Conread position: | 754-1047 | 
| Cow position: | chr6:16316178-16316485 (view UCSC Genome Browser custom track) | 
| Alignm length: | 312 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 30, 8 | 
| Conread position: | 754-1113 | 
| Cow position: | chr6:38640099-38640467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 378 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 32, 8 | 
| Conread position: | 754-1125 | 
| Cow position: | chr6:48988305-48988682 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 33, 8 | 
| Conread position: | 754-1128 | 
| Cow position: | chr6:45388198-45388572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 34, 8 | 
| Conread position: | 754-1137 | 
| Cow position: | chr6:48010653-48010264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 34, 8 | 
| Conread position: | 755-1137 | 
| Cow position: | chr6:30123323-30122907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 32, 5 | 
| Conread position: | 758-1127 | 
| Cow position: | chr6:19045498-19045879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 24, 142 | 
| Conread position: | 760-1105 | 
| Cow position: | chr6:43135071-43134713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 86 | 
| Conread position: | 760-1120 | 
| Cow position: | chr6:38609841-38610216 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 251 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 28, 134 | 
| Conread position: | 760-1127 | 
| Cow position: | chr6:4559430-4559053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 387 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 19, 126 | 
| Conread position: | 761-1148 | 
| Cow position: | chr6:23402115-23401723 (view UCSC Genome Browser custom track) | 
| Alignm length: | 405 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 26, 49 | 
| Conread position: | 765-1068 | 
| Cow position: | chr6:36189575-36189887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 20, 136 | 
| Conread position: | 765-1116 | 
| Cow position: | chr6:50467013-50467377 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 25, 106 | 
| Conread position: | 765-1127 | 
| Cow position: | chr6:17313612-17313989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 382 | 
| Alignm identity: | 262 | 
| Alignm E-value: | 7.00005e-41 | 
| Alignm gaps (pig, cow): | 22, 45 | 
| Conread position: | 768-1104 | 
| Cow position: | chr6:16261667-16262008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 22, 117 | 
| Conread position: | 768-1126 | 
| Cow position: | chr6:25615221-25614841 (view UCSC Genome Browser custom track) | 
| Alignm length: | 384 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 24, 125 | 
| Conread position: | 770-1127 | 
| Cow position: | chr6:62371293-62370937 (view UCSC Genome Browser custom track) | 
| Alignm length: | 374 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 45, 117 | 
| Conread position: | 774-1134 | 
| Cow position: | chr6:60118042-60118398 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 33, 7 | 
| Conread position: | 777-1126 | 
| Cow position: | chr6:53841604-53841255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 85, 37 | 
| Conread position: | 778-1127 | 
| Cow position: | chr6:58370649-58370997 (view UCSC Genome Browser custom track) | 
| Alignm length: | 362 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 54, 162 | 
| Conread position: | 779-1064 | 
| Cow position: | chr6:21514722-21514422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 301 | 
| Alignm identity: | 207 | 
| Alignm E-value: | 3e-33 | 
| Alignm gaps (pig, cow): | 27, 0 | 
| Conread position: | 779-1119 | 
| Cow position: | chr6:22850348-22850010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 58, 79 | 
| Conread position: | 779-1124 | 
| Cow position: | chr6:21399856-21399507 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 231 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 35, 79 | 
| Conread position: | 779-1128 | 
| Cow position: | chr6:59603310-59602964 (view UCSC Genome Browser custom track) | 
| Alignm length: | 363 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 58, 36 | 
| Conread position: | 779-1133 | 
| Cow position: | chr6:7119713-7119376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 360 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 83, 37 | 
| Conread position: | 779-1146 | 
| Cow position: | chr6:43345549-43345171 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 29, 120 | 
| Conread position: | 782-1060 | 
| Cow position: | chr6:3592301-3592579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 80, 159 | 
| Conread position: | 783-1068 | 
| Cow position: | chr6:17794855-17794572 (view UCSC Genome Browser custom track) | 
| Alignm length: | 292 | 
| Alignm identity: | 190 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 79, 43 | 
| Conread position: | 783-1116 | 
| Cow position: | chr6:10039622-10039965 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 237 | 
| Alignm E-value: | 6e-39 | 
| Alignm gaps (pig, cow): | 38, 99 | 
| Conread position: | 783-1143 | 
| Cow position: | chr6:54854150-54854515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 77, 48 | 
| Conread position: | 784-1097 | 
| Cow position: | chr6:9719021-9718697 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 222 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 33, 5 | 
| Conread position: | 784-1124 | 
| Cow position: | chr6:54208237-54207885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 355 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 30, 15 | 
| Conread position: | 786-1116 | 
| Cow position: | chr6:21234948-21235286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 343 | 
| Alignm identity: | 223 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 52, 28 | 
| Conread position: | 787-1124 | 
| Cow position: | chr6:44867636-44867301 (view UCSC Genome Browser custom track) | 
| Alignm length: | 347 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 19, 34 | 
| Conread position: | 788-1137 | 
| Cow position: | chr6:62929402-62929759 (view UCSC Genome Browser custom track) | 
| Alignm length: | 361 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 18, 51 | 
| Conread position: | 800-1159 | 
| Cow position: | chr6:26155074-26155421 (view UCSC Genome Browser custom track) | 
| Alignm length: | 371 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 24, 50 | 
| Conread position: | 801-1107 | 
| Cow position: | chr6:22525250-22525555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 318 | 
| Alignm identity: | 213 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 36, 92 | 
| Conread position: | 803-1128 | 
| Cow position: | chr6:22985937-22985614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 220 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 34, 12 | 
| Conread position: | 805-1113 | 
| Cow position: | chr6:41375693-41376005 (view UCSC Genome Browser custom track) | 
| Alignm length: | 320 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 4e-35 | 
| Alignm gaps (pig, cow): | 32, 9 | 
| Conread position: | 805-1127 | 
| Cow position: | chr6:5330337-5330663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 333 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 57, 32 | 
| Conread position: | 805-1144 | 
| Cow position: | chr6:33509712-33510057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 354 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 32, 83 | 
| Conread position: | 805-1147 | 
| Cow position: | chr6:24536618-24536257 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 248 | 
| Alignm E-value: | 3e-34 | 
| Alignm gaps (pig, cow): | 32, 14 | 
| Conread position: | 806-1078 | 
| Cow position: | chr6:2153668-2153395 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 56, 14 | 
| Conread position: | 806-1125 | 
| Cow position: | chr6:8599926-8600255 (view UCSC Genome Browser custom track) | 
| Alignm length: | 339 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 9, 78 | 
| Conread position: | 807-1099 | 
| Cow position: | chr6:55205388-55205085 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 30, 83 | 
| Conread position: | 807-1143 | 
| Cow position: | chr6:37395483-37395134 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 28, 9 | 
| Conread position: | 809-1128 | 
| Cow position: | chr6:62437342-62437667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 327 | 
| Alignm identity: | 209 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 14, 313 | 
| Conread position: | 814-1105 | 
| Cow position: | chr6:18118121-18117823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 21, 156 | 
| Conread position: | 814-1123 | 
| Cow position: | chr6:32043783-32044096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 319 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 22, 49 | 
| Conread position: | 814-1133 | 
| Cow position: | chr6:24339215-24339545 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 4e-36 | 
| Alignm gaps (pig, cow): | 28, 100 | 
| Conread position: | 815-1087 | 
| Cow position: | chr6:67643759-67643479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 22, 95 | 
| Conread position: | 815-1148 | 
| Cow position: | chr6:694215-693872 (view UCSC Genome Browser custom track) | 
| Alignm length: | 351 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 23, 73 | 
| Conread position: | 820-1124 | 
| Cow position: | chr6:5845235-5844921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 210 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 17, 63 | 
| Conread position: | 826-1125 | 
| Cow position: | chr6:55417581-55417285 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 31, 60 | 
| Conread position: | 839-1105 | 
| Cow position: | chr6:56986686-56986420 (view UCSC Genome Browser custom track) | 
| Alignm length: | 274 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 2e-31 | 
| Alignm gaps (pig, cow): | 22, 47 | 
| Conread position: | 839-1127 | 
| Cow position: | chr6:2078861-2078567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 300 | 
| Alignm identity: | 201 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 23, 199 | 
| Conread position: | 839-1127 | 
| Cow position: | chr6:51530227-51529938 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 215 | 
| Alignm E-value: | 5e-38 | 
| Alignm gaps (pig, cow): | 18, 48 | 
| Conread position: | 839-1138 | 
| Cow position: | chr6:3350978-3351290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 315 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 22, 239 | 
| Conread position: | 842-1143 | 
| Cow position: | chr6:94228-93934 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 200 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 20, 35 | 
| Conread position: | 843-1103 | 
| Cow position: | chr6:2584904-2585167 (view UCSC Genome Browser custom track) | 
| Alignm length: | 270 | 
| Alignm identity: | 185 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 19, 51 | 
| Conread position: | 843-1103 | 
| Cow position: | chr6:68816129-68816396 (view UCSC Genome Browser custom track) | 
| Alignm length: | 272 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 19, 47 | 
| Conread position: | 843-1137 | 
| Cow position: | chr6:67728333-67728636 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 16, 44 | 
| Conread position: | 853-1154 | 
| Cow position: | chr6:50862916-50863223 (view UCSC Genome Browser custom track) | 
| Alignm length: | 309 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 82, 272 | 
| Conread position: | 855-1127 | 
| Cow position: | chr6:35319158-35318884 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 12, 57 | 
| Conread position: | 858-1127 | 
| Cow position: | chr6:35727822-35728098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 281 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 7, 12 | 
| Conread position: | 859-1068 | 
| Cow position: | chr6:55502747-55502960 (view UCSC Genome Browser custom track) | 
| Alignm length: | 216 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 42, 26 | 
| Conread position: | 859-1116 | 
| Cow position: | chr6:23025131-23024859 (view UCSC Genome Browser custom track) | 
| Alignm length: | 273 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 19, 0 | 
| Conread position: | 859-1116 | 
| Cow position: | chr6:47958794-47959044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 260 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 53, 78 | 
| Conread position: | 859-1123 | 
| Cow position: | chr6:41014995-41014726 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 76, 18 | 
| Conread position: | 859-1123 | 
| Cow position: | chr6:42567473-42567741 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 78, 18 | 
| Conread position: | 859-1126 | 
| Cow position: | chr6:36809226-36808953 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 63, 51 | 
| Conread position: | 859-1126 | 
| Cow position: | chr6:57089178-57089453 (view UCSC Genome Browser custom track) | 
| Alignm length: | 278 | 
| Alignm identity: | 192 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 76, 178 | 
| Conread position: | 859-1127 | 
| Cow position: | chr6:53145701-53145430 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 78, 51 | 
| Conread position: | 859-1128 | 
| Cow position: | chr6:12964834-12965105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 76, 32 | 
| Conread position: | 859-1138 | 
| Cow position: | chr6:18608833-18608549 (view UCSC Genome Browser custom track) | 
| Alignm length: | 291 | 
| Alignm identity: | 199 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 46, 17 | 
| Conread position: | 860-1143 | 
| Cow position: | chr6:64429214-64428930 (view UCSC Genome Browser custom track) | 
| Alignm length: | 290 | 
| Alignm identity: | 195 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 38, 17 | 
| Conread position: | 860-1148 | 
| Cow position: | chr6:47778856-47779147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 294 | 
| Alignm identity: | 189 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 75, 266 | 
| Conread position: | 861-1116 | 
| Cow position: | chr6:67451389-67451133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 262 | 
| Alignm identity: | 175 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 42, 26 | 
| Conread position: | 862-1116 | 
| Cow position: | chr6:20219794-20219540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 48, 96 | 
| Conread position: | 864-1135 | 
| Cow position: | chr6:32453373-32453646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 280 | 
| Alignm identity: | 188 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 71, 35 | 
| Conread position: | 865-1104 | 
| Cow position: | chr6:48379628-48379384 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 8e-32 | 
| Alignm gaps (pig, cow): | 15, 27 | 
| Conread position: | 868-1133 | 
| Cow position: | chr6:63065816-63066096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 284 | 
| Alignm identity: | 191 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 33, 9 | 
| Conread position: | 870-1127 | 
| Cow position: | chr6:54831472-54831728 (view UCSC Genome Browser custom track) | 
| Alignm length: | 263 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 65, 12 | 
| Conread position: | 873-1112 | 
| Cow position: | chr6:12761268-12761515 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 23, 112 | 
| Conread position: | 874-1119 | 
| Cow position: | chr6:55297098-55296850 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 63, 13 | 
| Conread position: | 885-1126 | 
| Cow position: | chr6:58304414-58304662 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 174 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 11, 153 | 
| Conread position: | 886-1125 | 
| Cow position: | chr6:8369429-8369673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 248 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 9, 60 | 
| Conread position: | 893-1124 | 
| Cow position: | chr6:57079436-57079673 (view UCSC Genome Browser custom track) | 
| Alignm length: | 238 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 895-1068 | 
| Cow position: | chr6:21467248-21467078 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 40, 63 | 
| Conread position: | 900-1113 | 
| Cow position: | chr6:58725391-58725603 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 37, 65 | 
| Conread position: | 905-1142 | 
| Cow position: | chr6:16380570-16380813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 30, 0 | 
| Conread position: | 906-1065 | 
| Cow position: | chr6:8731435-8731599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 21, 94 | 
| Conread position: | 906-1138 | 
| Cow position: | chr6:66947791-66947561 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 164, 31 | 
| Conread position: | 909-1066 | 
| Cow position: | chr6:31865128-31865280 (view UCSC Genome Browser custom track) | 
| Alignm length: | 158 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 22, 0 | 
| Conread position: | 909-1112 | 
| Cow position: | chr6:48435864-48436065 (view UCSC Genome Browser custom track) | 
| Alignm length: | 208 | 
| Alignm identity: | 153 | 
| Alignm E-value: | 7e-30 | 
| Alignm gaps (pig, cow): | 161, 27 | 
| Conread position: | 909-1123 | 
| Cow position: | chr6:42728675-42728892 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 26, 99 | 
| Conread position: | 909-1124 | 
| Cow position: | chr6:66259759-66259984 (view UCSC Genome Browser custom track) | 
| Alignm length: | 228 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 26, 45 | 
| Conread position: | 909-1134 | 
| Cow position: | chr6:50771329-50771104 (view UCSC Genome Browser custom track) | 
| Alignm length: | 231 | 
| Alignm identity: | 172 | 
| Alignm E-value: | 5e-37 | 
| Alignm gaps (pig, cow): | 26, 33 | 
| Conread position: | 909-1145 | 
| Cow position: | chr6:54846249-54846008 (view UCSC Genome Browser custom track) | 
| Alignm length: | 242 | 
| Alignm identity: | 163 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 26, 0 | 
| Conread position: | 909-1148 | 
| Cow position: | chr6:50269653-50269411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 161 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 37, 27 | 
| Conread position: | 910-1137 | 
| Cow position: | chr6:17704862-17705094 (view UCSC Genome Browser custom track) | 
| Alignm length: | 233 | 
| Alignm identity: | 154 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 25, 0 | 
| Conread position: | 910-1138 | 
| Cow position: | chr6:16090934-16091158 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 24, 115 | 
| Conread position: | 912-1124 | 
| Cow position: | chr6:22876898-22876681 (view UCSC Genome Browser custom track) | 
| Alignm length: | 220 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 42, 24 | 
| Conread position: | 913-1125 | 
| Cow position: | chr6:23058244-23058462 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 913-1137 | 
| Cow position: | chr6:8688813-8688591 (view UCSC Genome Browser custom track) | 
| Alignm length: | 230 | 
| Alignm identity: | 162 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 22, 119 | 
| Conread position: | 921-1122 | 
| Cow position: | chr6:15058418-15058619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 203 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 14, 189 | 
| Conread position: | 921-1124 | 
| Cow position: | chr6:55044600-55044394 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 14, 91 | 
| Conread position: | 921-1124 | 
| Cow position: | chr6:62724597-62724805 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 921-1127 | 
| Cow position: | chr6:24776180-24776388 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 14, 114 | 
| Conread position: | 921-1127 | 
| Cow position: | chr6:42483457-42483666 (view UCSC Genome Browser custom track) | 
| Alignm length: | 213 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 14, 32 | 
| Conread position: | 921-1137 | 
| Cow position: | chr6:15587553-15587333 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 150 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 14, 202 | 
| Conread position: | 921-1137 | 
| Cow position: | chr6:56061702-56061923 (view UCSC Genome Browser custom track) | 
| Alignm length: | 222 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 16, 0 | 
| Conread position: | 922-1116 | 
| Cow position: | chr6:36225151-36225349 (view UCSC Genome Browser custom track) | 
| Alignm length: | 200 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 13, 106 | 
| Conread position: | 922-1120 | 
| Cow position: | chr6:19563441-19563236 (view UCSC Genome Browser custom track) | 
| Alignm length: | 206 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 13, 0 | 
| Conread position: | 922-1125 | 
| Cow position: | chr6:37827901-37827701 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 102, 24 | 
| Conread position: | 922-1130 | 
| Cow position: | chr6:13742031-13742240 (view UCSC Genome Browser custom track) | 
| Alignm length: | 214 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 13, 58 | 
| Conread position: | 922-1141 | 
| Cow position: | chr6:55548491-55548271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 224 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 13, 125 | 
| Conread position: | 923-1116 | 
| Cow position: | chr6:3330040-3330235 (view UCSC Genome Browser custom track) | 
| Alignm length: | 198 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 147, 19 | 
| Conread position: | 926-1116 | 
| Cow position: | chr6:57467646-57467838 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 144, 15 | 
| Conread position: | 928-1068 | 
| Cow position: | chr6:69153458-69153599 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 107 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 7, 0 | 
| Conread position: | 930-1104 | 
| Cow position: | chr6:48792831-48793007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 138, 12 | 
| Conread position: | 931-1117 | 
| Cow position: | chr6:50883623-50883439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 139, 100 | 
| Conread position: | 936-1066 | 
| Cow position: | chr6:58076451-58076581 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 936-1104 | 
| Cow position: | chr6:61644801-61644629 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 4e-25 | 
| Alignm gaps (pig, cow): | 132, 0 | 
| Conread position: | 936-1116 | 
| Cow position: | chr6:58697574-58697390 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 134, 0 | 
| Conread position: | 936-1125 | 
| Cow position: | chr6:53346032-53346214 (view UCSC Genome Browser custom track) | 
| Alignm length: | 190 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 936-1127 | 
| Cow position: | chr6:57299816-57300022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 207 | 
| Alignm identity: | 146 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 936-1148 | 
| Cow position: | chr6:18440420-18440212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 134, 156 | 
| Conread position: | 936-1155 | 
| Cow position: | chr6:21052392-21052164 (view UCSC Genome Browser custom track) | 
| Alignm length: | 229 | 
| Alignm identity: | 160 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 938-1120 | 
| Cow position: | chr6:54820891-54821076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 187 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-25 | 
| Alignm gaps (pig, cow): | 132, 181 | 
| Conread position: | 949-1116 | 
| Cow position: | chr6:53811653-53811825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 94, 0 | 
| Conread position: | 951-1137 | 
| Cow position: | chr6:62805715-62805910 (view UCSC Genome Browser custom track) | 
| Alignm length: | 196 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 119, 0 | 
| Conread position: | 952-1120 | 
| Cow position: | chr6:5445741-5445911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 118, 15 | 
| Conread position: | 956-1116 | 
| Cow position: | chr6:59687735-59687571 (view UCSC Genome Browser custom track) | 
| Alignm length: | 165 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 114, 0 | 
| Conread position: | 956-1124 | 
| Cow position: | chr6:56581981-56581807 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 958-1137 | 
| Cow position: | chr6:28559617-28559801 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-24 | 
| Alignm gaps (pig, cow): | 52, 73 | 
| Conread position: | 959-1116 | 
| Cow position: | chr6:16627815-16627968 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 123 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 124, 81 | 
| Conread position: | 959-1116 | 
| Cow position: | chr6:44544068-44543908 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 6e-29 | 
| Alignm gaps (pig, cow): | 111, 72 | 
| Conread position: | 959-1116 | 
| Cow position: | chr6:50682217-50682060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 110, 13 | 
| Conread position: | 959-1120 | 
| Cow position: | chr6:19225303-19225149 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 55, 0 | 
| Conread position: | 959-1120 | 
| Cow position: | chr6:35985056-35984891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 959-1123 | 
| Cow position: | chr6:32006374-32006211 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 111, 77 | 
| Conread position: | 959-1124 | 
| Cow position: | chr6:16411691-16411860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 959-1124 | 
| Cow position: | chr6:43906603-43906434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 959-1124 | 
| Cow position: | chr6:49685898-49686067 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 959-1127 | 
| Cow position: | chr6:19936489-19936318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-30 | 
| Alignm gaps (pig, cow): | 111, 52 | 
| Conread position: | 959-1127 | 
| Cow position: | chr6:54406719-54406555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 173 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 111, 72 | 
| Conread position: | 959-1129 | 
| Cow position: | chr6:26408424-26408246 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 1e-26 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 959-1130 | 
| Cow position: | chr6:24903497-24903324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 111, 159 | 
| Conread position: | 959-1135 | 
| Cow position: | chr6:8187109-8186929 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 139 | 
| Alignm E-value: | 1e-33 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 959-1137 | 
| Cow position: | chr6:62224502-62224683 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 69, 133 | 
| Conread position: | 959-1140 | 
| Cow position: | chr6:54840427-54840237 (view UCSC Genome Browser custom track) | 
| Alignm length: | 191 | 
| Alignm identity: | 140 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 96, 0 | 
| Conread position: | 959-1142 | 
| Cow position: | chr6:34076242-34076427 (view UCSC Genome Browser custom track) | 
| Alignm length: | 193 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 31, 83 | 
| Conread position: | 959-1145 | 
| Cow position: | chr6:14150299-14150117 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 125, 113 | 
| Conread position: | 959-1153 | 
| Cow position: | chr6:55060943-55061146 (view UCSC Genome Browser custom track) | 
| Alignm length: | 204 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 84, 0 | 
| Conread position: | 960-1137 | 
| Cow position: | chr6:59101240-59101058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 110, 0 | 
| Conread position: | 961-1119 | 
| Cow position: | chr6:28562086-28561926 (view UCSC Genome Browser custom track) | 
| Alignm length: | 163 | 
| Alignm identity: | 121 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 109, 51 | 
| Conread position: | 961-1127 | 
| Cow position: | chr6:16137688-16137517 (view UCSC Genome Browser custom track) | 
| Alignm length: | 172 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 9e-33 | 
| Alignm gaps (pig, cow): | 56, 0 | 
| Conread position: | 961-1134 | 
| Cow position: | chr6:14152808-14152632 (view UCSC Genome Browser custom track) | 
| Alignm length: | 179 | 
| Alignm identity: | 128 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 78, 131 | 
| Conread position: | 961-1134 | 
| Cow position: | chr6:45159975-45159798 (view UCSC Genome Browser custom track) | 
| Alignm length: | 178 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 1e-34 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 961-1137 | 
| Cow position: | chr6:53732064-53732244 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 129 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 82, 159 | 
| Conread position: | 961-1138 | 
| Cow position: | chr6:36163826-36164007 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 127 | 
| Alignm E-value: | 3e-22 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 961-1140 | 
| Cow position: | chr6:32336114-32336298 (view UCSC Genome Browser custom track) | 
| Alignm length: | 189 | 
| Alignm identity: | 135 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 66, 153 | 
| Conread position: | 961-1143 | 
| Cow position: | chr6:66293567-66293751 (view UCSC Genome Browser custom track) | 
| Alignm length: | 186 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-28 | 
| Alignm gaps (pig, cow): | 112, 117 | 
| Conread position: | 961-1148 | 
| Cow position: | chr6:55014961-55015154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 195 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 66, 137 | 
| Conread position: | 962-1116 | 
| Cow position: | chr6:3936866-3937026 (view UCSC Genome Browser custom track) | 
| Alignm length: | 161 | 
| Alignm identity: | 118 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 75, 0 | 
| Conread position: | 966-1120 | 
| Cow position: | chr6:26764740-26764579 (view UCSC Genome Browser custom track) | 
| Alignm length: | 162 | 
| Alignm identity: | 120 | 
| Alignm E-value: | 3e-23 | 
| Alignm gaps (pig, cow): | 73, 0 | 
| Conread position: | 966-1120 | 
| Cow position: | chr6:55945876-55945713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 122 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 61, 0 | 
| Conread position: | 966-1125 | 
| Cow position: | chr6:14263802-14263641 (view UCSC Genome Browser custom track) | 
| Alignm length: | 164 | 
| Alignm identity: | 119 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 104, 27 | 
| Conread position: | 966-1146 | 
| Cow position: | chr6:12099599-12099422 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 134 | 
| Alignm E-value: | 9e-23 | 
| Alignm gaps (pig, cow): | 102, 69 | 
| Conread position: | 966-1148 | 
| Cow position: | chr6:31928724-31928911 (view UCSC Genome Browser custom track) | 
| Alignm length: | 188 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 5e-27 | 
| Alignm gaps (pig, cow): | 104, 0 | 
| Conread position: | 967-1128 | 
| Cow position: | chr6:57935484-57935325 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 103, 16 | 
| Conread position: | 967-1137 | 
| Cow position: | chr6:54828234-54828060 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 133 | 
| Alignm E-value: | 7e-31 | 
| Alignm gaps (pig, cow): | 103, 0 | 
| Conread position: | 968-1136 | 
| Cow position: | chr6:16016123-16016296 (view UCSC Genome Browser custom track) | 
| Alignm length: | 175 | 
| Alignm identity: | 132 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 100, 52 | 
| Conread position: | 975-1149 | 
| Cow position: | chr6:55196309-55196491 (view UCSC Genome Browser custom track) | 
| Alignm length: | 183 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 58, 0 | 
| Conread position: | 979-1124 | 
| Cow position: | chr6:23381568-23381419 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 4e-26 | 
| Alignm gaps (pig, cow): | 91, 0 | 
| Conread position: | 983-1135 | 
| Cow position: | chr6:57143592-57143434 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 116 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 87, 0 | 
| Conread position: | 996-1122 | 
| Cow position: | chr6:65831478-65831608 (view UCSC Genome Browser custom track) | 
| Alignm length: | 131 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 8e-22 | 
| Alignm gaps (pig, cow): | 74, 0 | 
| Conread position: | 1006-1136 | 
| Cow position: | chr6:456824-456691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 135 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 8e-21 | 
| Alignm gaps (pig, cow): | 58, 85 | 
Show alignments to all cow chromosomes.
