Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8049N19.3
        

               Conread position:
               262-782
               

               Cow position:
               chrX:28556088-28555555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               535
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               283, 291
               

               Conread position:
               297-613
               

               Cow position:
               chrX:21459221-21458907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 27
               

               Conread position:
               301-478
               

               Cow position:
               chrX:44206346-44206525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               11, 82
               

               Conread position:
               302-541
               

               Cow position:
               chrX:32194711-32194458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               176
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               304-515
               

               Cow position:
               chrX:32584545-32584329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               304-777
               

               Cow position:
               chrX:24441853-24441372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               494
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 104
               

               Conread position:
               304-785
               

               Cow position:
               chrX:9898955-9898459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 215
               

               Conread position:
               304-786
               

               Cow position:
               chrX:18244368-18244870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               503
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               305-780
               

               Cow position:
               chrX:18950349-18949867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 79
               

               Conread position:
               305-782
               

               Cow position:
               chrX:9153747-9154240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 250
               

               Conread position:
               305-782
               

               Cow position:
               chrX:30531640-30531148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               498
               

               Alignm identity:
               369
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 130
               

               Conread position:
               306-527
               

               Cow position:
               chrX:29722607-29722824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               170
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               307-659
               

               Cow position:
               chrX:32329416-32329765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 0
               

               Conread position:
               309-1116
               

               Cow position:
               chrX:40827352-40826522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               841
               

               Alignm identity:
               584
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 76
               

               Conread position:
               311-693
               

               Cow position:
               chrX:23382791-23382391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               249
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               311-734
               

               Cow position:
               chrX:3628169-3628600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               279
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 71
               

               Conread position:
               311-771
               

               Cow position:
               chrX:23280403-23280873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 256
               

               Conread position:
               311-780
               

               Cow position:
               chrX:2664405-2664887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 241
               

               Conread position:
               312-663
               

               Cow position:
               chrX:9911376-9911019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               240, 36
               

               Conread position:
               319-761
               

               Cow position:
               chrX:24826739-24827183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 5
               

               Conread position:
               319-780
               

               Cow position:
               chrX:15780985-15781459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 233
               

               Conread position:
               328-680
               

               Cow position:
               chrX:10077954-10078307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               32, 16
               

               Conread position:
               329-471
               

               Cow position:
               chrX:19657911-19658053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               119
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               329-479
               

               Cow position:
               chrX:32071267-32071116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               329-515
               

               Cow position:
               chrX:4177233-4177421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               169, 0
               

               Conread position:
               329-527
               

               Cow position:
               chrX:21060884-21061084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               13, 162
               

               Conread position:
               329-549
               

               Cow position:
               chrX:20544706-20544471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               329-691
               

               Cow position:
               chrX:27485817-27486187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 0
               

               Conread position:
               329-693
               

               Cow position:
               chrX:27117378-27117745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               192, 30
               

               Conread position:
               329-718
               

               Cow position:
               chrX:33631568-33631967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 206
               

               Conread position:
               329-780
               

               Cow position:
               chrX:22811303-22811763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               338, 63
               

               Conread position:
               329-896
               

               Cow position:
               chrX:42462336-42461739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               601
               

               Alignm identity:
               456
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 61
               

               Conread position:
               329-1028
               

               Cow position:
               chrX:10412559-10411847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               735
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 54
               

               Conread position:
               329-1138
               

               Cow position:
               chrX:16711369-16712212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               854
               

               Alignm identity:
               574
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 165
               

               Conread position:
               331-526
               

               Cow position:
               chrX:23022729-23022924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               331-527
               

               Cow position:
               chrX:15486244-15486048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               331-693
               

               Cow position:
               chrX:25575375-25575742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 0
               

               Conread position:
               331-787
               

               Cow position:
               chrX:15120469-15120003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               332, 53
               

               Conread position:
               332-662
               

               Cow position:
               chrX:5246664-5247001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               332-1127
               

               Cow position:
               chrX:27443141-27442299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               852
               

               Alignm identity:
               606
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 69
               

               Conread position:
               333-473
               

               Cow position:
               chrX:20888191-20888051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               141
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-479
               

               Cow position:
               chrX:20707912-20708057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               333-479
               

               Cow position:
               chrX:48370277-48370429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               333-482
               

               Cow position:
               chrX:24109189-24109041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               333-488
               

               Cow position:
               chrX:16688686-16688841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-511
               

               Cow position:
               chrX:631202-631024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               40, 26
               

               Conread position:
               333-515
               

               Cow position:
               chrX:22869487-22869305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               157, 58
               

               Conread position:
               333-515
               

               Cow position:
               chrX:25451740-25451922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               48, 99
               

               Conread position:
               333-515
               

               Cow position:
               chrX:30089635-30089452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               49, 92
               

               Conread position:
               333-520
               

               Cow position:
               chrX:21565558-21565744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               333-524
               

               Cow position:
               chrX:20445729-20445540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               333-526
               

               Cow position:
               chrX:40365325-40365133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               151
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               333-533
               

               Cow position:
               chrX:28156953-28157151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               161
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               333-536
               

               Cow position:
               chrX:25360980-25361182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               333-539
               

               Cow position:
               chrX:2300298-2300503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               197, 0
               

               Conread position:
               333-539
               

               Cow position:
               chrX:12095167-12094961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-540
               

               Cow position:
               chrX:18455364-18455157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               162
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               142, 80
               

               Conread position:
               333-540
               

               Cow position:
               chrX:33884567-33884776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               129, 40
               

               Conread position:
               333-555
               

               Cow position:
               chrX:4632602-4632386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               333-557
               

               Cow position:
               chrX:22125449-22125224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               333-569
               

               Cow position:
               chrX:42010453-42010687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 28
               

               Conread position:
               333-579
               

               Cow position:
               chrX:26764674-26764428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-581
               

               Cow position:
               chrX:22871532-22871780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               180
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               103, 49
               

               Conread position:
               333-590
               

               Cow position:
               chrX:30060306-30060563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-591
               

               Cow position:
               chrX:487955-488220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 46
               

               Conread position:
               333-595
               

               Cow position:
               chrX:40450213-40449949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               222, 100
               

               Conread position:
               333-621
               

               Cow position:
               chrX:20766535-20766826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               164, 30
               

               Conread position:
               333-629
               

               Cow position:
               chrX:18194108-18194404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-629
               

               Cow position:
               chrX:23452027-23451743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 109
               

               Conread position:
               333-639
               

               Cow position:
               chrX:10960077-10960389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 27
               

               Conread position:
               333-644
               

               Cow position:
               chrX:18711954-18712267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               221, 41
               

               Conread position:
               333-651
               

               Cow position:
               chrX:9854691-9855015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 0
               

               Conread position:
               333-651
               

               Cow position:
               chrX:42499656-42499329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 0
               

               Conread position:
               333-655
               

               Cow position:
               chrX:20726178-20726500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               333-658
               

               Cow position:
               chrX:24174534-24174206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 64
               

               Conread position:
               333-663
               

               Cow position:
               chrX:26749461-26749125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 162
               

               Conread position:
               333-663
               

               Cow position:
               chrX:34543184-34543511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 61
               

               Conread position:
               333-668
               

               Cow position:
               chrX:34993589-34993929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 114
               

               Conread position:
               333-671
               

               Cow position:
               chrX:36975258-36975600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               333-674
               

               Cow position:
               chrX:25816836-25816496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 20
               

               Conread position:
               333-676
               

               Cow position:
               chrX:6279188-6278852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               333-676
               

               Cow position:
               chrX:17610041-17609693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               235
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               58, 88
               

               Conread position:
               333-680
               

               Cow position:
               chrX:13889254-13889605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               245
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               64, 56
               

               Conread position:
               333-680
               

               Cow position:
               chrX:15038394-15038035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               333-682
               

               Cow position:
               chrX:2701419-2701066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 286
               

               Conread position:
               333-682
               

               Cow position:
               chrX:6202925-6203277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 159
               

               Conread position:
               333-682
               

               Cow position:
               chrX:17230924-17231266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               59, 79
               

               Conread position:
               333-683
               

               Cow position:
               chrX:32430757-32431098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               333-685
               

               Cow position:
               chrX:21501036-21501392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               241
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               227, 185
               

               Conread position:
               333-685
               

               Cow position:
               chrX:38999321-38999669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 93
               

               Conread position:
               333-688
               

               Cow position:
               chrX:7572799-7573155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 46
               

               Conread position:
               333-690
               

               Cow position:
               chrX:26752505-26752143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 346
               

               Conread position:
               333-693
               

               Cow position:
               chrX:14408032-14407669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               331, 0
               

               Conread position:
               333-693
               

               Cow position:
               chrX:15574468-15574105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               227
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               237, 210
               

               Conread position:
               333-693
               

               Cow position:
               chrX:17891957-17892324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               333-693
               

               Cow position:
               chrX:36794412-36794775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 0
               

               Conread position:
               333-693
               

               Cow position:
               chrX:37134115-37133753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 87
               

               Conread position:
               333-708
               

               Cow position:
               chrX:23038579-23038202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 373
               

               Conread position:
               333-720
               

               Cow position:
               chrX:24482951-24482564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               326, 87
               

               Conread position:
               333-725
               

               Cow position:
               chrX:31202259-31202652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 85
               

               Conread position:
               333-763
               

               Cow position:
               chrX:24292261-24291823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               172, 237
               

               Conread position:
               333-763
               

               Cow position:
               chrX:27977413-27976970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               333-766
               

               Cow position:
               chrX:28542475-28542035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               187, 82
               

               Conread position:
               333-766
               

               Cow position:
               chrX:41049533-41049977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 41
               

               Conread position:
               333-767
               

               Cow position:
               chrX:27450632-27450158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 46
               

               Conread position:
               333-771
               

               Cow position:
               chrX:23387120-23386680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 90
               

               Conread position:
               333-771
               

               Cow position:
               chrX:23396025-23396465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 90
               

               Conread position:
               333-776
               

               Cow position:
               chrX:40545204-40544734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               472
               

               Alignm identity:
               351
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 232
               

               Conread position:
               333-777
               

               Cow position:
               chrX:4905572-4905114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               333-777
               

               Cow position:
               chrX:22600997-22600542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 136
               

               Conread position:
               333-777
               

               Cow position:
               chrX:38052014-38051559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 432
               

               Conread position:
               333-779
               

               Cow position:
               chrX:30919973-30919515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 87
               

               Conread position:
               333-779
               

               Cow position:
               chrX:34840353-34839902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 51
               

               Conread position:
               333-780
               

               Cow position:
               chrX:7551385-7550918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               333-780
               

               Cow position:
               chrX:16853972-16853511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               333-780
               

               Cow position:
               chrX:18078493-18078032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               333-780
               

               Cow position:
               chrX:30143866-30143407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 323
               

               Conread position:
               333-782
               

               Cow position:
               chrX:23986668-23987124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 23
               

               Conread position:
               333-782
               

               Cow position:
               chrX:34761484-34761946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 219
               

               Conread position:
               333-785
               

               Cow position:
               chrX:30455204-30454739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 0
               

               Conread position:
               333-785
               

               Cow position:
               chrX:41304320-41303864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               464
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 47
               

               Conread position:
               333-786
               

               Cow position:
               chrX:5353885-5353418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 0
               

               Conread position:
               333-786
               

               Cow position:
               chrX:22493425-22493892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 0
               

               Conread position:
               333-786
               

               Cow position:
               chrX:30822935-30823401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 46
               

               Conread position:
               333-786
               

               Cow position:
               chrX:41156729-41157196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 421
               

               Conread position:
               333-787
               

               Cow position:
               chrX:5375776-5376255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               480
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               333-787
               

               Cow position:
               chrX:29915806-29915340 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 47
               

               Conread position:
               333-787
               

               Cow position:
               chrX:30228696-30228225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               473
               

               Alignm identity:
               348
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 291
               

               Conread position:
               333-787
               

               Cow position:
               chrX:35240284-35240750 (view UCSC Genome Browser custom track)
               

               Alignm length:
               469
               

               Alignm identity:
               353
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 45
               

               Conread position:
               333-792
               

               Cow position:
               chrX:38151106-38151578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 88
               

               Conread position:
               333-797
               

               Cow position:
               chrX:23134996-23135462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 45
               

               Conread position:
               333-804
               

               Cow position:
               chrX:33822517-33823012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 30
               

               Conread position:
               333-812
               

               Cow position:
               chrX:29049398-29049881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               493
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 59
               

               Conread position:
               333-818
               

               Cow position:
               chrX:13851907-13852399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               505
               

               Alignm identity:
               329
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               233, 61
               

               Conread position:
               333-819
               

               Cow position:
               chrX:34009165-34009673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 60
               

               Conread position:
               333-823
               

               Cow position:
               chrX:6012687-6012177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               518
               

               Alignm identity:
               360
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 81
               

               Conread position:
               333-823
               

               Cow position:
               chrX:19228651-19228135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 105
               

               Conread position:
               333-825
               

               Cow position:
               chrX:1793750-1793244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               513
               

               Alignm identity:
               330
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               120, 98
               

               Conread position:
               333-830
               

               Cow position:
               chrX:26531377-26531897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               382
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 193
               

               Conread position:
               333-830
               

               Cow position:
               chrX:30180509-30179989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               333-840
               

               Cow position:
               chrX:14908431-14908952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               361
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 17
               

               Conread position:
               333-843
               

               Cow position:
               chrX:37906377-37906913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               371
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               214, 35
               

               Conread position:
               333-851
               

               Cow position:
               chrX:7805795-7806338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               548
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 15
               

               Conread position:
               333-868
               

               Cow position:
               chrX:27095537-27096093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               558
               

               Alignm identity:
               398
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 422
               

               Conread position:
               333-899
               

               Cow position:
               chrX:35288074-35288664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               595
               

               Alignm identity:
               424
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 46
               

               Conread position:
               333-925
               

               Cow position:
               chrX:38438906-38439514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 139
               

               Conread position:
               333-989
               

               Cow position:
               chrX:29942568-29943251 (view UCSC Genome Browser custom track)
               

               Alignm length:
               688
               

               Alignm identity:
               463
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 161
               

               Conread position:
               333-1002
               

               Cow position:
               chrX:6493150-6493847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               700
               

               Alignm identity:
               492
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               340, 562
               

               Conread position:
               333-1027
               

               Cow position:
               chrX:11083192-11082486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               717
               

               Alignm identity:
               530
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               298, 155
               

               Conread position:
               333-1039
               

               Cow position:
               chrX:20801191-20801918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               738
               

               Alignm identity:
               511
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 120
               

               Conread position:
               333-1116
               

               Cow position:
               chrX:10866449-10865642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               819
               

               Alignm identity:
               590
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 94
               

               Conread position:
               333-1123
               

               Cow position:
               chrX:31728881-31729673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               812
               

               Alignm identity:
               582
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 96
               

               Conread position:
               333-1124
               

               Cow position:
               chrX:34564719-34565521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               812
               

               Alignm identity:
               585
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               360, 41
               

               Conread position:
               333-1124
               

               Cow position:
               chrX:41879512-41878701 (view UCSC Genome Browser custom track)
               

               Alignm length:
               819
               

               Alignm identity:
               605
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               336, 302
               

               Conread position:
               333-1124
               

               Cow position:
               chrX:44193022-44192206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               827
               

               Alignm identity:
               596
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 49
               

               Conread position:
               333-1125
               

               Cow position:
               chrX:31488932-31489759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               833
               

               Alignm identity:
               620
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 74
               

               Conread position:
               333-1126
               

               Cow position:
               chrX:23121815-23122629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               836
               

               Alignm identity:
               559
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 75
               

               Conread position:
               333-1137
               

               Cow position:
               chrX:22812480-22813314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               842
               

               Alignm identity:
               612
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               330, 572
               

               Conread position:
               333-1137
               

               Cow position:
               chrX:34554154-34554978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               837
               

               Alignm identity:
               606
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 132
               

               Conread position:
               333-1141
               

               Cow position:
               chrX:30133889-30133073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               845
               

               Alignm identity:
               586
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               334, 55
               

               Conread position:
               334-515
               

               Cow position:
               chrX:18288040-18287865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               334-540
               

               Cow position:
               chrX:21196442-21196646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               195, 12
               

               Conread position:
               335-1000
               

               Cow position:
               chrX:26626278-26625562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               721
               

               Alignm identity:
               513
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 517
               

               Conread position:
               336-515
               

               Cow position:
               chrX:28608592-28608414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               336-540
               

               Cow position:
               chrX:17158407-17158203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               336-669
               

               Cow position:
               chrX:23666604-23666937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 194
               

               Conread position:
               336-692
               

               Cow position:
               chrX:16000057-15999722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 78
               

               Conread position:
               337-508
               

               Cow position:
               chrX:27022236-27022412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               8, 37
               

               Conread position:
               337-692
               

               Cow position:
               chrX:44491010-44490664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               214, 208
               

               Conread position:
               337-693
               

               Cow position:
               chrX:41114618-41114985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               235
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               22, 17
               

               Conread position:
               337-766
               

               Cow position:
               chrX:44019122-44019561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               298
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               138, 44
               

               Conread position:
               337-792
               

               Cow position:
               chrX:24280359-24280826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               471
               

               Alignm identity:
               346
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 56
               

               Conread position:
               337-877
               

               Cow position:
               chrX:31261214-31260645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 157
               

               Conread position:
               338-488
               

               Cow position:
               chrX:26441837-26441687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               338-514
               

               Cow position:
               chrX:14263355-14263179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               338-531
               

               Cow position:
               chrX:15306309-15306116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               156
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               43, 157
               

               Conread position:
               338-555
               

               Cow position:
               chrX:11614117-11614335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               165
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               338-607
               

               Cow position:
               chrX:12033500-12033235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               218, 63
               

               Conread position:
               338-680
               

               Cow position:
               chrX:20131468-20131116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               243
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               47, 347
               

               Conread position:
               338-680
               

               Cow position:
               chrX:24309692-24309355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               233
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               331, 69
               

               Conread position:
               338-766
               

               Cow position:
               chrX:20974477-20974893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               283
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               44, 66
               

               Conread position:
               338-1127
               

               Cow position:
               chrX:41103215-41104042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               835
               

               Alignm identity:
               574
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 35
               

               Conread position:
               339-562
               

               Cow position:
               chrX:40187400-40187625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               339-591
               

               Cow position:
               chrX:25198865-25199122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               52, 34
               

               Conread position:
               339-627
               

               Cow position:
               chrX:1525223-1524933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               164, 109
               

               Conread position:
               339-761
               

               Cow position:
               chrX:37949200-37949633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               287
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               50, 344
               

               Conread position:
               339-823
               

               Cow position:
               chrX:5676266-5675778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               506
               

               Alignm identity:
               327
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               229, 68
               

               Conread position:
               339-880
               

               Cow position:
               chrX:29876637-29876084 (view UCSC Genome Browser custom track)
               

               Alignm length:
               567
               

               Alignm identity:
               410
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 53
               

               Conread position:
               340-534
               

               Cow position:
               chrX:29023487-29023684 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               42, 8
               

               Conread position:
               340-630
               

               Cow position:
               chrX:35260401-35260692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 0
               

               Conread position:
               340-693
               

               Cow position:
               chrX:44367201-44367557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               249
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               53, 33
               

               Conread position:
               340-777
               

               Cow position:
               chrX:1519025-1518566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               300
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               340-782
               

               Cow position:
               chrX:5406483-5406935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               15, 98
               

               Conread position:
               340-782
               

               Cow position:
               chrX:37957922-37958377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 212
               

               Conread position:
               341-509
               

               Cow position:
               chrX:2324132-2324298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               341-559
               

               Cow position:
               chrX:27982944-27982726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               160, 73
               

               Conread position:
               341-767
               

               Cow position:
               chrX:41847108-41846671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 0
               

               Conread position:
               341-773
               

               Cow position:
               chrX:30139358-30138913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               322, 0
               

               Conread position:
               341-1133
               

               Cow position:
               chrX:4633430-4632606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               836
               

               Alignm identity:
               622
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 82
               

               Conread position:
               342-440
               

               Cow position:
               chrX:39511759-39511857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               99
               

               Alignm identity:
               86
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-472
               

               Cow position:
               chrX:1947532-1947402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               109
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-473
               

               Cow position:
               chrX:13922654-13922787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               342-476
               

               Cow position:
               chrX:21495069-21495203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-477
               

               Cow position:
               chrX:38935853-38935988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-479
               

               Cow position:
               chrX:10438511-10438375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               117
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               122, 68
               

               Conread position:
               342-479
               

               Cow position:
               chrX:39556368-39556230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               342-479
               

               Cow position:
               chrX:42222361-42222224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-488
               

               Cow position:
               chrX:30544555-30544410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               342-498
               

               Cow position:
               chrX:17490765-17490928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               342-511
               

               Cow position:
               chrX:21390219-21390383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               342-511
               

               Cow position:
               chrX:30165246-30165081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               124
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               342-511
               

               Cow position:
               chrX:31372889-31373058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               39, 147
               

               Conread position:
               342-513
               

               Cow position:
               chrX:28879179-28879008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-515
               

               Cow position:
               chrX:32057472-32057299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               142
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-515
               

               Cow position:
               chrX:39387004-39386831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               141
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-516
               

               Cow position:
               chrX:21582869-21583043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               135
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-518
               

               Cow position:
               chrX:11744695-11744869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               342-518
               

               Cow position:
               chrX:25946620-25946440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               40, 94
               

               Conread position:
               342-519
               

               Cow position:
               chrX:16744613-16744790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               142
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-524
               

               Cow position:
               chrX:30421721-30421538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               342-524
               

               Cow position:
               chrX:40384473-40384655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               149
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-524
               

               Cow position:
               chrX:40601546-40601728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               150
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-526
               

               Cow position:
               chrX:14990069-14989885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-537
               

               Cow position:
               chrX:7178090-7178273 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               342-537
               

               Cow position:
               chrX:16020957-16020763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               342-537
               

               Cow position:
               chrX:29055346-29055535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               163, 59
               

               Conread position:
               342-539
               

               Cow position:
               chrX:43566880-43567077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               148, 107
               

               Conread position:
               342-550
               

               Cow position:
               chrX:11632075-11632282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               342-550
               

               Cow position:
               chrX:15151249-15151049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               155
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               156, 39
               

               Conread position:
               342-556
               

               Cow position:
               chrX:40542098-40542308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               205, 40
               

               Conread position:
               342-557
               

               Cow position:
               chrX:34663546-34663330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               342-563
               

               Cow position:
               chrX:44396377-44396593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               342-586
               

               Cow position:
               chrX:39702278-39702514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               145, 21
               

               Conread position:
               342-589
               

               Cow position:
               chrX:9161193-9160944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 0
               

               Conread position:
               342-593
               

               Cow position:
               chrX:16782707-16782958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-593
               

               Cow position:
               chrX:45421572-45421319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 92
               

               Conread position:
               342-594
               

               Cow position:
               chrX:26508664-26508924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               192
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               342-596
               

               Cow position:
               chrX:28558314-28558566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               195
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               342-597
               

               Cow position:
               chrX:45975986-45976241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 75
               

               Conread position:
               342-612
               

               Cow position:
               chrX:865823-866093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-620
               

               Cow position:
               chrX:36202819-36203094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 69
               

               Conread position:
               342-625
               

               Cow position:
               chrX:37364149-37364430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               155, 39
               

               Conread position:
               342-637
               

               Cow position:
               chrX:30354813-30355117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               209
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               111, 175
               

               Conread position:
               342-642
               

               Cow position:
               chrX:3145430-3145735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 50
               

               Conread position:
               342-651
               

               Cow position:
               chrX:9953542-9953856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               211, 0
               

               Conread position:
               342-655
               

               Cow position:
               chrX:11073781-11073465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 37
               

               Conread position:
               342-656
               

               Cow position:
               chrX:33815573-33815893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 41
               

               Conread position:
               342-661
               

               Cow position:
               chrX:15993822-15994133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               198, 47
               

               Conread position:
               342-663
               

               Cow position:
               chrX:2185666-2185975 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               220, 82
               

               Conread position:
               342-663
               

               Cow position:
               chrX:4482380-4482686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               342-663
               

               Cow position:
               chrX:6766318-6765990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               342-663
               

               Cow position:
               chrX:8517031-8517356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 152
               

               Conread position:
               342-663
               

               Cow position:
               chrX:17265620-17265298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 96
               

               Conread position:
               342-663
               

               Cow position:
               chrX:17663492-17663164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 12
               

               Conread position:
               342-663
               

               Cow position:
               chrX:23414961-23414634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 0
               

               Conread position:
               342-663
               

               Cow position:
               chrX:24366525-24366202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 79
               

               Conread position:
               342-663
               

               Cow position:
               chrX:30980466-30980156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               112, 205
               

               Conread position:
               342-675
               

               Cow position:
               chrX:11855596-11855929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               342-676
               

               Cow position:
               chrX:2382894-2383215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               159, 88
               

               Conread position:
               342-677
               

               Cow position:
               chrX:19127821-19127465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               249
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               160, 78
               

               Conread position:
               342-680
               

               Cow position:
               chrX:4768143-4768464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 203
               

               Conread position:
               342-680
               

               Cow position:
               chrX:6835834-6835494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               238
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               229, 60
               

               Conread position:
               342-680
               

               Cow position:
               chrX:13057985-13058330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 181
               

               Conread position:
               342-680
               

               Cow position:
               chrX:17631406-17631062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 182
               

               Conread position:
               342-680
               

               Cow position:
               chrX:29875574-29875227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               250
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               40, 88
               

               Conread position:
               342-681
               

               Cow position:
               chrX:22409293-22408950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 337
               

               Conread position:
               342-682
               

               Cow position:
               chrX:1499018-1499360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 50
               

               Conread position:
               342-682
               

               Cow position:
               chrX:1977920-1978262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               220, 125
               

               Conread position:
               342-682
               

               Cow position:
               chrX:7512919-7513258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               342-682
               

               Cow position:
               chrX:12724194-12724537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 182
               

               Conread position:
               342-682
               

               Cow position:
               chrX:20653997-20654347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               240
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               150, 123
               

               Conread position:
               342-682
               

               Cow position:
               chrX:39558938-39558601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               342-687
               

               Cow position:
               chrX:35025238-35025576 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               266, 50
               

               Conread position:
               342-692
               

               Cow position:
               chrX:13404925-13404565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 136
               

               Conread position:
               342-693
               

               Cow position:
               chrX:40224818-40224462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               342-694
               

               Cow position:
               chrX:21415508-21415870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 97
               

               Conread position:
               342-728
               

               Cow position:
               chrX:6406773-6407163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               158, 140
               

               Conread position:
               342-756
               

               Cow position:
               chrX:525106-525528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               210, 51
               

               Conread position:
               342-761
               

               Cow position:
               chrX:38140613-38140179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 295
               

               Conread position:
               342-767
               

               Cow position:
               chrX:3807830-3808271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 72
               

               Conread position:
               342-767
               

               Cow position:
               chrX:4326064-4325634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               300
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               29, 41
               

               Conread position:
               342-773
               

               Cow position:
               chrX:323342-323769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               331, 349
               

               Conread position:
               342-773
               

               Cow position:
               chrX:41433982-41433555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 136
               

               Conread position:
               342-775
               

               Cow position:
               chrX:22330142-22329698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               155, 38
               

               Conread position:
               342-775
               

               Cow position:
               chrX:33614824-33615276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               342-777
               

               Cow position:
               chrX:27997078-27997521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 94
               

               Conread position:
               342-779
               

               Cow position:
               chrX:25329447-25329888 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 191
               

               Conread position:
               342-779
               

               Cow position:
               chrX:27323432-27322993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 41
               

               Conread position:
               342-780
               

               Cow position:
               chrX:2465853-2465402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               463
               

               Alignm identity:
               312
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               28, 71
               

               Conread position:
               342-780
               

               Cow position:
               chrX:16703098-16703548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 152
               

               Conread position:
               342-782
               

               Cow position:
               chrX:8782171-8782624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 210
               

               Conread position:
               342-782
               

               Cow position:
               chrX:15114098-15114551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 214
               

               Conread position:
               342-782
               

               Cow position:
               chrX:24735371-24735818 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 152
               

               Conread position:
               342-782
               

               Cow position:
               chrX:28513500-28513951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 158
               

               Conread position:
               342-782
               

               Cow position:
               chrX:29760114-29760579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               467
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 222
               

               Conread position:
               342-786
               

               Cow position:
               chrX:29780154-29780623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               475
               

               Alignm identity:
               345
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 21
               

               Conread position:
               342-787
               

               Cow position:
               chrX:14162619-14163077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 46
               

               Conread position:
               342-787
               

               Cow position:
               chrX:18898222-18897770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               349
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 29
               

               Conread position:
               342-787
               

               Cow position:
               chrX:32871359-32870901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 397
               

               Conread position:
               342-788
               

               Cow position:
               chrX:2479200-2478741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 0
               

               Conread position:
               342-790
               

               Cow position:
               chrX:3569869-3570338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               470
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               342-793
               

               Cow position:
               chrX:19437658-19437190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               321
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               54, 73
               

               Conread position:
               342-797
               

               Cow position:
               chrX:15718264-15717783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               484
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 305
               

               Conread position:
               342-803
               

               Cow position:
               chrX:47000225-46999759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               479
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 79
               

               Conread position:
               342-809
               

               Cow position:
               chrX:45658649-45658160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               354
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 47
               

               Conread position:
               342-824
               

               Cow position:
               chrX:40279236-40279749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               357
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 79
               

               Conread position:
               342-826
               

               Cow position:
               chrX:35409101-35409591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 12
               

               Conread position:
               342-830
               

               Cow position:
               chrX:26755202-26754707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 224
               

               Conread position:
               342-831
               

               Cow position:
               chrX:11950065-11949557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               381
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 6
               

               Conread position:
               342-831
               

               Cow position:
               chrX:27590607-27590100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 319
               

               Conread position:
               342-840
               

               Cow position:
               chrX:21226901-21227420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               522
               

               Alignm identity:
               386
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 260
               

               Conread position:
               342-881
               

               Cow position:
               chrX:1810733-1810172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               565
               

               Alignm identity:
               432
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               156, 220
               

               Conread position:
               342-881
               

               Cow position:
               chrX:35388481-35387911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 29
               

               Conread position:
               342-899
               

               Cow position:
               chrX:33827622-33827005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               619
               

               Alignm identity:
               426
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 259
               

               Conread position:
               342-909
               

               Cow position:
               chrX:15329079-15329665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 480
               

               Conread position:
               342-929
               

               Cow position:
               chrX:45413222-45412624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               609
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 42
               

               Conread position:
               342-930
               

               Cow position:
               chrX:36250437-36249823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               618
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 151
               

               Conread position:
               342-932
               

               Cow position:
               chrX:17497523-17498125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               607
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 443
               

               Conread position:
               342-940
               

               Cow position:
               chrX:15140121-15139498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               630
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 146
               

               Conread position:
               342-947
               

               Cow position:
               chrX:43408427-43409065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               646
               

               Alignm identity:
               430
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 19
               

               Conread position:
               342-960
               

               Cow position:
               chrX:35609415-35610060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               648
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 36
               

               Conread position:
               342-983
               

               Cow position:
               chrX:28646555-28645902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               661
               

               Alignm identity:
               448
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 38
               

               Conread position:
               342-985
               

               Cow position:
               chrX:21785196-21785868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               678
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 152
               

               Conread position:
               342-1015
               

               Cow position:
               chrX:11819791-11820476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               696
               

               Alignm identity:
               478
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 136
               

               Conread position:
               342-1015
               

               Cow position:
               chrX:22538527-22537820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               710
               

               Alignm identity:
               493
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 635
               

               Conread position:
               342-1021
               

               Cow position:
               chrX:7571330-7572037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               711
               

               Alignm identity:
               517
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 483
               

               Conread position:
               342-1029
               

               Cow position:
               chrX:41122497-41123197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               709
               

               Alignm identity:
               524
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 222
               

               Conread position:
               342-1068
               

               Cow position:
               chrX:28866557-28865828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               742
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 134
               

               Conread position:
               342-1087
               

               Cow position:
               chrX:1055964-1055182 (view UCSC Genome Browser custom track)
               

               Alignm length:
               787
               

               Alignm identity:
               571
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               292, 47
               

               Conread position:
               342-1100
               

               Cow position:
               chrX:12309959-12309173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               792
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 199
               

               Conread position:
               342-1112
               

               Cow position:
               chrX:47211414-47210612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               817
               

               Alignm identity:
               552
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 150
               

               Conread position:
               342-1116
               

               Cow position:
               chrX:12290165-12290946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               794
               

               Alignm identity:
               592
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               327, 38
               

               Conread position:
               342-1125
               

               Cow position:
               chrX:37489153-37489967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               834
               

               Alignm identity:
               611
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 180
               

               Conread position:
               342-1127
               

               Cow position:
               chrX:38072340-38071535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               816
               

               Alignm identity:
               539
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               353, 316
               

               Conread position:
               342-1127
               

               Cow position:
               chrX:44054230-44055042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               821
               

               Alignm identity:
               595
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 340
               

               Conread position:
               342-1128
               

               Cow position:
               chrX:160855-161639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               799
               

               Alignm identity:
               588
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               321, 422
               

               Conread position:
               342-1129
               

               Cow position:
               chrX:21592714-21593532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               831
               

               Alignm identity:
               620
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 12
               

               Conread position:
               342-1137
               

               Cow position:
               chrX:27446122-27446930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               828
               

               Alignm identity:
               607
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 158
               

               Conread position:
               342-1151
               

               Cow position:
               chrX:16078093-16078933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               848
               

               Alignm identity:
               549
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 12
               

               Conread position:
               342-1152
               

               Cow position:
               chrX:151332-152173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               855
               

               Alignm identity:
               608
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 36
               

               Conread position:
               343-499
               

               Cow position:
               chrX:30142181-30142019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               343-680
               

               Cow position:
               chrX:7424854-7425196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 133
               

               Conread position:
               344-693
               

               Cow position:
               chrX:8590962-8591321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               13, 9
               

               Conread position:
               344-702
               

               Cow position:
               chrX:17200216-17200592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               161, 367
               

               Conread position:
               344-766
               

               Cow position:
               chrX:7809580-7809140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               293
               

               Alignm E-value:
               5.99756e-43
               

               Alignm gaps (pig, cow):
               29, 42
               

               Conread position:
               345-470
               

               Cow position:
               chrX:5248815-5248936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               101
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               345-477
               

               Cow position:
               chrX:15008889-15008757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-479
               

               Cow position:
               chrX:1729432-1729298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-479
               

               Cow position:
               chrX:5018174-5018040 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               107
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-488
               

               Cow position:
               chrX:4943780-4943636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               121
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               345-505
               

               Cow position:
               chrX:27616233-27616394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               136
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               345-508
               

               Cow position:
               chrX:3652442-3652605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               121
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               110, 137
               

               Conread position:
               345-534
               

               Cow position:
               chrX:20998846-20998656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               8e-35
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               345-537
               

               Cow position:
               chrX:5292500-5292306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               345-541
               

               Cow position:
               chrX:16290591-16290387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               345-543
               

               Cow position:
               chrX:10301552-10301747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               154
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               345-543
               

               Cow position:
               chrX:21625549-21625352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               53, 59
               

               Conread position:
               345-548
               

               Cow position:
               chrX:21255206-21255409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               162
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-556
               

               Cow position:
               chrX:1958559-1958345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               345-575
               

               Cow position:
               chrX:5639507-5639277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-596
               

               Cow position:
               chrX:45464876-45465125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               345-663
               

               Cow position:
               chrX:17122607-17122285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               230
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               86, 10
               

               Conread position:
               345-663
               

               Cow position:
               chrX:25404926-25404607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 28
               

               Conread position:
               345-663
               

               Cow position:
               chrX:33493162-33493480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-663
               

               Cow position:
               chrX:37955331-37955650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               186, 48
               

               Conread position:
               345-668
               

               Cow position:
               chrX:39352214-39351892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 70
               

               Conread position:
               345-672
               

               Cow position:
               chrX:44961150-44961470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               14, 9
               

               Conread position:
               345-675
               

               Cow position:
               chrX:44568418-44568755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 298
               

               Conread position:
               345-675
               

               Cow position:
               chrX:44901574-44901911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               208, 0
               

               Conread position:
               345-680
               

               Cow position:
               chrX:25436501-25436162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               239
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               205, 75
               

               Conread position:
               345-680
               

               Cow position:
               chrX:33538357-33538694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               153, 75
               

               Conread position:
               345-682
               

               Cow position:
               chrX:19929865-19930198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 38
               

               Conread position:
               345-682
               

               Cow position:
               chrX:37066702-37067044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 97
               

               Conread position:
               345-689
               

               Cow position:
               chrX:38852589-38852933 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               345-694
               

               Cow position:
               chrX:10256712-10256362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 210
               

               Conread position:
               345-734
               

               Cow position:
               chrX:41594852-41594443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 63
               

               Conread position:
               345-761
               

               Cow position:
               chrX:4665189-4664760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               282
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               42, 63
               

               Conread position:
               345-777
               

               Cow position:
               chrX:21833299-21833760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               462
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               345-777
               

               Cow position:
               chrX:25459209-25458762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               345-779
               

               Cow position:
               chrX:13971809-13971350 (view UCSC Genome Browser custom track)
               

               Alignm length:
               461
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 226
               

               Conread position:
               345-780
               

               Cow position:
               chrX:20878332-20877885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               343
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 207
               

               Conread position:
               345-782
               

               Cow position:
               chrX:3372423-3371978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               319, 262
               

               Conread position:
               345-782
               

               Cow position:
               chrX:10915468-10915918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 0
               

               Conread position:
               345-782
               

               Cow position:
               chrX:12347307-12347758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               185, 208
               

               Conread position:
               345-782
               

               Cow position:
               chrX:12360318-12360769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 207
               

               Conread position:
               345-782
               

               Cow position:
               chrX:20021007-20021443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 211
               

               Conread position:
               345-782
               

               Cow position:
               chrX:43217821-43218272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 123
               

               Conread position:
               345-786
               

               Cow position:
               chrX:13405867-13405431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 208
               

               Conread position:
               345-805
               

               Cow position:
               chrX:17743499-17743962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               474
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 207
               

               Conread position:
               345-818
               

               Cow position:
               chrX:44802877-44803344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               476
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 178
               

               Conread position:
               345-819
               

               Cow position:
               chrX:20652838-20653322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               502
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               236, 81
               

               Conread position:
               345-825
               

               Cow position:
               chrX:45042985-45043494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               510
               

               Alignm identity:
               373
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               345-879
               

               Cow position:
               chrX:3405923-3405372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               555
               

               Alignm identity:
               391
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 37
               

               Conread position:
               345-895
               

               Cow position:
               chrX:42086293-42086861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 167
               

               Conread position:
               345-901
               

               Cow position:
               chrX:729434-728898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               575
               

               Alignm identity:
               389
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               345-908
               

               Cow position:
               chrX:39546550-39545958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               593
               

               Alignm identity:
               420
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               345-914
               

               Cow position:
               chrX:20582462-20583044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               590
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 34
               

               Conread position:
               345-933
               

               Cow position:
               chrX:47380037-47379426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               625
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               345-991
               

               Cow position:
               chrX:44874102-44873461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               664
               

               Alignm identity:
               467
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               347, 33
               

               Conread position:
               345-1002
               

               Cow position:
               chrX:27498198-27498883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               690
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 40
               

               Conread position:
               345-1043
               

               Cow position:
               chrX:29289007-29289730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               730
               

               Alignm identity:
               537
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 149
               

               Conread position:
               345-1050
               

               Cow position:
               chrX:878934-878221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               725
               

               Alignm identity:
               526
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 40
               

               Conread position:
               345-1104
               

               Cow position:
               chrX:41192119-41192905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               801
               

               Alignm identity:
               565
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 731
               

               Conread position:
               345-1112
               

               Cow position:
               chrX:37071837-37072610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               798
               

               Alignm identity:
               539
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               179, 43
               

               Conread position:
               345-1113
               

               Cow position:
               chrX:35268326-35269081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               785
               

               Alignm identity:
               586
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 37
               

               Conread position:
               345-1113
               

               Cow position:
               chrX:45967609-45968362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               791
               

               Alignm identity:
               540
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 44
               

               Conread position:
               345-1116
               

               Cow position:
               chrX:14884532-14883729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               811
               

               Alignm identity:
               567
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 259
               

               Conread position:
               345-1116
               

               Cow position:
               chrX:34442013-34441225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               799
               

               Alignm identity:
               613
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               349, 87
               

               Conread position:
               345-1125
               

               Cow position:
               chrX:4996045-4996825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               809
               

               Alignm identity:
               571
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               202, 160
               

               Conread position:
               345-1138
               

               Cow position:
               chrX:3654038-3654855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               828
               

               Alignm identity:
               548
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 109
               

               Conread position:
               346-498
               

               Cow position:
               chrX:10146236-10146085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               117
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               148, 0
               

               Conread position:
               346-523
               

               Cow position:
               chrX:41082678-41082854 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               146
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               346-668
               

               Cow position:
               chrX:13359825-13360146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               67, 25
               

               Conread position:
               346-761
               

               Cow position:
               chrX:20970346-20970780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               289
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               5, 420
               

               Conread position:
               346-824
               

               Cow position:
               chrX:18293370-18293858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               499
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 122
               

               Conread position:
               346-1054
               

               Cow position:
               chrX:40268907-40269657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               753
               

               Alignm identity:
               554
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 490
               

               Conread position:
               346-1125
               

               Cow position:
               chrX:27705024-27705823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               806
               

               Alignm identity:
               614
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               175, 189
               

               Conread position:
               346-1127
               

               Cow position:
               chrX:34222182-34222947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               798
               

               Alignm identity:
               558
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 183
               

               Conread position:
               347-474
               

               Cow position:
               chrX:7444367-7444494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               108
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-478
               

               Cow position:
               chrX:619387-619256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-479
               

               Cow position:
               chrX:22578957-22578825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-479
               

               Cow position:
               chrX:36840135-36840267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               133
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-515
               

               Cow position:
               chrX:22819697-22819865 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               140
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-515
               

               Cow position:
               chrX:37069154-37069327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               347-538
               

               Cow position:
               chrX:31496168-31496359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               157
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               347-573
               

               Cow position:
               chrX:3081699-3081473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               347-642
               

               Cow position:
               chrX:9642000-9641705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               347-663
               

               Cow position:
               chrX:44052334-44052655 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               221
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               166, 199
               

               Conread position:
               347-671
               

               Cow position:
               chrX:39939322-39938994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               206, 295
               

               Conread position:
               347-680
               

               Cow position:
               chrX:13785951-13785613 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 330
               

               Conread position:
               347-680
               

               Cow position:
               chrX:29602608-29602281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               312, 147
               

               Conread position:
               347-688
               

               Cow position:
               chrX:39757465-39757809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 0
               

               Conread position:
               347-690
               

               Cow position:
               chrX:4750940-4750601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               347-692
               

               Cow position:
               chrX:16040249-16039900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 221
               

               Conread position:
               347-693
               

               Cow position:
               chrX:29841737-29841388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-693
               

               Cow position:
               chrX:39292311-39291962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 0
               

               Conread position:
               347-725
               

               Cow position:
               chrX:8434772-8434395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               143, 208
               

               Conread position:
               347-725
               

               Cow position:
               chrX:16046579-16046961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 0
               

               Conread position:
               347-777
               

               Cow position:
               chrX:15621100-15620657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 206
               

               Conread position:
               347-777
               

               Cow position:
               chrX:30163806-30163365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 85
               

               Conread position:
               347-779
               

               Cow position:
               chrX:18656373-18655928 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 206
               

               Conread position:
               347-779
               

               Cow position:
               chrX:20742419-20742863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 123
               

               Conread position:
               347-779
               

               Cow position:
               chrX:26974342-26974787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 204
               

               Conread position:
               347-780
               

               Cow position:
               chrX:29849200-29848753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:3361253-3361698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               342
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 198
               

               Conread position:
               347-782
               

               Cow position:
               chrX:5123927-5123481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 207
               

               Conread position:
               347-782
               

               Cow position:
               chrX:5306033-5306479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 147
               

               Conread position:
               347-782
               

               Cow position:
               chrX:8529972-8530420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:10932105-10932552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 147
               

               Conread position:
               347-782
               

               Cow position:
               chrX:14598278-14598725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 198
               

               Conread position:
               347-782
               

               Cow position:
               chrX:15260187-15259739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               313, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:16465732-16466181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:25289247-25288799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 206
               

               Conread position:
               347-782
               

               Cow position:
               chrX:26760136-26759689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 230
               

               Conread position:
               347-782
               

               Cow position:
               chrX:27305361-27305806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 81
               

               Conread position:
               347-782
               

               Cow position:
               chrX:27422849-27422402 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:29903174-29903623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:30196729-30197177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               347-782
               

               Cow position:
               chrX:31978409-31977966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 141
               

               Conread position:
               347-782
               

               Cow position:
               chrX:38230835-38230387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:38330814-38331260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               347-782
               

               Cow position:
               chrX:40591118-40591566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:45236898-45237346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 0
               

               Conread position:
               347-782
               

               Cow position:
               chrX:46297092-46297540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               339
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 205
               

               Conread position:
               347-793
               

               Cow position:
               chrX:6906375-6905929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               465
               

               Alignm identity:
               308
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               204, 81
               

               Conread position:
               347-810
               

               Cow position:
               chrX:4630267-4629770 (view UCSC Genome Browser custom track)
               

               Alignm length:
               500
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               218, 84
               

               Conread position:
               347-874
               

               Cow position:
               chrX:2648929-2648369 (view UCSC Genome Browser custom track)
               

               Alignm length:
               563
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 105
               

               Conread position:
               347-1015
               

               Cow position:
               chrX:3649376-3648689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               689
               

               Alignm identity:
               480
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 501
               

               Conread position:
               347-1111
               

               Cow position:
               chrX:37781645-37780889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               781
               

               Alignm identity:
               520
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 55
               

               Conread position:
               347-1116
               

               Cow position:
               chrX:7695212-7695991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               805
               

               Alignm identity:
               591
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               318, 157
               

               Conread position:
               347-1124
               

               Cow position:
               chrX:11655515-11656314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               824
               

               Alignm identity:
               592
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               200, 55
               

               Conread position:
               348-470
               

               Cow position:
               chrX:28133547-28133665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               348-540
               

               Cow position:
               chrX:24231838-24231644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               111, 98
               

               Conread position:
               348-782
               

               Cow position:
               chrX:11566347-11566794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               316, 0
               

               Conread position:
               349-593
               

               Cow position:
               chrX:6235206-6234979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               189
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               349-594
               

               Cow position:
               chrX:6642125-6642384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               349-782
               

               Cow position:
               chrX:2579853-2580279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 132
               

               Conread position:
               349-782
               

               Cow position:
               chrX:10351295-10351741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               333
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               315, 0
               

               Conread position:
               349-787
               

               Cow position:
               chrX:23572365-23571914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 33
               

               Conread position:
               350-455
               

               Cow position:
               chrX:35283712-35283816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               90
               

               Alignm E-value:
               8e-25
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               350-503
               

               Cow position:
               chrX:617013-616860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               129
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-517
               

               Cow position:
               chrX:34502380-34502551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               7, 97
               

               Conread position:
               350-517
               

               Cow position:
               chrX:34719948-34720115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               140
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-541
               

               Cow position:
               chrX:13030776-13030585 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               156
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               350-557
               

               Cow position:
               chrX:8103868-8103666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               83, 73
               

               Conread position:
               350-563
               

               Cow position:
               chrX:10465220-10465433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 202
               

               Conread position:
               350-603
               

               Cow position:
               chrX:2293165-2292912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               202
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 202
               

               Conread position:
               350-605
               

               Cow position:
               chrX:12996420-12996171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               350-613
               

               Cow position:
               chrX:28706537-28706800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 202
               

               Conread position:
               350-655
               

               Cow position:
               chrX:37832037-37831727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 97
               

               Conread position:
               350-656
               

               Cow position:
               chrX:40475394-40475100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 0
               

               Conread position:
               350-663
               

               Cow position:
               chrX:16324809-16324499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               197, 30
               

               Conread position:
               350-680
               

               Cow position:
               chrX:28624325-28623994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 158
               

               Conread position:
               350-681
               

               Cow position:
               chrX:30688500-30688834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 0
               

               Conread position:
               350-685
               

               Cow position:
               chrX:30825083-30825421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 202
               

               Conread position:
               350-693
               

               Cow position:
               chrX:2715057-2715403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 202
               

               Conread position:
               350-693
               

               Cow position:
               chrX:24975379-24975718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 191
               

               Conread position:
               350-693
               

               Cow position:
               chrX:28313860-28314206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 202
               

               Conread position:
               350-693
               

               Cow position:
               chrX:41762375-41762050 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               31, 39
               

               Conread position:
               350-761
               

               Cow position:
               chrX:26878091-26878522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 150
               

               Conread position:
               350-777
               

               Cow position:
               chrX:28588406-28588843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               195, 150
               

               Conread position:
               350-777
               

               Cow position:
               chrX:36513896-36514327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 269
               

               Conread position:
               350-777
               

               Cow position:
               chrX:47144511-47144966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 192
               
UCSC Genome Browser
               Conread position:
               350-779
               

               Cow position:
               chrX:30816834-30816392 (view  custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               314, 0
               
UCSC Genome Browser
               
               
               
Conread position: 350-780

               
               
               
Cow position: chrX:1976162-1975719 (view  custom track)

               
               
               
Alignm length: 445

               
               
               
Alignm identity: 337

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 195, 203
UCSC Genome Browser
               
               
               
Conread position: 350-780

               
               
               
Cow position: chrX:10923136-10922693 (view  custom track)

               
               
               
Alignm length: 445

               
               
               
Alignm identity: 340

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 195, 203

               
               
               Conread position:350-780
               
               
               Cow position:chrX:19775045-19774602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:350-780
               
               
               Cow position:chrX:20098757-20099200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 202

               
               
               Conread position:350-780
               
               
               Cow position:chrX:30965536-30965979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 202

               
               
               Conread position:350-780
               
               
               Cow position:chrX:37061356-37060913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:350-782
               
               
               Cow position:chrX:2151497-2151053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 216

               
               
               Conread position:350-782
               
               
               Cow position:chrX:3096320-3095890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):342, 282

               
               
               Conread position:350-782
               
               
               Cow position:chrX:4622519-4622074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:350-782
               
               
               Cow position:chrX:5892663-5893108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 202

               
               
               Conread position:350-782
               
               
               Cow position:chrX:7486299-7486744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 202

               
               
               Conread position:350-782
               
               
               Cow position:chrX:9018868-9018423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:350-782
               
               
               Cow position:chrX:16734960-16735404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 43

               
               
               Conread position:350-782
               
               
               Cow position:chrX:22609157-22608712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:350-782
               
               
               Cow position:chrX:22888093-22888539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 0

               
               
               Conread position:350-782
               
               
               Cow position:chrX:26275573-26276019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:350-782
               
               
               Cow position:chrX:29225913-29226356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 131

               
               
               Conread position:350-782
               
               
               Cow position:chrX:29777477-29777921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 0

               
               
               Conread position:350-782
               
               
               Cow position:chrX:30159560-30159131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 184

               
               
               Conread position:350-782
               
               
               Cow position:chrX:30172272-30171830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 30

               
               
               Conread position:350-782
               
               
               Cow position:chrX:30752210-30752654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 29

               
               
               Conread position:350-782
               
               
               Cow position:chrX:38014529-38014974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 359

               
               
               Conread position:350-783
               
               
               Cow position:chrX:22556936-22557382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 202

               
               
               Conread position:350-809
               
               
               Cow position:chrX:18451644-18451174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 203

               
               
               Conread position:350-838
               
               
               Cow position:chrX:20032396-20031887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:511
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):319, 367

               
               
               Conread position:350-850
               
               
               Cow position:chrX:26617486-26616974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):314, 442

               
               
               Conread position:350-902
               
               
               Cow position:chrX:11674491-11675075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:589
               
               
               Alignm identity:420
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 96

               
               
               Conread position:350-932
               
               
               Cow position:chrX:34990496-34991076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:603
               
               
               Alignm identity:407
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 73

               
               
               Conread position:350-940
               
               
               Cow position:chrX:35680779-35681391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:626
               
               
               Alignm identity:472
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 145

               
               
               Conread position:350-1128
               
               
               Cow position:chrX:24317502-24318304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:820
               
               
               Alignm identity:575
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 70

               
               
               Conread position:351-511
               
               
               Cow position:chrX:44737695-44737534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:351-539
               
               
               Cow position:chrX:45400604-45400416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 131

               
               
               Conread position:351-573
               
               
               Cow position:chrX:22771698-22771474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:351-662
               
               
               Cow position:chrX:33589573-33589886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 69

               
               
               Conread position:351-663
               
               
               Cow position:chrX:40496162-40495850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:218
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):219, 93

               
               
               Conread position:351-680
               
               
               Cow position:chrX:25163216-25163559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):85, 38

               
               
               Conread position:351-1134
               
               
               Cow position:chrX:6543694-6544491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:815
               
               
               Alignm identity:586
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):312, 23

               
               
               Conread position:352-607
               
               
               Cow position:chrX:12823437-12823698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):204, 0

               
               
               Conread position:352-657
               
               
               Cow position:chrX:6695911-6695603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 30

               
               
               Conread position:353-594
               
               
               Cow position:chrX:38007540-38007299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:354-495
               
               
               Cow position:chrX:1616797-1616658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:354-510
               
               
               Cow position:chrX:14049755-14049599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:354-523
               
               
               Cow position:chrX:33685004-33684836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:142
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:354-530
               
               
               Cow position:chrX:34253668-34253843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:147
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:354-537
               
               
               Cow position:chrX:37080080-37079897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:152
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:354-559
               
               
               Cow position:chrX:36479196-36478990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:354-578
               
               
               Cow position:chrX:39730700-39730477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:354-589
               
               
               Cow position:chrX:5392136-5391901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-610
               
               
               Cow position:chrX:29907763-29907507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 207

               
               
               Conread position:354-634
               
               
               Cow position:chrX:16808396-16808117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:354-645
               
               
               Cow position:chrX:6581373-6581664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-662
               
               
               Cow position:chrX:16086684-16086377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 90

               
               
               Conread position:354-662
               
               
               Cow position:chrX:17291369-17291677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:354-663
               
               
               Cow position:chrX:21662538-21662843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 19

               
               
               Conread position:354-671
               
               
               Cow position:chrX:18488275-18487958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-690
               
               
               Cow position:chrX:39185612-39185951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-692
               
               
               Cow position:chrX:2048551-2048889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 52

               
               
               Conread position:354-692
               
               
               Cow position:chrX:19399217-19399558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-692
               
               
               Cow position:chrX:28503775-28504106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-693
               
               
               Cow position:chrX:11716023-11715681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-693
               
               
               Cow position:chrX:22521782-22521440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):315, 0

               
               
               Conread position:354-693
               
               
               Cow position:chrX:24447251-24447582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 140

               
               
               Conread position:354-693
               
               
               Cow position:chrX:27318670-27318997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):313, 98

               
               
               Conread position:354-693
               
               
               Cow position:chrX:28752901-28752559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-766
               
               
               Cow position:chrX:30053029-30052607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 9

               
               
               Conread position:354-776
               
               
               Cow position:chrX:3417698-3417265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 59

               
               
               Conread position:354-776
               
               
               Cow position:chrX:26506502-26506070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 202

               
               
               Conread position:354-777
               
               
               Cow position:chrX:2932281-2931845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-777
               
               
               Cow position:chrX:6870124-6869689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):308, 0

               
               
               Conread position:354-777
               
               
               Cow position:chrX:11145898-11145465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 140

               
               
               Conread position:354-777
               
               
               Cow position:chrX:14781907-14781472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:354-777
               
               
               Cow position:chrX:22612824-22613259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 356

               
               
               Conread position:354-779
               
               
               Cow position:chrX:24467686-24467249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-779
               
               
               Cow position:chrX:29169902-29169457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:354-780
               
               
               Cow position:chrX:6558289-6558731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:362014-361573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:1576824-1576383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 212

               
               
               Conread position:354-782
               
               
               Cow position:chrX:2559521-2559083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:4343190-4343629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 26

               
               
               Conread position:354-782
               
               
               Cow position:chrX:5280414-5279977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 412

               
               
               Conread position:354-782
               
               
               Cow position:chrX:5289247-5288807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):230, 26

               
               
               Conread position:354-782
               
               
               Cow position:chrX:5320280-5319836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 156

               
               
               Conread position:354-782
               
               
               Cow position:chrX:5408494-5408935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:5646665-5646224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:5866585-5867025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 409

               
               
               Conread position:354-782
               
               
               Cow position:chrX:6454135-6454575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 167

               
               
               Conread position:354-782
               
               
               Cow position:chrX:7119205-7118764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:8483530-8483958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 25

               
               
               Conread position:354-782
               
               
               Cow position:chrX:9085894-9085453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:9128495-9128936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:10427979-10428419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:10444976-10444534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:10528335-10527895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:11358626-11358185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:12001708-12001267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:12145541-12145974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 67

               
               
               Conread position:354-782
               
               
               Cow position:chrX:12458136-12458578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:14458728-14458289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:14462748-14463193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:15091330-15090887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 265

               
               
               Conread position:354-782
               
               
               Cow position:chrX:15346530-15346089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:16285650-16286089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 213

               
               
               Conread position:354-782
               
               
               Cow position:chrX:16478354-16478782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:17055008-17055449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 355

               
               
               Conread position:354-782
               
               
               Cow position:chrX:17782938-17783379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:17994898-17995339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:18024479-18024919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 229

               
               
               Conread position:354-782
               
               
               Cow position:chrX:18222852-18223292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:18462536-18462095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:19022870-19022429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:19109602-19109161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:19473721-19473280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 178

               
               
               Conread position:354-782
               
               
               Cow position:chrX:21686058-21686494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:21768243-21768684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:22568578-22568139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:23109203-23109639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 121

               
               
               Conread position:354-782
               
               
               Cow position:chrX:24320833-24320396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):340, 409

               
               
               Conread position:354-782
               
               
               Cow position:chrX:24413469-24413910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 344

               
               
               Conread position:354-782
               
               
               Cow position:chrX:24509306-24509747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:27594741-27594302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:27759146-27759587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:29912778-29913219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:30199553-30199112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:30822023-30822464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:30836812-30837253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:31814450-31814009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 355

               
               
               Conread position:354-782
               
               
               Cow position:chrX:32039403-32038963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 168

               
               
               Conread position:354-782
               
               
               Cow position:chrX:32331070-32331507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:33763783-33764224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:34519165-34519606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:35533290-35533731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:36195531-36195972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-782
               
               
               Cow position:chrX:36535296-36534855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:354-782
               
               
               Cow position:chrX:36729823-36730264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-782
               
               
               Cow position:chrX:37816029-37816468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:338
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 66

               
               
               Conread position:354-782
               
               
               Cow position:chrX:37852578-37853011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-784
               
               
               Cow position:chrX:37764758-37764314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-784
               
               
               Cow position:chrX:37772995-37772550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):310, 0

               
               
               Conread position:354-787
               
               
               Cow position:chrX:44168871-44168424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 198

               
               
               Conread position:354-789
               
               
               Cow position:chrX:13071165-13070715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 203

               
               
               Conread position:354-789
               
               
               Cow position:chrX:13091725-13091275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 203

               
               
               Conread position:354-789
               
               
               Cow position:chrX:41488726-41488278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 199

               
               
               Conread position:355-657
               
               
               Cow position:chrX:20953972-20954268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 24

               
               
               Conread position:356-683
               
               
               Cow position:chrX:4409000-4409339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):194, 251

               
               
               Conread position:357-537
               
               
               Cow position:chrX:12179117-12179297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):133, 17

               
               
               Conread position:357-556
               
               
               Cow position:chrX:13821311-13821509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):24, 33

               
               
               Conread position:357-680
               
               
               Cow position:chrX:27772641-27772344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:357-761
               
               
               Cow position:chrX:31777993-31777577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:265
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):178, 124

               
               
               Conread position:357-1134
               
               
               Cow position:chrX:41527070-41526288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:804
               
               
               Alignm identity:541
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:358-488
               
               
               Cow position:chrX:22564244-22564114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-511
               
               
               Cow position:chrX:32010512-32010359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-515
               
               
               Cow position:chrX:2500188-2500032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:358-515
               
               
               Cow position:chrX:29064856-29065013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:131
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-516
               
               
               Cow position:chrX:5331994-5331836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-518
               
               
               Cow position:chrX:31472822-31472982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-569
               
               
               Cow position:chrX:16514804-16514593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:358-573
               
               
               Cow position:chrX:29083521-29083737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:358-629
               
               
               Cow position:chrX:21595980-21596251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 102

               
               
               Conread position:358-633
               
               
               Cow position:chrX:37118340-37118623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 123

               
               
               Conread position:358-641
               
               
               Cow position:chrX:7288274-7288567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):57, 151

               
               
               Conread position:358-662
               
               
               Cow position:chrX:23987986-23988284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:358-662
               
               
               Cow position:chrX:38961403-38961099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:358-663
               
               
               Cow position:chrX:6044046-6043737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 174

               
               
               Conread position:358-663
               
               
               Cow position:chrX:35440993-35441299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:224
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):192, 37

               
               
               Conread position:358-678
               
               
               Cow position:chrX:14030461-14030784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 198

               
               
               Conread position:358-685
               
               
               Cow position:chrX:28820179-28820512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 63

               
               
               Conread position:358-692
               
               
               Cow position:chrX:22603995-22603659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 101

               
               
               Conread position:358-693
               
               
               Cow position:chrX:11461428-11461091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 181

               
               
               Conread position:358-693
               
               
               Cow position:chrX:23341551-23341216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 182

               
               
               Conread position:358-720
               
               
               Cow position:chrX:28024706-28025070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 194

               
               
               Conread position:358-723
               
               
               Cow position:chrX:7677414-7677778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 52

               
               
               Conread position:358-725
               
               
               Cow position:chrX:5423623-5423254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:358-725
               
               
               Cow position:chrX:6372624-6372993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 351

               
               
               Conread position:358-763
               
               
               Cow position:chrX:2486187-2485772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 174

               
               
               Conread position:358-765
               
               
               Cow position:chrX:24173722-24173308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):305, 187

               
               
               Conread position:358-777
               
               
               Cow position:chrX:671560-671136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 46

               
               
               Conread position:358-777
               
               
               Cow position:chrX:13928308-13927898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):349, 21

               
               
               Conread position:358-777
               
               
               Cow position:chrX:40517032-40517451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:276
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 31

               
               
               Conread position:358-779
               
               
               Cow position:chrX:15439194-15438776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 136

               
               
               Conread position:358-779
               
               
               Cow position:chrX:28518277-28517848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 22

               
               
               Conread position:358-780
               
               
               Cow position:chrX:23316978-23316545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:358-782
               
               
               Cow position:chrX:2103848-2104281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 420

               
               
               Conread position:358-782
               
               
               Cow position:chrX:2160208-2160645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 0

               
               
               Conread position:358-782
               
               
               Cow position:chrX:2274360-2274797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 194

               
               
               Conread position:358-782
               
               
               Cow position:chrX:3464633-3464198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:358-782
               
               
               Cow position:chrX:4869002-4869423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 62

               
               
               Conread position:358-782
               
               
               Cow position:chrX:5334376-5333941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:358-782
               
               
               Cow position:chrX:7755344-7755781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 194

               
               
               Conread position:358-782
               
               
               Cow position:chrX:8641231-8641667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 0

               
               
               Conread position:358-782
               
               
               Cow position:chrX:9011770-9012207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 0

               
               
               Conread position:358-782
               
               
               Cow position:chrX:9169171-9168734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 351

               
               
               Conread position:358-782
               
               
               Cow position:chrX:14801375-14800938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:358-782
               
               
               Cow position:chrX:15173081-15172653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 40

               
               
               Conread position:358-782
               
               
               Cow position:chrX:16359566-16359135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 208

               
               
               Conread position:358-782
               
               
               Cow position:chrX:21343837-21344274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 194

               
               
               Conread position:358-782
               
               
               Cow position:chrX:26230073-26229634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 221

               
               
               Conread position:358-782
               
               
               Cow position:chrX:28559391-28558957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):306, 193

               
               
               Conread position:358-782
               
               
               Cow position:chrX:39560209-39559773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 195

               
               
               Conread position:358-782
               
               
               Cow position:chrX:39713994-39714429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):304, 173

               
               
               Conread position:358-782
               
               
               Cow position:chrX:42120746-42121183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 194

               
               
               Conread position:358-782
               
               
               Cow position:chrX:45903620-45904058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:358-786
               
               
               Cow position:chrX:24588011-24587569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 0

               
               
               Conread position:358-793
               
               
               Cow position:chrX:2524293-2523840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:455
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 440

               
               
               Conread position:358-800
               
               
               Cow position:chrX:7096901-7097355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 194

               
               
               Conread position:358-824
               
               
               Cow position:chrX:14819157-14819647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 45

               
               
               Conread position:358-826
               
               
               Cow position:chrX:41733752-41733260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:356
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 142

               
               
               Conread position:358-853
               
               
               Cow position:chrX:35937623-35937120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 176

               
               
               Conread position:358-940
               
               
               Cow position:chrX:40452777-40452171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 73

               
               
               Conread position:358-985
               
               
               Cow position:chrX:42733309-42733954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:650
               
               
               Alignm identity:435
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):309, 207

               
               
               Conread position:358-1047
               
               
               Cow position:chrX:24424955-24424245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:726
               
               
               Alignm identity:496
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 34

               
               
               Conread position:358-1068
               
               
               Cow position:chrX:38227650-38226933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:738
               
               
               Alignm identity:537
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 420

               
               
               Conread position:358-1112
               
               
               Cow position:chrX:12249244-12250039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:805
               
               
               Alignm identity:566
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 101

               
               
               Conread position:358-1116
               
               
               Cow position:chrX:13912539-13913303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:793
               
               
               Alignm identity:539
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 49

               
               
               Conread position:358-1125
               
               
               Cow position:chrX:38963556-38964334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:792
               
               
               Alignm identity:598
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):273, 185

               
               
               Conread position:358-1127
               
               
               Cow position:chrX:28633033-28632243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:800
               
               
               Alignm identity:554
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:359-510
               
               
               Cow position:chrX:8795920-8796068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:359-518
               
               
               Cow position:chrX:31570490-31570650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:359-619
               
               
               Cow position:chrX:18468214-18468478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):188, 24

               
               
               Conread position:359-651
               
               
               Cow position:chrX:9635809-9635516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 0

               
               
               Conread position:359-654
               
               
               Cow position:chrX:18988905-18989205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):198, 139

               
               
               Conread position:359-656
               
               
               Cow position:chrX:3211101-3210802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 48

               
               
               Conread position:359-663
               
               
               Cow position:chrX:4329638-4329332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:359-663
               
               
               Cow position:chrX:9537986-9538291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:359-663
               
               
               Cow position:chrX:21191314-21191626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:213
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):33, 138

               
               
               Conread position:359-663
               
               
               Cow position:chrX:21815610-21815917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 89

               
               
               Conread position:359-665
               
               
               Cow position:chrX:5648942-5648645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):118, 61

               
               
               Conread position:359-665
               
               
               Cow position:chrX:10852174-10851868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):66, 157

               
               
               Conread position:359-679
               
               
               Cow position:chrX:13430018-13429706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):148, 135

               
               
               Conread position:359-693
               
               
               Cow position:chrX:31982184-31981845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:359-697
               
               
               Cow position:chrX:5070042-5069708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:235
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):148, 20

               
               
               Conread position:359-714
               
               
               Cow position:chrX:24951102-24950740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:227
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 232

               
               
               Conread position:359-718
               
               
               Cow position:chrX:23831997-23831642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:359-737
               
               
               Cow position:chrX:42540043-42540436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:256
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 26

               
               
               Conread position:359-760
               
               
               Cow position:chrX:34866388-34865997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):196, 39

               
               
               Conread position:359-761
               
               
               Cow position:chrX:17064742-17064333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):59, 63

               
               
               Conread position:359-777
               
               
               Cow position:chrX:30085807-30085394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):78, 33

               
               
               Conread position:359-780
               
               
               Cow position:chrX:2463252-2462835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 61

               
               
               Conread position:359-782
               
               
               Cow position:chrX:16279096-16279529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 22

               
               
               Conread position:359-782
               
               
               Cow position:chrX:30940625-30941061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 193

               
               
               Conread position:359-792
               
               
               Cow position:chrX:12465939-12466382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:446
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 193

               
               
               Conread position:359-812
               
               
               Cow position:chrX:12291804-12292264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:313
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):303, 61

               
               
               Conread position:360-675
               
               
               Cow position:chrX:8541911-8542232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:228
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):110, 236

               
               
               Conread position:360-692
               
               
               Cow position:chrX:18247794-18248119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 20

               
               
               Conread position:360-693
               
               
               Cow position:chrX:23819780-23819444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:360-773
               
               
               Cow position:chrX:33803572-33803144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 34

               
               
               Conread position:360-782
               
               
               Cow position:chrX:27404500-27404066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 193

               
               
               Conread position:361-477
               
               
               Cow position:chrX:28105057-28105174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):20, 94

               
               
               Conread position:361-549
               
               
               Cow position:chrX:24202471-24202660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:361-589
               
               
               Cow position:chrX:9227635-9227407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:361-689
               
               
               Cow position:chrX:27098571-27098244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):189, 32

               
               
               Conread position:361-734
               
               
               Cow position:chrX:9837564-9837939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 139

               
               
               Conread position:361-782
               
               
               Cow position:chrX:31605130-31605564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 191

               
               
               Conread position:361-820
               
               
               Cow position:chrX:3396328-3395839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 227

               
               
               Conread position:361-823
               
               
               Cow position:chrX:28110941-28111433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:355
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 116

               
               
               Conread position:361-831
               
               
               Cow position:chrX:40121557-40121079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):301, 168

               
               
               Conread position:361-1140
               
               
               Cow position:chrX:41790992-41790174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:832
               
               
               Alignm identity:593
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 175

               
               
               Conread position:362-693
               
               
               Cow position:chrX:39383634-39383298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):34, 12

               
               
               Conread position:363-472
               
               
               Cow position:chrX:16527934-16528042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:363-813
               
               
               Cow position:chrX:9299399-9298917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 0

               
               
               Conread position:363-1151
               
               
               Cow position:chrX:7277381-7278166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:808
               
               
               Alignm identity:582
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):283, 131

               
               
               Conread position:364-591
               
               
               Cow position:chrX:27395550-27395317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:364-646
               
               
               Cow position:chrX:8518521-8518806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):195, 229

               
               
               Conread position:365-814
               
               
               Cow position:chrX:43648306-43647824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 56

               
               
               Conread position:365-839
               
               
               Cow position:chrX:32182586-32182087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 139

               
               
               Conread position:366-841
               
               
               Cow position:chrX:24125595-24125122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:500
               
               
               Alignm identity:352
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 100

               
               
               Conread position:367-479
               
               
               Cow position:chrX:25569044-25568933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:367-762
               
               
               Cow position:chrX:24529098-24529489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:263
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):183, 25

               
               
               Conread position:367-782
               
               
               Cow position:chrX:14122299-14121872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 192

               
               
               Conread position:368-540
               
               
               Cow position:chrX:22139791-22139618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:368-663
               
               
               Cow position:chrX:19878488-19878785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 12

               
               
               Conread position:368-663
               
               
               Cow position:chrX:25282037-25281736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 226

               
               
               Conread position:368-681
               
               
               Cow position:chrX:29031829-29032152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 300

               
               
               Conread position:368-692
               
               
               Cow position:chrX:2790689-2791020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 21

               
               
               Conread position:368-693
               
               
               Cow position:chrX:18799831-18799500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):179, 15

               
               
               Conread position:368-792
               
               
               Cow position:chrX:1331389-1331823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):299, 129

               
               
               Conread position:369-511
               
               
               Cow position:chrX:14901614-14901472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):127, 114

               
               
               Conread position:369-515
               
               
               Cow position:chrX:30484580-30484727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:370-672
               
               
               Cow position:chrX:40788606-40788917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 15

               
               
               Conread position:370-680
               
               
               Cow position:chrX:32623016-32623329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 83

               
               
               Conread position:370-718
               
               
               Cow position:chrX:25039035-25039392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:237
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:370-761
               
               
               Cow position:chrX:3121413-3121005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:272
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:370-779
               
               
               Cow position:chrX:44930095-44930510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 136

               
               
               Conread position:371-593
               
               
               Cow position:chrX:23908720-23908493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:371-682
               
               
               Cow position:chrX:16733292-16732977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 11

               
               
               Conread position:371-761
               
               
               Cow position:chrX:388962-389362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):176, 137

               
               
               Conread position:371-761
               
               
               Cow position:chrX:35832865-35833266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:263
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:371-777
               
               
               Cow position:chrX:27240192-27240611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:285
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):187, 49

               
               
               Conread position:371-782
               
               
               Cow position:chrX:24769404-24768984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 0

               
               
               Conread position:371-787
               
               
               Cow position:chrX:32094994-32094564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 50

               
               
               Conread position:371-955
               
               
               Cow position:chrX:34797490-34798074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:585
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:372-558
               
               
               Cow position:chrX:14924494-14924679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:372-692
               
               
               Cow position:chrX:22449372-22449694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):297, 8

               
               
               Conread position:372-713
               
               
               Cow position:chrX:16345380-16345726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:238
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):132, 11

               
               
               Conread position:372-780
               
               
               Cow position:chrX:1550407-1550828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 20

               
               
               Conread position:373-682
               
               
               Cow position:chrX:42757105-42757425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:373-691
               
               
               Cow position:chrX:31460298-31460608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):24, 10

               
               
               Conread position:373-693
               
               
               Cow position:chrX:22522373-22522050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):172, 179

               
               
               Conread position:373-931
               
               
               Cow position:chrX:45992705-45993265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:580
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 48

               
               
               Conread position:374-506
               
               
               Cow position:chrX:31373058-31373190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:374-506
               
               
               Cow position:chrX:40581258-40581391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:374-516
               
               
               Cow position:chrX:20362675-20362533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:374-518
               
               
               Cow position:chrX:6019665-6019810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:374-524
               
               
               Cow position:chrX:46721538-46721386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:374-576
               
               
               Cow position:chrX:40559804-40559602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:374-661
               
               
               Cow position:chrX:41067295-41067585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 19

               
               
               Conread position:374-663
               
               
               Cow position:chrX:3582651-3582945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 120

               
               
               Conread position:374-663
               
               
               Cow position:chrX:23969816-23970106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:374-680
               
               
               Cow position:chrX:2146773-2147084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 111

               
               
               Conread position:374-680
               
               
               Cow position:chrX:5277459-5277151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):176, 118

               
               
               Conread position:374-730
               
               
               Cow position:chrX:10440381-10440013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 19

               
               
               Conread position:374-775
               
               
               Cow position:chrX:47368790-47368378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:374-777
               
               
               Cow position:chrX:502125-501714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 220

               
               
               Conread position:374-777
               
               
               Cow position:chrX:9438976-9439398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):121, 11

               
               
               Conread position:374-777
               
               
               Cow position:chrX:18990315-18989927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):295, 120

               
               
               Conread position:374-784
               
               
               Cow position:chrX:19919131-19918712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:374-785
               
               
               Cow position:chrX:32144703-32144280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 102

               
               
               Conread position:374-790
               
               
               Cow position:chrX:24888676-24888249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):173, 211

               
               
               Conread position:374-803
               
               
               Cow position:chrX:10416066-10415619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 229

               
               
               Conread position:374-819
               
               
               Cow position:chrX:37760311-37760772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 316

               
               
               Conread position:374-824
               
               
               Cow position:chrX:20504220-20504684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:374-884
               
               
               Cow position:chrX:3653234-3653753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:534
               
               
               Alignm identity:372
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 14

               
               
               Conread position:374-969
               
               
               Cow position:chrX:24105087-24105702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:623
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):295, 101

               
               
               Conread position:374-1068
               
               
               Cow position:chrX:45373824-45373107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:730
               
               
               Alignm identity:486
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 213

               
               
               Conread position:374-1112
               
               
               Cow position:chrX:45430563-45429807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:771
               
               
               Alignm identity:523
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 68

               
               
               Conread position:374-1116
               
               
               Cow position:chrX:22115825-22115086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:768
               
               
               Alignm identity:550
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 82

               
               
               Conread position:374-1125
               
               
               Cow position:chrX:46533061-46532252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:810
               
               
               Alignm identity:597
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):289, 0

               
               
               Conread position:374-1133
               
               
               Cow position:chrX:13178005-13177240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:790
               
               
               Alignm identity:555
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:375-479
               
               
               Cow position:chrX:125953-126057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:375-656
               
               
               Cow position:chrX:3813001-3813291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:375-792
               
               
               Cow position:chrX:39698787-39699214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:324
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 182

               
               
               Conread position:375-1047
               
               
               Cow position:chrX:45113094-45113776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:695
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 296

               
               
               Conread position:376-519
               
               
               Cow position:chrX:25848411-25848554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 17

               
               
               Conread position:376-662
               
               
               Cow position:chrX:22901204-22900912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:376-663
               
               
               Cow position:chrX:20675567-20675848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:376-752
               
               
               Cow position:chrX:3223587-3223203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 322

               
               
               Conread position:377-663
               
               
               Cow position:chrX:28993685-28993397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):133, 69

               
               
               Conread position:377-678
               
               
               Cow position:chrX:3596605-3596301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 176

               
               
               Conread position:380-680
               
               
               Cow position:chrX:35847681-35847981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):293, 103

               
               
               Conread position:380-710
               
               
               Cow position:chrX:45200427-45200083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):176, 112

               
               
               Conread position:380-766
               
               
               Cow position:chrX:12853040-12852648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:264
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):107, 21

               
               
               Conread position:383-516
               
               
               Cow position:chrX:17889154-17889021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:383-682
               
               
               Cow position:chrX:48310917-48310610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 239

               
               
               Conread position:383-777
               
               
               Cow position:chrX:37128320-37128721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:259
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):68, 139

               
               
               Conread position:383-782
               
               
               Cow position:chrX:15531684-15531275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 184

               
               
               Conread position:383-851
               
               
               Cow position:chrX:20957483-20957957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:483
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 248

               
               
               Conread position:383-857
               
               
               Cow position:chrX:4123304-4123802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:501
               
               
               Alignm identity:385
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 47

               
               
               Conread position:384-682
               
               
               Cow position:chrX:42531027-42530715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:384-782
               
               
               Cow position:chrX:6196283-6195874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 27

               
               
               Conread position:385-615
               
               
               Cow position:chrX:11448633-11448398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):162, 17

               
               
               Conread position:385-640
               
               
               Cow position:chrX:38642490-38642750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 194

               
               
               Conread position:385-665
               
               
               Cow position:chrX:11115699-11115417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 69

               
               
               Conread position:385-682
               
               
               Cow position:chrX:46698606-46698305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):111, 205

               
               
               Conread position:385-693
               
               
               Cow position:chrX:158363-158053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 63

               
               
               Conread position:385-725
               
               
               Cow position:chrX:42459644-42459992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):279, 13

               
               
               Conread position:385-737
               
               
               Cow position:chrX:24006354-24005994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:246
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):166, 68

               
               
               Conread position:385-777
               
               
               Cow position:chrX:23932761-23932366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:258
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):286, 165

               
               
               Conread position:385-777
               
               
               Cow position:chrX:33003722-33004129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):166, 69

               
               
               Conread position:386-1112
               
               
               Cow position:chrX:15007680-15006935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:755
               
               
               Alignm identity:540
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):278, 549

               
               
               Conread position:386-1124
               
               
               Cow position:chrX:20340418-20339659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:773
               
               
               Alignm identity:572
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 7

               
               
               Conread position:387-710
               
               
               Cow position:chrX:5566351-5566015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):142, 44

               
               
               Conread position:387-717
               
               
               Cow position:chrX:10409615-10409275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:387-748
               
               
               Cow position:chrX:24788239-24787878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:387-806
               
               
               Cow position:chrX:20383065-20382642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 276

               
               
               Conread position:388-782
               
               
               Cow position:chrX:6566547-6566954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 164

               
               
               Conread position:388-782
               
               
               Cow position:chrX:16074061-16074456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 179

               
               
               Conread position:389-693
               
               
               Cow position:chrX:12008206-12007901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):274, 28

               
               
               Conread position:389-775
               
               
               Cow position:chrX:12111184-12110784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:257
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):179, 244

               
               
               Conread position:389-777
               
               
               Cow position:chrX:19742038-19741634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:266
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):99, 374

               
               
               Conread position:389-777
               
               
               Cow position:chrX:36294608-36295002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):87, 236

               
               
               Conread position:390-540
               
               
               Cow position:chrX:46040726-46040877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:390-777
               
               
               Cow position:chrX:9651571-9651171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 294

               
               
               Conread position:393-507
               
               
               Cow position:chrX:1185623-1185737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:393-573
               
               
               Cow position:chrX:31435805-31435984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:144
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:393-672
               
               
               Cow position:chrX:39294631-39294916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):154, 83

               
               
               Conread position:393-693
               
               
               Cow position:chrX:18152779-18152477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):152, 51

               
               
               Conread position:393-693
               
               
               Cow position:chrX:21973417-21973720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):29, 18

               
               
               Conread position:393-693
               
               
               Cow position:chrX:27105410-27105105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):154, 15

               
               
               Conread position:393-725
               
               
               Cow position:chrX:48423413-48423747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 316

               
               
               Conread position:393-777
               
               
               Cow position:chrX:37105647-37106047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):154, 194

               
               
               Conread position:393-782
               
               
               Cow position:chrX:2418005-2417604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 101

               
               
               Conread position:393-782
               
               
               Cow position:chrX:22772133-22772535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 159

               
               
               Conread position:393-782
               
               
               Cow position:chrX:42591203-42591605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):271, 0

               
               
               Conread position:393-785
               
               
               Cow position:chrX:4415328-4415723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 68

               
               
               Conread position:394-677
               
               
               Cow position:chrX:33707877-33708156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):168, 100

               
               
               Conread position:394-710
               
               
               Cow position:chrX:13460437-13460106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):51, 101

               
               
               Conread position:395-594
               
               
               Cow position:chrX:38793976-38794177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):150, 99

               
               
               Conread position:395-601
               
               
               Cow position:chrX:38584207-38584413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:163
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):150, 157

               
               
               Conread position:395-616
               
               
               Cow position:chrX:19333665-19333444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 157

               
               
               Conread position:395-643
               
               
               Cow position:chrX:39125791-39126048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 83

               
               
               Conread position:395-665
               
               
               Cow position:chrX:3471202-3471477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 199

               
               
               Conread position:395-680
               
               
               Cow position:chrX:30429868-30429560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):86, 49

               
               
               Conread position:395-692
               
               
               Cow position:chrX:26844988-26845292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):134, 25

               
               
               Conread position:395-693
               
               
               Cow position:chrX:39316626-39316331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):160, 76

               
               
               Conread position:395-693
               
               
               Cow position:chrX:40717420-40717718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):188, 134

               
               
               Conread position:395-756
               
               
               Cow position:chrX:23218553-23218930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:395-766
               
               
               Cow position:chrX:16354876-16354486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:253
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:395-767
               
               
               Cow position:chrX:3208080-3207699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:395-767
               
               
               Cow position:chrX:25205184-25205581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:275
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):55, 66

               
               
               Conread position:395-1022
               
               
               Cow position:chrX:42470456-42469810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:651
               
               
               Alignm identity:476
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):269, 53

               
               
               Conread position:395-1123
               
               
               Cow position:chrX:31949449-31948699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:754
               
               
               Alignm identity:549
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):268, 81

               
               
               Conread position:396-1061
               
               
               Cow position:chrX:40481389-40480695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:518
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):267, 104

               
               
               Conread position:397-690
               
               
               Cow position:chrX:21765081-21765381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 98

               
               
               Conread position:397-693
               
               
               Cow position:chrX:20538761-20539051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):108, 24

               
               
               Conread position:397-693
               
               
               Cow position:chrX:27749527-27749228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):266, 0

               
               
               Conread position:397-1035
               
               
               Cow position:chrX:4044362-4043723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:670
               
               
               Alignm identity:474
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 16

               
               
               Conread position:398-538
               
               
               Cow position:chrX:42380358-42380218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:398-555
               
               
               Cow position:chrX:24293215-24293063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:398-761
               
               
               Cow position:chrX:19636395-19636766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):153, 111

               
               
               Conread position:398-761
               
               
               Cow position:chrX:25150671-25151052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):149, 42

               
               
               Conread position:398-822
               
               
               Cow position:chrX:4156080-4155646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):226, 160

               
               
               Conread position:398-881
               
               
               Cow position:chrX:3154776-3154254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:525
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 180

               
               
               Conread position:399-628
               
               
               Cow position:chrX:30833944-30833709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:186
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):110, 29

               
               
               Conread position:399-782
               
               
               Cow position:chrX:25277015-25276619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 154

               
               
               Conread position:400-555
               
               
               Cow position:chrX:24174202-24174049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:400-682
               
               
               Cow position:chrX:38548892-38549181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:400-772
               
               
               Cow position:chrX:37014565-37014944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:251
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:400-910
               
               
               Cow position:chrX:32743030-32743557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:535
               
               
               Alignm identity:384
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 99

               
               
               Conread position:401-810
               
               
               Cow position:chrX:19595752-19596176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):146, 52

               
               
               Conread position:402-646
               
               
               Cow position:chrX:21025553-21025311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):96, 140

               
               
               Conread position:402-665
               
               
               Cow position:chrX:41754204-41754470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:402-782
               
               
               Cow position:chrX:3157105-3157498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 150

               
               
               Conread position:403-526
               
               
               Cow position:chrX:15836185-15836063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:403-693
               
               
               Cow position:chrX:30093876-30093586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:403-898
               
               
               Cow position:chrX:25337690-25338193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:530
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):260, 16

               
               
               Conread position:404-541
               
               
               Cow position:chrX:46824250-46824115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:404-657
               
               
               Cow position:chrX:46701599-46701351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:404-932
               
               
               Cow position:chrX:42994112-42994653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:424
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 51

               
               
               Conread position:407-546
               
               
               Cow position:chrX:41238826-41238689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:407-680
               
               
               Cow position:chrX:36557269-36557555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:410-515
               
               
               Cow position:chrX:2963767-2963663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:410-810
               
               
               Cow position:chrX:3161518-3161099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 101

               
               
               Conread position:410-1051
               
               
               Cow position:chrX:5871812-5872477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:674
               
               
               Alignm identity:504
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 111

               
               
               Conread position:411-515
               
               
               Cow position:chrX:21666834-21666730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:411-757
               
               
               Cow position:chrX:19447857-19447492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:411-761
               
               
               Cow position:chrX:17082913-17082550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):146, 52

               
               
               Conread position:411-766
               
               
               Cow position:chrX:529294-529661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:251
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:411-766
               
               
               Cow position:chrX:25925057-25924675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:264
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 184

               
               
               Conread position:411-777
               
               
               Cow position:chrX:43789361-43788985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 15

               
               
               Conread position:411-782
               
               
               Cow position:chrX:14133973-14134355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 17

               
               
               Conread position:411-782
               
               
               Cow position:chrX:22077824-22078207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):253, 9

               
               
               Conread position:411-819
               
               
               Cow position:chrX:17965020-17964596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 121

               
               
               Conread position:412-662
               
               
               Cow position:chrX:38934751-38935002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:412-662
               
               
               Cow position:chrX:38940873-38941124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:412-734
               
               
               Cow position:chrX:8325773-8326088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):251, 97

               
               
               Conread position:412-773
               
               
               Cow position:chrX:2351559-2351931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 0

               
               
               Conread position:412-780
               
               
               Cow position:chrX:3387603-3387984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 140

               
               
               Conread position:412-823
               
               
               Cow position:chrX:20976570-20976147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):135, 378

               
               
               Conread position:412-1103
               
               
               Cow position:chrX:34238218-34238938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:533
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 18

               
               
               Conread position:413-546
               
               
               Cow position:chrX:7381758-7381892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:413-780
               
               
               Cow position:chrX:45786628-45787006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):254, 0

               
               
               Conread position:413-1116
               
               
               Cow position:chrX:8869887-8869176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:727
               
               
               Alignm identity:509
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 149

               
               
               Conread position:414-551
               
               
               Cow position:chrX:40790031-40789896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:414-663
               
               
               Cow position:chrX:31745998-31745749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:414-680
               
               
               Cow position:chrX:12980848-12980583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 0

               
               
               Conread position:414-777
               
               
               Cow position:chrX:13030142-13029787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):294, 263

               
               
               Conread position:414-988
               
               
               Cow position:chrX:27105757-27106356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:606
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 517

               
               
               Conread position:414-1002
               
               
               Cow position:chrX:35223802-35224407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:612
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):259, 6

               
               
               Conread position:414-1066
               
               
               Cow position:chrX:34754693-34754001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:502
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):255, 495

               
               
               Conread position:415-539
               
               
               Cow position:chrX:4795008-4794884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:415-725
               
               
               Cow position:chrX:12691159-12690848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):249, 283

               
               
               Conread position:415-782
               
               
               Cow position:chrX:47317906-47318286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 137

               
               
               Conread position:415-1152
               
               
               Cow position:chrX:15232132-15231393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:760
               
               
               Alignm identity:503
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:416-610
               
               
               Cow position:chrX:31251766-31251960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:416-693
               
               
               Cow position:chrX:19022942-19023200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:417-539
               
               
               Cow position:chrX:20789244-20789124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:417-598
               
               
               Cow position:chrX:18215433-18215615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:145
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:417-634
               
               
               Cow position:chrX:48013985-48014214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 46

               
               
               Conread position:417-647
               
               
               Cow position:chrX:36133709-36133479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 174

               
               
               Conread position:417-692
               
               
               Cow position:chrX:37572666-37572944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 0

               
               
               Conread position:417-1116
               
               
               Cow position:chrX:34532033-34532739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:716
               
               
               Alignm identity:512
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):246, 397

               
               
               Conread position:418-775
               
               
               Cow position:chrX:42841554-42841180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):142, 10

               
               
               Conread position:418-1086
               
               
               Cow position:chrX:13648281-13647586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:497
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):245, 405

               
               
               Conread position:419-693
               
               
               Cow position:chrX:35694543-35694826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):143, 126

               
               
               Conread position:419-1116
               
               
               Cow position:chrX:9252667-9251935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:743
               
               
               Alignm identity:525
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 113

               
               
               Conread position:420-690
               
               
               Cow position:chrX:43980250-43980529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):142, 232

               
               
               Conread position:420-692
               
               
               Cow position:chrX:15379879-15380160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):131, 257

               
               
               Conread position:420-761
               
               
               Cow position:chrX:4566425-4566070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 169

               
               
               Conread position:420-762
               
               
               Cow position:chrX:32803361-32803035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):293, 126

               
               
               Conread position:420-773
               
               
               Cow position:chrX:21862165-21861801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 188

               
               
               Conread position:420-881
               
               
               Cow position:chrX:16790312-16789861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 140

               
               
               Conread position:420-932
               
               
               Cow position:chrX:12115546-12116087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:543
               
               
               Alignm identity:404
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):243, 517

               
               
               Conread position:420-1116
               
               
               Cow position:chrX:12437727-12437055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):272, 21

               
               
               Conread position:421-1113
               
               
               Cow position:chrX:47873822-47873111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:731
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 21

               
               
               Conread position:422-541
               
               
               Cow position:chrX:11844857-11844739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:422-680
               
               
               Cow position:chrX:38840357-38840626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 13

               
               
               Conread position:422-782
               
               
               Cow position:chrX:24969309-24968936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 0

               
               
               Conread position:423-761
               
               
               Cow position:chrX:18684287-18684632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):133, 116

               
               
               Conread position:423-777
               
               
               Cow position:chrX:626533-626170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 35

               
               
               Conread position:424-779
               
               
               Cow position:chrX:26787834-26788199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:236
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 22

               
               
               Conread position:424-779
               
               
               Cow position:chrX:29864922-29864555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):239, 0

               
               
               Conread position:424-782
               
               
               Cow position:chrX:5599469-5599098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 129

               
               
               Conread position:425-693
               
               
               Cow position:chrX:15591112-15591386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):123, 86

               
               
               Conread position:425-761
               
               
               Cow position:chrX:38832401-38832070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):191, 56

               
               
               Conread position:426-663
               
               
               Cow position:chrX:47243794-47243555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 160

               
               
               Conread position:426-692
               
               
               Cow position:chrX:13266319-13266044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 79

               
               
               Conread position:426-1102
               
               
               Cow position:chrX:35272878-35273586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:722
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 176

               
               
               Conread position:429-515
               
               
               Cow position:chrX:42247901-42247815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:87
               
               
               Alignm identity:76
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:429-585
               
               
               Cow position:chrX:777028-777185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:429-655
               
               
               Cow position:chrX:28214848-28215079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:429-663
               
               
               Cow position:chrX:25425647-25425886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 166

               
               
               Conread position:429-682
               
               
               Cow position:chrX:11455553-11455302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:429-712
               
               
               Cow position:chrX:26728369-26728652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 123

               
               
               Conread position:429-761
               
               
               Cow position:chrX:23514961-23514614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):128, 52

               
               
               Conread position:429-782
               
               
               Cow position:chrX:43510930-43511299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 0

               
               
               Conread position:429-818
               
               
               Cow position:chrX:9403616-9404031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):113, 168

               
               
               Conread position:431-598
               
               
               Cow position:chrX:29859431-29859264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:431-761
               
               
               Cow position:chrX:16229461-16229118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:229
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):119, 94

               
               
               Conread position:431-777
               
               
               Cow position:chrX:27760857-27761215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 79

               
               
               Conread position:431-782
               
               
               Cow position:chrX:37403507-37403142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 122

               
               
               Conread position:433-1112
               
               
               Cow position:chrX:14974220-14973533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:705
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 232

               
               
               Conread position:434-692
               
               
               Cow position:chrX:31385236-31385495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:198
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 235

               
               
               Conread position:434-860
               
               
               Cow position:chrX:18551425-18551851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):111, 118

               
               
               Conread position:434-1104
               
               
               Cow position:chrX:15596571-15597244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:699
               
               
               Alignm identity:485
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):262, 64

               
               
               Conread position:436-663
               
               
               Cow position:chrX:42381908-42381680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 99

               
               
               Conread position:436-824
               
               
               Cow position:chrX:21319213-21319607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 194

               
               
               Conread position:437-677
               
               
               Cow position:chrX:22590762-22591000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:437-777
               
               
               Cow position:chrX:44086826-44087180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 123

               
               
               Conread position:437-780
               
               
               Cow position:chrX:16713719-16714075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 115

               
               
               Conread position:437-809
               
               
               Cow position:chrX:28516314-28515937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):110, 38

               
               
               Conread position:437-818
               
               
               Cow position:chrX:24193639-24194031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:268
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):223, 39

               
               
               Conread position:437-1053
               
               
               Cow position:chrX:18695403-18694770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:644
               
               
               Alignm identity:469
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 56

               
               
               Conread position:438-1015
               
               
               Cow position:chrX:36219059-36219650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:601
               
               
               Alignm identity:384
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):226, 56

               
               
               Conread position:439-693
               
               
               Cow position:chrX:31342722-31342967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:439-760
               
               
               Cow position:chrX:28855020-28855349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):111, 150

               
               
               Conread position:439-860
               
               
               Cow position:chrX:48287907-48287482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 127

               
               
               Conread position:439-1112
               
               
               Cow position:chrX:17794517-17795203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:696
               
               
               Alignm identity:483
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 234

               
               
               Conread position:440-644
               
               
               Cow position:chrX:33799423-33799623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:440-736
               
               
               Cow position:chrX:47654829-47655132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 0

               
               
               Conread position:440-767
               
               
               Cow position:chrX:5127454-5127780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):118, 58

               
               
               Conread position:440-1015
               
               
               Cow position:chrX:16706324-16706923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:608
               
               
               Alignm identity:393
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 112

               
               
               Conread position:440-1105
               
               
               Cow position:chrX:13868230-13868921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:704
               
               
               Alignm identity:507
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 51

               
               
               Conread position:441-940
               
               
               Cow position:chrX:48243925-48243417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:518
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 53

               
               
               Conread position:442-777
               
               
               Cow position:chrX:41306107-41305760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:443-779
               
               
               Cow position:chrX:8926242-8926593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:227
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):107, 197

               
               
               Conread position:443-1054
               
               
               Cow position:chrX:27516065-27516683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:636
               
               
               Alignm identity:463
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 10

               
               
               Conread position:444-610
               
               
               Cow position:chrX:21794463-21794624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):101, 50

               
               
               Conread position:444-639
               
               
               Cow position:chrX:16049238-16049437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):104, 88

               
               
               Conread position:444-682
               
               
               Cow position:chrX:22623981-22624223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:176
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:444-819
               
               
               Cow position:chrX:25302206-25301827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):190, 50

               
               
               Conread position:445-761
               
               
               Cow position:chrX:39288645-39288311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:446-782
               
               
               Cow position:chrX:28058263-28057915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 48

               
               
               Conread position:447-691
               
               
               Cow position:chrX:24260081-24259833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):124, 232

               
               
               Conread position:447-730
               
               
               Cow position:chrX:38067181-38066887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:448-738
               
               
               Cow position:chrX:47965466-47965151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 85

               
               
               Conread position:448-938
               
               
               Cow position:chrX:32128461-32127946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:381
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 409

               
               
               Conread position:449-881
               
               
               Cow position:chrX:30162544-30162988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:460
               
               
               Alignm identity:319
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):117, 32

               
               
               Conread position:450-679
               
               
               Cow position:chrX:27679886-27680128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:452-782
               
               
               Cow position:chrX:1781442-1781785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 100

               
               
               Conread position:452-782
               
               
               Cow position:chrX:34413313-34413656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 100

               
               
               Conread position:453-622
               
               
               Cow position:chrX:42281935-42282111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:453-761
               
               
               Cow position:chrX:24169782-24169458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:236
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):92, 141

               
               
               Conread position:453-761
               
               
               Cow position:chrX:40322451-40322773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):97, 72

               
               
               Conread position:453-999
               
               
               Cow position:chrX:40180333-40179771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:375
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 440

               
               
               Conread position:453-1027
               
               
               Cow position:chrX:917839-917232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:615
               
               
               Alignm identity:431
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 384

               
               
               Conread position:455-693
               
               
               Cow position:chrX:11377109-11377354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:177
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):103, 185

               
               
               Conread position:455-782
               
               
               Cow position:chrX:7311533-7311873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 0

               
               
               Conread position:455-782
               
               
               Cow position:chrX:11663718-11664058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 97

               
               
               Conread position:455-782
               
               
               Cow position:chrX:30981628-30981285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:455-782
               
               
               Cow position:chrX:34285524-34285183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 98

               
               
               Conread position:455-813
               
               
               Cow position:chrX:27019745-27020111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 149

               
               
               Conread position:456-815
               
               
               Cow position:chrX:23696881-23696489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:274
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):106, 176

               
               
               Conread position:456-1127
               
               
               Cow position:chrX:45501685-45502375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:707
               
               
               Alignm identity:484
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 376

               
               
               Conread position:457-761
               
               
               Cow position:chrX:39952800-39952494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 222

               
               
               Conread position:458-663
               
               
               Cow position:chrX:4553899-4554120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:458-693
               
               
               Cow position:chrX:42530363-42530130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:458-777
               
               
               Cow position:chrX:13922985-13923289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:229
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):204, 46

               
               
               Conread position:458-782
               
               
               Cow position:chrX:27626898-27627235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):206, 0

               
               
               Conread position:459-668
               
               
               Cow position:chrX:27002204-27002412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):113, 54

               
               
               Conread position:459-824
               
               
               Cow position:chrX:24200739-24201114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 118

               
               
               Conread position:460-782
               
               
               Cow position:chrX:6652526-6652192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 34

               
               
               Conread position:461-693
               
               
               Cow position:chrX:16222172-16222406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:461-841
               
               
               Cow position:chrX:35633208-35632805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 56

               
               
               Conread position:461-985
               
               
               Cow position:chrX:23299501-23300052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:557
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:462-782
               
               
               Cow position:chrX:7444631-7444963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 326

               
               
               Conread position:462-1068
               
               
               Cow position:chrX:24288366-24287757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:622
               
               
               Alignm identity:429
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 259

               
               
               Conread position:463-636
               
               
               Cow position:chrX:30729950-30729775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):97, 17

               
               
               Conread position:463-678
               
               
               Cow position:chrX:45566156-45566374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:463-782
               
               
               Cow position:chrX:11672329-11672661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 0

               
               
               Conread position:463-940
               
               
               Cow position:chrX:8899573-8900074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:374
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 102

               
               
               Conread position:464-1116
               
               
               Cow position:chrX:38094976-38094298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:691
               
               
               Alignm identity:514
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 287

               
               
               Conread position:464-1124
               
               
               Cow position:chrX:23564248-23563554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:698
               
               
               Alignm identity:492
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 444

               
               
               Conread position:465-763
               
               
               Cow position:chrX:1947171-1946862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):198, 0

               
               
               Conread position:465-1038
               
               
               Cow position:chrX:3130116-3130718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:610
               
               
               Alignm identity:415
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):182, 29

               
               
               Conread position:466-627
               
               
               Cow position:chrX:19210844-19210678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):94, 28

               
               
               Conread position:466-657
               
               
               Cow position:chrX:39015607-39015421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:466-682
               
               
               Cow position:chrX:41884885-41884670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):33, 27

               
               
               Conread position:466-792
               
               
               Cow position:chrX:18118920-18118583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 101

               
               
               Conread position:467-646
               
               
               Cow position:chrX:9072766-9072950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 27

               
               
               Conread position:467-736
               
               
               Cow position:chrX:42222016-42221741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 273

               
               
               Conread position:467-767
               
               
               Cow position:chrX:13686270-13686578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:219
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):197, 14

               
               
               Conread position:467-792
               
               
               Cow position:chrX:2945318-2944979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:468-624
               
               
               Cow position:chrX:20709586-20709747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):86, 26

               
               
               Conread position:469-881
               
               
               Cow position:chrX:21666037-21665603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):198, 179

               
               
               Conread position:470-680
               
               
               Cow position:chrX:1729020-1728803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:470-766
               
               
               Cow position:chrX:37575865-37576178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:470-818
               
               
               Cow position:chrX:160484-160111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 28

               
               
               Conread position:470-823
               
               
               Cow position:chrX:36692794-36693165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):106, 89

               
               
               Conread position:470-884
               
               
               Cow position:chrX:38936247-38936691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 24

               
               
               Conread position:471-761
               
               
               Cow position:chrX:19320141-19320445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:201
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:471-782
               
               
               Cow position:chrX:7742901-7742577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):74, 82

               
               
               Conread position:472-663
               
               
               Cow position:chrX:40035912-40035723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:472-782
               
               
               Cow position:chrX:13396694-13396372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):73, 42

               
               
               Conread position:473-948
               
               
               Cow position:chrX:10438093-10437610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 209

               
               
               Conread position:473-1120
               
               
               Cow position:chrX:28847324-28846661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:686
               
               
               Alignm identity:491
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 428

               
               
               Conread position:474-723
               
               
               Cow position:chrX:43049681-43049917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):237, 31

               
               
               Conread position:474-1057
               
               
               Cow position:chrX:28133908-28134504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:607
               
               
               Alignm identity:422
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 431

               
               
               Conread position:475-779
               
               
               Cow position:chrX:13384967-13385284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 77

               
               
               Conread position:475-782
               
               
               Cow position:chrX:23139873-23140190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):70, 77

               
               
               Conread position:475-782
               
               
               Cow position:chrX:47607973-47608294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 79

               
               
               Conread position:476-693
               
               
               Cow position:chrX:30134928-30134705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:476-1023
               
               
               Cow position:chrX:37231972-37232539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:578
               
               
               Alignm identity:421
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 350

               
               
               Conread position:477-693
               
               
               Cow position:chrX:41377173-41377389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 75

               
               
               Conread position:477-809
               
               
               Cow position:chrX:40515467-40515808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):83, 45

               
               
               Conread position:477-1054
               
               
               Cow position:chrX:5017842-5017262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:600
               
               
               Alignm identity:423
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):188, 32

               
               
               Conread position:481-717
               
               
               Cow position:chrX:16530487-16530733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):70, 198

               
               
               Conread position:482-663
               
               
               Cow position:chrX:12756369-12756187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):84, 12

               
               
               Conread position:485-679
               
               
               Cow position:chrX:31338509-31338707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 122

               
               
               Conread position:485-779
               
               
               Cow position:chrX:17980165-17980472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:485-782
               
               
               Cow position:chrX:13447840-13448150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:225
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):60, 67

               
               
               Conread position:485-782
               
               
               Cow position:chrX:20321197-20320888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):87, 81

               
               
               Conread position:485-782
               
               
               Cow position:chrX:24809400-24809091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):179, 224

               
               
               Conread position:485-782
               
               
               Cow position:chrX:46579285-46578975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:485-909
               
               
               Cow position:chrX:36840431-36840889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:310
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):75, 405

               
               
               Conread position:485-987
               
               
               Cow position:chrX:26441210-26440689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 429

               
               
               Conread position:487-782
               
               
               Cow position:chrX:19674220-19674528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):58, 65

               
               
               Conread position:488-1015
               
               
               Cow position:chrX:25568806-25568266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:547
               
               
               Alignm identity:343
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):60, 65

               
               
               Conread position:489-761
               
               
               Cow position:chrX:23034465-23034753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 8

               
               
               Conread position:490-663
               
               
               Cow position:chrX:16284405-16284226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:490-666
               
               
               Cow position:chrX:41682930-41683112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:490-760
               
               
               Cow position:chrX:37544517-37544803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:490-818
               
               
               Cow position:chrX:24886913-24886583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):172, 61

               
               
               Conread position:490-823
               
               
               Cow position:chrX:25966624-25966968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):67, 226

               
               
               Conread position:490-1115
               
               
               Cow position:chrX:15486050-15485406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:658
               
               
               Alignm identity:471
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 428

               
               
               Conread position:491-635
               
               
               Cow position:chrX:11590046-11589904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:491-656
               
               
               Cow position:chrX:16689107-16689272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:491-663
               
               
               Cow position:chrX:45448232-45448404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:491-682
               
               
               Cow position:chrX:20167729-20167924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:491-687
               
               
               Cow position:chrX:44206861-44207054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):168, 18

               
               
               Conread position:491-693
               
               
               Cow position:chrX:3079011-3078806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):54, 62

               
               
               Conread position:491-755
               
               
               Cow position:chrX:17887942-17888209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):61, 54

               
               
               Conread position:491-773
               
               
               Cow position:chrX:6654741-6654433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:491-777
               
               
               Cow position:chrX:9970498-9970791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:491-780
               
               
               Cow position:chrX:12810690-12810996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 15

               
               
               Conread position:491-782
               
               
               Cow position:chrX:14134757-14135061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:210
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:491-782
               
               
               Cow position:chrX:23047356-23047658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):54, 61

               
               
               Conread position:491-786
               
               
               Cow position:chrX:24102555-24102864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:491-791
               
               
               Cow position:chrX:12096670-12096361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 92

               
               
               Conread position:491-818
               
               
               Cow position:chrX:10916324-10916671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 277

               
               
               Conread position:491-851
               
               
               Cow position:chrX:48370671-48371055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 338

               
               
               Conread position:491-870
               
               
               Cow position:chrX:38967227-38967628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 156

               
               
               Conread position:491-873
               
               
               Cow position:chrX:39556240-39555854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 27

               
               
               Conread position:491-880
               
               
               Cow position:chrX:48247261-48246860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 150

               
               
               Conread position:491-884
               
               
               Cow position:chrX:19019519-19019111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 186

               
               
               Conread position:491-1063
               
               
               Cow position:chrX:14599112-14599704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:604
               
               
               Alignm identity:448
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 118

               
               
               Conread position:494-666
               
               
               Cow position:chrX:1332456-1332278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:494-682
               
               
               Cow position:chrX:39071263-39071451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):177, 58

               
               
               Conread position:494-782
               
               
               Cow position:chrX:11975908-11975615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):169, 215

               
               
               Conread position:494-782
               
               
               Cow position:chrX:19495381-19495080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):51, 59

               
               
               Conread position:494-819
               
               
               Cow position:chrX:17271704-17271362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:494-1026
               
               
               Cow position:chrX:42171720-42171162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:564
               
               
               Alignm identity:400
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 342

               
               
               Conread position:494-1054
               
               
               Cow position:chrX:43730612-43730061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:573
               
               
               Alignm identity:408
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 54

               
               
               Conread position:494-1112
               
               
               Cow position:chrX:21626381-21625724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:664
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 424

               
               
               Conread position:495-678
               
               
               Cow position:chrX:32419770-32419952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:152
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):88, 9

               
               
               Conread position:495-682
               
               
               Cow position:chrX:22284088-22284281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:495-766
               
               
               Cow position:chrX:40581566-40581852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):10, 25

               
               
               Conread position:495-776
               
               
               Cow position:chrX:42142053-42141767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):57, 235

               
               
               Conread position:495-1104
               
               
               Cow position:chrX:1616477-1615842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:466
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 342

               
               
               Conread position:496-680
               
               
               Cow position:chrX:15344004-15344193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:496-782
               
               
               Cow position:chrX:38442543-38442842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):49, 56

               
               
               Conread position:496-785
               
               
               Cow position:chrX:19772038-19771746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 182

               
               
               Conread position:496-1137
               
               
               Cow position:chrX:21063879-21064534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:676
               
               
               Alignm identity:460
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 18

               
               
               Conread position:497-679
               
               
               Cow position:chrX:38641783-38641960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):166, 50

               
               
               Conread position:497-711
               
               
               Cow position:chrX:36351455-36351670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):7, 56

               
               
               Conread position:498-794
               
               
               Cow position:chrX:47219672-47219364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):163, 294

               
               
               Conread position:498-807
               
               
               Cow position:chrX:15341449-15341134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:499-643
               
               
               Cow position:chrX:16416046-16416195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):55, 38

               
               
               Conread position:499-656
               
               
               Cow position:chrX:28878671-28878513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):116, 61

               
               
               Conread position:499-925
               
               
               Cow position:chrX:11581521-11581966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 92

               
               
               Conread position:500-680
               
               
               Cow position:chrX:34663275-34663095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):87, 175

               
               
               Conread position:500-782
               
               
               Cow position:chrX:45467635-45467339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:500-783
               
               
               Cow position:chrX:2362083-2362380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:501-693
               
               
               Cow position:chrX:34006899-34007094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:501-782
               
               
               Cow position:chrX:32010617-32010911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:501-785
               
               
               Cow position:chrX:38577118-38577411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 184

               
               
               Conread position:502-777
               
               
               Cow position:chrX:21495345-21495633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:209
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:502-777
               
               
               Cow position:chrX:37377673-37377393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 61

               
               
               Conread position:503-663
               
               
               Cow position:chrX:6277873-6277708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:503-693
               
               
               Cow position:chrX:36373131-36373325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):14, 50

               
               
               Conread position:503-729
               
               
               Cow position:chrX:5856929-5856691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 20

               
               
               Conread position:504-633
               
               
               Cow position:chrX:48021002-48020872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:504-662
               
               
               Cow position:chrX:14050395-14050553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:504-782
               
               
               Cow position:chrX:10992207-10992498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:216
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):41, 48

               
               
               Conread position:504-1116
               
               
               Cow position:chrX:42247592-42246953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:645
               
               
               Alignm identity:488
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:505-625
               
               
               Cow position:chrX:42242883-42242764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:505-682
               
               
               Cow position:chrX:4943417-4943238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):59, 173

               
               
               Conread position:505-767
               
               
               Cow position:chrX:17282405-17282127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):49, 272

               
               
               Conread position:505-824
               
               
               Cow position:chrX:48224598-48224256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:505-1049
               
               
               Cow position:chrX:17888798-17888265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:563
               
               
               Alignm identity:389
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 129

               
               
               Conread position:505-1051
               
               
               Cow position:chrX:8796841-8797409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:577
               
               
               Alignm identity:432
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 120

               
               
               Conread position:505-1127
               
               
               Cow position:chrX:20888054-20887410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:657
               
               
               Alignm identity:467
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 250

               
               
               Conread position:506-732
               
               
               Cow position:chrX:43199021-43199263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:506-893
               
               
               Cow position:chrX:25946249-25945828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 18

               
               
               Conread position:506-1137
               
               
               Cow position:chrX:15147591-15146947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:666
               
               
               Alignm identity:479
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 63

               
               
               Conread position:507-777
               
               
               Cow position:chrX:16529597-16529880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:507-779
               
               
               Cow position:chrX:2499747-2499463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):163, 25

               
               
               Conread position:507-782
               
               
               Cow position:chrX:828472-828771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):88, 160

               
               
               Conread position:507-1116
               
               
               Cow position:chrX:34376546-34377167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:637
               
               
               Alignm identity:436
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 67

               
               
               Conread position:507-1157
               
               
               Cow position:chrX:39174621-39173945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:683
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 385

               
               
               Conread position:509-657
               
               
               Cow position:chrX:4177651-4177798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:509-679
               
               
               Cow position:chrX:7341398-7341573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:509-778
               
               
               Cow position:chrX:14409794-14409511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:509-782
               
               
               Cow position:chrX:15504885-15505171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):36, 43

               
               
               Conread position:509-830
               
               
               Cow position:chrX:25452144-25452481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):154, 109

               
               
               Conread position:510-649
               
               
               Cow position:chrX:14901390-14901246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 71

               
               
               Conread position:510-896
               
               
               Cow position:chrX:42587834-42587423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):153, 317

               
               
               Conread position:510-947
               
               
               Cow position:chrX:34192277-34192726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:457
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 22

               
               
               Conread position:510-1033
               
               
               Cow position:chrX:23583153-23583705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 409

               
               
               Conread position:511-663
               
               
               Cow position:chrX:41083499-41083653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:511-1015
               
               
               Cow position:chrX:15590276-15589750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 403

               
               
               Conread position:512-782
               
               
               Cow position:chrX:10495830-10496113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 40

               
               
               Conread position:512-782
               
               
               Cow position:chrX:12776389-12776106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:512-782
               
               
               Cow position:chrX:29066049-29066317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):182, 118

               
               
               Conread position:512-782
               
               
               Cow position:chrX:44557676-44557959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:512-1112
               
               
               Cow position:chrX:6413643-6414256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:633
               
               
               Alignm identity:425
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 235

               
               
               Conread position:513-663
               
               
               Cow position:chrX:33519177-33519327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):82, 89

               
               
               Conread position:513-665
               
               
               Cow position:chrX:45599301-45599149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:513-693
               
               
               Cow position:chrX:10831914-10831731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):39, 35

               
               
               Conread position:513-767
               
               
               Cow position:chrX:29723049-29723311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 243

               
               
               Conread position:513-852
               
               
               Cow position:chrX:45674442-45674807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 119

               
               
               Conread position:513-974
               
               
               Cow position:chrX:42508046-42507565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:513-1014
               
               
               Cow position:chrX:44737393-44736878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:531
               
               
               Alignm identity:347
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):149, 373

               
               
               Conread position:513-1015
               
               
               Cow position:chrX:7054134-7053612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:353
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):156, 55

               
               
               Conread position:513-1029
               
               
               Cow position:chrX:30543689-30543146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:551
               
               
               Alignm identity:395
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 19

               
               
               Conread position:514-663
               
               
               Cow position:chrX:44839781-44839930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:514-775
               
               
               Cow position:chrX:36678074-36677799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:188
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:514-778
               
               
               Cow position:chrX:22325672-22325950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):43, 9

               
               
               Conread position:514-782
               
               
               Cow position:chrX:9593536-9593255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:514-787
               
               
               Cow position:chrX:19196919-19196633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:514-831
               
               
               Cow position:chrX:31450021-31449682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):150, 34

               
               
               Conread position:514-1112
               
               
               Cow position:chrX:22821013-22821661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:652
               
               
               Alignm identity:423
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):153, 403

               
               
               Conread position:515-663
               
               
               Cow position:chrX:48221322-48221174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:515-700
               
               
               Cow position:chrX:17010702-17010513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:515-799
               
               
               Cow position:chrX:37205313-37205627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:224
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):33, 243

               
               
               Conread position:516-712
               
               
               Cow position:chrX:38668039-38667833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:516-820
               
               
               Cow position:chrX:21795096-21795420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:516-830
               
               
               Cow position:chrX:32584210-32583874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):151, 51

               
               
               Conread position:516-931
               
               
               Cow position:chrX:126386-126811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 313

               
               
               Conread position:516-1015
               
               
               Cow position:chrX:21749857-21749338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 100

               
               
               Conread position:517-817
               
               
               Cow position:chrX:44907918-44908240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):152, 119

               
               
               Conread position:517-1015
               
               
               Cow position:chrX:23024305-23024833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:532
               
               
               Alignm identity:343
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):56, 169

               
               
               Conread position:519-822
               
               
               Cow position:chrX:48248423-48248751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:236
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):41, 311

               
               
               Conread position:521-670
               
               
               Cow position:chrX:46721184-46721030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:521-690
               
               
               Cow position:chrX:12671881-12671709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):27, 32

               
               
               Conread position:521-782
               
               
               Cow position:chrX:5112950-5112676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:521-782
               
               
               Cow position:chrX:15561209-15560934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):143, 188

               
               
               Conread position:521-782
               
               
               Cow position:chrX:20617191-20616917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:521-785
               
               
               Cow position:chrX:40602570-40602845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:202
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:521-792
               
               
               Cow position:chrX:6655660-6655376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):146, 62

               
               
               Conread position:522-780
               
               
               Cow position:chrX:25741507-25741236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:522-826
               
               
               Cow position:chrX:32978650-32978323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 236

               
               
               Conread position:522-918
               
               
               Cow position:chrX:32309701-32310131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:299
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 328

               
               
               Conread position:524-682
               
               
               Cow position:chrX:27288139-27287975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:524-1054
               
               
               Cow position:chrX:34401607-34402168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:565
               
               
               Alignm identity:388
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):139, 112

               
               
               Conread position:525-793
               
               
               Cow position:chrX:40142590-40142311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 209

               
               
               Conread position:525-1112
               
               
               Cow position:chrX:38218328-38218937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:617
               
               
               Alignm identity:440
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 194

               
               
               Conread position:526-792
               
               
               Cow position:chrX:21062828-21063105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:196
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):141, 99

               
               
               Conread position:527-782
               
               
               Cow position:chrX:43979230-43979498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:527-884
               
               
               Cow position:chrX:39700825-39701217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:271
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):18, 314

               
               
               Conread position:527-1124
               
               
               Cow position:chrX:2300537-2301161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:426
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 299

               
               
               Conread position:528-780
               
               
               Cow position:chrX:34095174-34095439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:528-831
               
               
               Cow position:chrX:32188746-32188423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):135, 239

               
               
               Conread position:529-782
               
               
               Cow position:chrX:23235444-23235710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:531-808
               
               
               Cow position:chrX:31373194-31373478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 121

               
               
               Conread position:532-711
               
               
               Cow position:chrX:41198703-41198882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):144, 157

               
               
               Conread position:532-945
               
               
               Cow position:chrX:7718469-7718903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 296

               
               
               Conread position:532-1128
               
               
               Cow position:chrX:16722200-16721549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:656
               
               
               Alignm identity:426
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):44, 343

               
               
               Conread position:533-782
               
               
               Cow position:chrX:44851709-44851974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:189
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:535-1029
               
               
               Cow position:chrX:47054891-47054387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:341
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:536-663
               
               
               Cow position:chrX:10394265-10394391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:536-671
               
               
               Cow position:chrX:45228438-45228305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:536-1125
               
               
               Cow position:chrX:25035765-25035145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:628
               
               
               Alignm identity:451
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):133, 124

               
               
               Conread position:537-766
               
               
               Cow position:chrX:17691883-17692122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):126, 51

               
               
               Conread position:537-930
               
               
               Cow position:chrX:41743535-41743952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 373

               
               
               Conread position:538-992
               
               
               Cow position:chrX:19290395-19290863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:310
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):124, 304

               
               
               Conread position:538-1015
               
               
               Cow position:chrX:16289939-16289437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:507
               
               
               Alignm identity:332
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):132, 371

               
               
               Conread position:541-676
               
               
               Cow position:chrX:41167402-41167269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:542-1116
               
               
               Cow position:chrX:31250019-31250618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:602
               
               
               Alignm identity:434
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 78

               
               
               Conread position:545-682
               
               
               Cow position:chrX:1514796-1514656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 13

               
               
               Conread position:547-782
               
               
               Cow position:chrX:30950160-30950408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:547-945
               
               
               Cow position:chrX:28105558-28105972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 88

               
               
               Conread position:547-1054
               
               
               Cow position:chrX:11718146-11717618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:387
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 40

               
               
               Conread position:547-1068
               
               
               Cow position:chrX:34502555-34503104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:556
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 276

               
               
               Conread position:548-656
               
               
               Cow position:chrX:41673508-41673617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:90
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:548-668
               
               
               Cow position:chrX:22866887-22866767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:548-693
               
               
               Cow position:chrX:11583509-11583365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):125, 5

               
               
               Conread position:548-773
               
               
               Cow position:chrX:5292257-5292021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):117, 10

               
               
               Conread position:550-779
               
               
               Cow position:chrX:5640984-5640760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 123

               
               
               Conread position:550-782
               
               
               Cow position:chrX:15578006-15577761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:550-810
               
               
               Cow position:chrX:31058795-31059061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 130

               
               
               Conread position:551-658
               
               
               Cow position:chrX:40183999-40183892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:551-671
               
               
               Cow position:chrX:11412151-11412031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:551-682
               
               
               Cow position:chrX:46044656-46044784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:551-692
               
               
               Cow position:chrX:1823698-1823842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-692
               
               
               Cow position:chrX:19842246-19842106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:551-693
               
               
               Cow position:chrX:48490248-48490106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:551-761
               
               
               Cow position:chrX:32214825-32214614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 26

               
               
               Conread position:551-775
               
               
               Cow position:chrX:47362250-47362015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:551-777
               
               
               Cow position:chrX:22578524-22578293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):143, 66

               
               
               Conread position:551-777
               
               
               Cow position:chrX:30141689-30141450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:551-777
               
               
               Cow position:chrX:39386629-39386391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:551-779
               
               
               Cow position:chrX:27616474-27616709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):143, 122

               
               
               Conread position:551-779
               
               
               Cow position:chrX:48328751-48328510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-780
               
               
               Cow position:chrX:9096303-9096544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:551-780
               
               
               Cow position:chrX:36240031-36240271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:6828771-6829016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:7509773-7510016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 237

               
               
               Conread position:551-782
               
               
               Cow position:chrX:29508419-29508657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:30538516-30538272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:30863563-30863319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:30899752-30899507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:36479568-36479812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:37497811-37497567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:39548966-39549210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:44980401-44980158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:551-782
               
               
               Cow position:chrX:48165159-48165403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:176
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:551-785
               
               
               Cow position:chrX:27982509-27982264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:551-792
               
               
               Cow position:chrX:45399862-45399609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:551-830
               
               
               Cow position:chrX:12179604-12179900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:551-1015
               
               
               Cow position:chrX:40648302-40648774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 218

               
               
               Conread position:551-1022
               
               
               Cow position:chrX:46606862-46606377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:502
               
               
               Alignm identity:327
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):112, 37

               
               
               Conread position:551-1048
               
               
               Cow position:chrX:20697967-20697454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:380
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 124

               
               
               Conread position:551-1102
               
               
               Cow position:chrX:47343928-47344513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:588
               
               
               Alignm identity:403
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 302

               
               
               Conread position:551-1142
               
               
               Cow position:chrX:30338283-30337699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:613
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 62

               
               
               Conread position:551-1150
               
               
               Cow position:chrX:11844602-11843972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:634
               
               
               Alignm identity:456
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 200

               
               
               Conread position:552-777
               
               
               Cow position:chrX:10718147-10718384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:552-782
               
               
               Cow position:chrX:5739576-5739333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:552-782
               
               
               Cow position:chrX:43767899-43767657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):112, 16

               
               
               Conread position:552-782
               
               
               Cow position:chrX:47386294-47386052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:552-819
               
               
               Cow position:chrX:25283503-25283226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 110

               
               
               Conread position:552-825
               
               
               Cow position:chrX:11981757-11982062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:226
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):10, 286

               
               
               Conread position:552-837
               
               
               Cow position:chrX:48227982-48227668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:214
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:552-999
               
               
               Cow position:chrX:4864915-4865341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:297
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):159, 49

               
               
               Conread position:553-691
               
               
               Cow position:chrX:20787572-20787438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:553-693
               
               
               Cow position:chrX:20038580-20038437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:553-813
               
               
               Cow position:chrX:6659013-6659297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):58, 72

               
               
               Conread position:553-884
               
               
               Cow position:chrX:2786908-2786564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 285

               
               
               Conread position:553-908
               
               
               Cow position:chrX:25848553-25848930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 276

               
               
               Conread position:553-1046
               
               
               Cow position:chrX:11614359-11614847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 197

               
               
               Conread position:553-1063
               
               
               Cow position:chrX:630655-630138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:533
               
               
               Alignm identity:349
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):158, 50

               
               
               Conread position:554-693
               
               
               Cow position:chrX:40321266-40321410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:554-839
               
               
               Cow position:chrX:11806377-11806069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):115, 75

               
               
               Conread position:554-898
               
               
               Cow position:chrX:25419521-25419149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:262
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:554-1113
               
               
               Cow position:chrX:5118844-5118273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:412
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 190

               
               
               Conread position:554-1116
               
               
               Cow position:chrX:33855601-33854998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:614
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 78

               
               
               Conread position:554-1124
               
               
               Cow position:chrX:7178551-7179120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:587
               
               
               Alignm identity:418
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 181

               
               
               Conread position:555-667
               
               
               Cow position:chrX:6262791-6262679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:555-668
               
               
               Cow position:chrX:16542066-16541953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:555-693
               
               
               Cow position:chrX:45263428-45263287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:555-780
               
               
               Cow position:chrX:29877541-29877303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:555-782
               
               
               Cow position:chrX:39731153-39731393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:175
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:555-793
               
               
               Cow position:chrX:22873037-22873288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:555-823
               
               
               Cow position:chrX:7381964-7382251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 76

               
               
               Conread position:556-693
               
               
               Cow position:chrX:14009012-14008872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:556-782
               
               
               Cow position:chrX:35612903-35612665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 125

               
               
               Conread position:556-857
               
               
               Cow position:chrX:44731241-44731562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):140, 111

               
               
               Conread position:556-872
               
               
               Cow position:chrX:37843361-37843703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 322

               
               
               Conread position:557-1014
               
               
               Cow position:chrX:20029889-20030377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:318
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):110, 351

               
               
               Conread position:559-925
               
               
               Cow position:chrX:10306314-10306708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 372

               
               
               Conread position:560-780
               
               
               Cow position:chrX:24966914-24967147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:560-830
               
               
               Cow position:chrX:5808854-5809131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:560-1021
               
               
               Cow position:chrX:19689860-19690345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 52

               
               
               Conread position:561-704
               
               
               Cow position:chrX:47177949-47177802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:561-819
               
               
               Cow position:chrX:28787017-28787275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):108, 34

               
               
               Conread position:561-833
               
               
               Cow position:chrX:32747304-32747585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:214
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):106, 235

               
               
               Conread position:561-1063
               
               
               Cow position:chrX:36010246-36009741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:327
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):102, 192

               
               
               Conread position:562-686
               
               
               Cow position:chrX:32012409-32012283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:562-777
               
               
               Cow position:chrX:34333553-34333325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:562-782
               
               
               Cow position:chrX:44387637-44387865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):130, 98

               
               
               Conread position:562-1016
               
               
               Cow position:chrX:45945280-45945722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):132, 191

               
               
               Conread position:562-1070
               
               
               Cow position:chrX:20945215-20945745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:537
               
               
               Alignm identity:349
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):105, 204

               
               
               Conread position:563-782
               
               
               Cow position:chrX:14846426-14846194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:563-824
               
               
               Cow position:chrX:37299240-37299516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):57, 235

               
               
               Conread position:563-1003
               
               
               Cow position:chrX:47967248-47967719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:333
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:563-1015
               
               
               Cow position:chrX:48205265-48204794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:296
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):100, 342

               
               
               Conread position:564-782
               
               
               Cow position:chrX:22567179-22567412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:564-1068
               
               
               Cow position:chrX:46771323-46770786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:544
               
               
               Alignm identity:391
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 348

               
               
               Conread position:567-807
               
               
               Cow position:chrX:24231467-24231215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 68

               
               
               Conread position:567-884
               
               
               Cow position:chrX:25232238-25232585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):105, 261

               
               
               Conread position:568-667
               
               
               Cow position:chrX:26883496-26883397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:568-766
               
               
               Cow position:chrX:37079886-37079677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:568-766
               
               
               Cow position:chrX:39954885-39954676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:568-777
               
               
               Cow position:chrX:21255690-21255911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:568-779
               
               
               Cow position:chrX:9227331-9227105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:568-782
               
               
               Cow position:chrX:11860589-11860362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:568-782
               
               
               Cow position:chrX:35803467-35803694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:568-1039
               
               
               Cow position:chrX:32171229-32170741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:496
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 196

               
               
               Conread position:568-1109
               
               
               Cow position:chrX:31436133-31436690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:570
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 254

               
               
               Conread position:568-1112
               
               
               Cow position:chrX:44396673-44397235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:376
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):104, 255

               
               
               Conread position:568-1116
               
               
               Cow position:chrX:29048686-29049266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:583
               
               
               Alignm identity:383
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 20

               
               
               Conread position:569-692
               
               
               Cow position:chrX:23091460-23091583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:569-761
               
               
               Cow position:chrX:12640952-12641144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 98

               
               
               Conread position:570-680
               
               
               Cow position:chrX:9417098-9416985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:570-693
               
               
               Cow position:chrX:45851586-45851713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:570-772
               
               
               Cow position:chrX:21844289-21844505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:570-932
               
               
               Cow position:chrX:18999553-18999928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 139

               
               
               Conread position:571-720
               
               
               Cow position:chrX:20954260-20954412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:571-782
               
               
               Cow position:chrX:11725611-11725383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:571-782
               
               
               Cow position:chrX:24758041-24757817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:571-1023
               
               
               Cow position:chrX:47481456-47481928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:327
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:572-1117
               
               
               Cow position:chrX:31443163-31442610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:409
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 58

               
               
               Conread position:573-1116
               
               
               Cow position:chrX:40558018-40557430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:593
               
               
               Alignm identity:411
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 198

               
               
               Conread position:574-711
               
               
               Cow position:chrX:6487659-6487801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:576-779
               
               
               Cow position:chrX:33205333-33205117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:170
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:576-1035
               
               
               Cow position:chrX:43527163-43527652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 347

               
               
               Conread position:576-1148
               
               
               Cow position:chrX:15545558-15546140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:599
               
               
               Alignm identity:433
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 272

               
               
               Conread position:577-687
               
               
               Cow position:chrX:26754123-26754010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:577-693
               
               
               Cow position:chrX:2425460-2425341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:577-1127
               
               
               Cow position:chrX:34454336-34454898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:579
               
               
               Alignm identity:392
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:578-766
               
               
               Cow position:chrX:27419319-27419120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:578-780
               
               
               Cow position:chrX:36820569-36820354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:578-782
               
               
               Cow position:chrX:13196308-13196091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:578-782
               
               
               Cow position:chrX:30686933-30686713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:579-1125
               
               
               Cow position:chrX:43114836-43115386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:566
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:580-777
               
               
               Cow position:chrX:27458920-27459131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:583-782
               
               
               Cow position:chrX:23452930-23452718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:583-793
               
               
               Cow position:chrX:45421005-45420783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 13

               
               
               Conread position:583-932
               
               
               Cow position:chrX:6234766-6234410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 32

               
               
               Conread position:583-1029
               
               
               Cow position:chrX:7645926-7646394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 239

               
               
               Conread position:584-1034
               
               
               Cow position:chrX:36778074-36778541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:482
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 308

               
               
               Conread position:585-761
               
               
               Cow position:chrX:8103423-8103236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:585-777
               
               
               Cow position:chrX:30060861-30060656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:585-782
               
               
               Cow position:chrX:29083795-29084000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:586-839
               
               
               Cow position:chrX:42855082-42855359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:588-787
               
               
               Cow position:chrX:12850805-12851017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:588-1060
               
               
               Cow position:chrX:38007095-38006603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 240

               
               
               Conread position:589-782
               
               
               Cow position:chrX:15008758-15008552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:589-782
               
               
               Cow position:chrX:29356261-29356467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:589-782
               
               
               Cow position:chrX:29844802-29844596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:589-1123
               
               
               Cow position:chrX:26492676-26493243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:572
               
               
               Alignm identity:397
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 327

               
               
               Conread position:590-782
               
               
               Cow position:chrX:23215782-23215987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:590-1008
               
               
               Cow position:chrX:16783169-16783608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:286
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):72, 323

               
               
               Conread position:590-1116
               
               
               Cow position:chrX:5638493-5637951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:560
               
               
               Alignm identity:378
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 235

               
               
               Conread position:591-693
               
               
               Cow position:chrX:10348158-10348053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:593-1066
               
               
               Cow position:chrX:36311277-36311745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:487
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 164

               
               
               Conread position:595-897
               
               
               Cow position:chrX:12826427-12826753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):65, 253

               
               
               Conread position:596-1138
               
               
               Cow position:chrX:41238679-41238111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:584
               
               
               Alignm identity:402
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 16

               
               
               Conread position:597-782
               
               
               Cow position:chrX:3658372-3658174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:597-782
               
               
               Cow position:chrX:27469972-27469774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:597-874
               
               
               Cow position:chrX:9161270-9161569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:597-923
               
               
               Cow position:chrX:28157169-28157531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:262
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):66, 16

               
               
               Conread position:597-1051
               
               
               Cow position:chrX:33639650-33640135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 35

               
               
               Conread position:599-782
               
               
               Cow position:chrX:14152531-14152335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:600-763
               
               
               Cow position:chrX:616718-616547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:149
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:600-782
               
               
               Cow position:chrX:42779441-42779246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:600-787
               
               
               Cow position:chrX:43101212-43101412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:600-830
               
               
               Cow position:chrX:39704390-39704633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):67, 35

               
               
               Conread position:600-945
               
               
               Cow position:chrX:28845529-28845887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 161

               
               
               Conread position:601-686
               
               
               Cow position:chrX:5899909-5899994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:86
               
               
               Alignm identity:76
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:601-782
               
               
               Cow position:chrX:42165761-42165955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:601-881
               
               
               Cow position:chrX:19188622-19188929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:602-737
               
               
               Cow position:chrX:37129010-37129152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:602-782
               
               
               Cow position:chrX:3895289-3895096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:603-795
               
               
               Cow position:chrX:26619673-26619473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:603-819
               
               
               Cow position:chrX:20376658-20376889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:603-1112
               
               
               Cow position:chrX:7350990-7351525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:548
               
               
               Alignm identity:394
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 132

               
               
               Conread position:606-779
               
               
               Cow position:chrX:30021407-30021221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:606-884
               
               
               Cow position:chrX:23061145-23061428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 158

               
               
               Conread position:606-933
               
               
               Cow position:chrX:14924691-14925041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 129

               
               
               Conread position:607-884
               
               
               Cow position:chrX:20709767-20710067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:214
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):87, 76

               
               
               Conread position:608-767
               
               
               Cow position:chrX:45410350-45410179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:609-874
               
               
               Cow position:chrX:33466311-33466594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 223

               
               
               Conread position:609-932
               
               
               Cow position:chrX:11314084-11313740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 246

               
               
               Conread position:610-761
               
               
               Cow position:chrX:5919165-5919327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:610-1048
               
               
               Cow position:chrX:45414605-45414148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:308
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):59, 214

               
               
               Conread position:611-818
               
               
               Cow position:chrX:5047201-5046981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 131

               
               
               Conread position:615-873
               
               
               Cow position:chrX:33020186-33020467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):52, 249

               
               
               Conread position:616-1015
               
               
               Cow position:chrX:14221784-14222199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:277
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 112

               
               
               Conread position:616-1141
               
               
               Cow position:chrX:1176273-1175737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:552
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 80

               
               
               Conread position:617-928
               
               
               Cow position:chrX:19015144-19015473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 203

               
               
               Conread position:619-1004
               
               
               Cow position:chrX:754662-755077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:279
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 313

               
               
               Conread position:621-830
               
               
               Cow position:chrX:48536946-48536728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 58

               
               
               Conread position:622-932
               
               
               Cow position:chrX:25237885-25238219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 247

               
               
               Conread position:622-1112
               
               
               Cow position:chrX:22482982-22482465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:527
               
               
               Alignm identity:350
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):45, 205

               
               
               Conread position:623-809
               
               
               Cow position:chrX:37102333-37102141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:624-907
               
               
               Cow position:chrX:35041931-35042241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):71, 304

               
               
               Conread position:625-1014
               
               
               Cow position:chrX:44835106-44834674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:298
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 299

               
               
               Conread position:625-1137
               
               
               Cow position:chrX:4269357-4268821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:550
               
               
               Alignm identity:377
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 278

               
               
               Conread position:629-1014
               
               
               Cow position:chrX:48195327-48194913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):41, 411

               
               
               Conread position:629-1068
               
               
               Cow position:chrX:31294826-31294393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:629-1120
               
               
               Cow position:chrX:46033004-46032495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:521
               
               
               Alignm identity:351
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 277

               
               
               Conread position:631-757
               
               
               Cow position:chrX:42928066-42927933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:632-1001
               
               
               Cow position:chrX:2467597-2467994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:633-1126
               
               
               Cow position:chrX:16762490-16763007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:528
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 133

               
               
               Conread position:634-931
               
               
               Cow position:chrX:42874697-42875022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):33, 287

               
               
               Conread position:634-1080
               
               
               Cow position:chrX:37836308-37836770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:475
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 274

               
               
               Conread position:635-929
               
               
               Cow position:chrX:9997611-9997297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:223
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):31, 185

               
               
               Conread position:635-932
               
               
               Cow position:chrX:40647698-40648026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:249
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):30, 196

               
               
               Conread position:635-1104
               
               
               Cow position:chrX:8730799-8731310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:360
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 351

               
               
               Conread position:637-1014
               
               
               Cow position:chrX:8925428-8925822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 182

               
               
               Conread position:638-945
               
               
               Cow position:chrX:12017998-12018346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:248
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 279

               
               
               Conread position:638-1019
               
               
               Cow position:chrX:35413353-35413739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 153

               
               
               Conread position:640-884
               
               
               Cow position:chrX:7496974-7497234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):52, 25

               
               
               Conread position:640-940
               
               
               Cow position:chrX:34270141-34270449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):69, 63

               
               
               Conread position:642-793
               
               
               Cow position:chrX:5856596-5856437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:642-1004
               
               
               Cow position:chrX:37416348-37415963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 261

               
               
               Conread position:642-1123
               
               
               Cow position:chrX:40183623-40183119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:339
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):25, 249

               
               
               Conread position:643-1127
               
               
               Cow position:chrX:32020391-32019894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:515
               
               
               Alignm identity:354
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:644-1120
               
               
               Cow position:chrX:27509292-27508792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 202

               
               
               Conread position:645-1014
               
               
               Cow position:chrX:45404104-45403703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:278
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):24, 270

               
               
               Conread position:649-1053
               
               
               Cow position:chrX:17725712-17726138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 171

               
               
               Conread position:652-943
               
               
               Cow position:chrX:41198852-41199158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:655-888
               
               
               Cow position:chrX:20752007-20752253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:189
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:655-1112
               
               
               Cow position:chrX:9635439-9634968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:484
               
               
               Alignm identity:325
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 167

               
               
               Conread position:660-884
               
               
               Cow position:chrX:1728670-1728434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 159

               
               
               Conread position:660-1060
               
               
               Cow position:chrX:17631055-17630632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:283
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 160

               
               
               Conread position:660-1068
               
               
               Cow position:chrX:34663090-34662670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:661-1065
               
               
               Cow position:chrX:28878413-28878001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 112

               
               
               Conread position:661-1116
               
               
               Cow position:chrX:24366080-24365594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:661-1124
               
               
               Cow position:chrX:25816147-25815664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 186

               
               
               Conread position:662-915
               
               
               Cow position:chrX:23497913-23497644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 153

               
               
               Conread position:662-1039
               
               
               Cow position:chrX:17541714-17542108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:277
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):33, 159

               
               
               Conread position:662-1112
               
               
               Cow position:chrX:46073063-46072606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:471
               
               
               Alignm identity:316
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:663-885
               
               
               Cow position:chrX:42282186-42282423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:663-1112
               
               
               Cow position:chrX:4768502-4768951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:321
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):33, 8

               
               
               Conread position:665-813
               
               
               Cow position:chrX:45787407-45787569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:665-1106
               
               
               Cow position:chrX:20151603-20152066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:321
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):31, 300

               
               
               Conread position:665-1125
               
               
               Cow position:chrX:27432166-27431687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:666-1051
               
               
               Cow position:chrX:9416938-9416524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 5

               
               
               Conread position:668-888
               
               
               Cow position:chrX:39938761-39938525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):33, 202

               
               
               Conread position:670-1039
               
               
               Cow position:chrX:678810-678427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:670-1112
               
               
               Cow position:chrX:34313797-34314245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:302
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:671-844
               
               
               Cow position:chrX:19930416-19930606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 9

               
               
               Conread position:671-884
               
               
               Cow position:chrX:30833079-30832855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 35

               
               
               Conread position:672-923
               
               
               Cow position:chrX:44053018-44053291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:188
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:672-1012
               
               
               Cow position:chrX:21004444-21004804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:672-1088
               
               
               Cow position:chrX:21672311-21672762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 238

               
               
               Conread position:673-1113
               
               
               Cow position:chrX:11939163-11938728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:311
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):26, 154

               
               
               Conread position:674-945
               
               
               Cow position:chrX:41167202-41166908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):21, 241

               
               
               Conread position:674-1000
               
               
               Cow position:chrX:27680165-27680507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:245
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):23, 142

               
               
               Conread position:674-1142
               
               
               Cow position:chrX:42492748-42492268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 171

               
               
               Conread position:675-918
               
               
               Cow position:chrX:40116188-40116443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 142

               
               
               Conread position:675-1051
               
               
               Cow position:chrX:27772193-27771808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 61

               
               
               Conread position:675-1143
               
               
               Cow position:chrX:16541910-16541401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:337
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:676-888
               
               
               Cow position:chrX:46315611-46315379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):5, 142

               
               
               Conread position:678-879
               
               
               Cow position:chrX:877257-877044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 189

               
               
               Conread position:680-1047
               
               
               Cow position:chrX:40809458-40809849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):14, 233

               
               
               Conread position:687-839
               
               
               Cow position:chrX:18195724-18195879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:687-1123
               
               
               Cow position:chrX:32329943-32330406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:470
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:693-1148
               
               
               Cow position:chrX:3579732-3580205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 198

               
               
               Conread position:696-830
               
               
               Cow position:chrX:16324173-16324030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:696-835
               
               
               Cow position:chrX:6639916-6640069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:696-873
               
               
               Cow position:chrX:44063926-44063737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 141

               
               
               Conread position:696-874
               
               
               Cow position:chrX:45015377-45015563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:696-875
               
               
               Cow position:chrX:48684432-48684239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:696-881
               
               
               Cow position:chrX:42339145-42338955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:696-885
               
               
               Cow position:chrX:13265829-13265630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:696-887
               
               
               Cow position:chrX:2206753-2206558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 91

               
               
               Conread position:696-887
               
               
               Cow position:chrX:4750507-4750309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):69, 16

               
               
               Conread position:696-889
               
               
               Cow position:chrX:35284414-35284619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:696-895
               
               
               Cow position:chrX:47757138-47756923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:696-912
               
               
               Cow position:chrX:7513307-7513530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):69, 15

               
               
               Conread position:696-918
               
               
               Cow position:chrX:28836110-28835876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):65, 112

               
               
               Conread position:696-928
               
               
               Cow position:chrX:10123554-10123317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):18, 169

               
               
               Conread position:696-931
               
               
               Cow position:chrX:42499238-42499008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 86

               
               
               Conread position:696-937
               
               
               Cow position:chrX:40567390-40567643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 163

               
               
               Conread position:696-944
               
               
               Cow position:chrX:36961428-36961692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:696-999
               
               
               Cow position:chrX:40692947-40692643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:696-1012
               
               
               Cow position:chrX:11856220-11856551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):72, 163

               
               
               Conread position:696-1022
               
               
               Cow position:chrX:1514610-1514288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):18, 142

               
               
               Conread position:696-1022
               
               
               Cow position:chrX:37574647-37574971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:696-1023
               
               
               Cow position:chrX:39558556-39558217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 124

               
               
               Conread position:696-1029
               
               
               Cow position:chrX:17662806-17662460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:696-1031
               
               
               Cow position:chrX:37910243-37910583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:239
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 112

               
               
               Conread position:696-1034
               
               
               Cow position:chrX:11073398-11073049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 347

               
               
               Conread position:696-1041
               
               
               Cow position:chrX:23091672-23092023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:696-1048
               
               
               Cow position:chrX:6265795-6265442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:253
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):18, 66

               
               
               Conread position:696-1049
               
               
               Cow position:chrX:6690457-6690102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:696-1051
               
               
               Cow position:chrX:32623373-32623730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:242
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):18, 89

               
               
               Conread position:696-1051
               
               
               Cow position:chrX:41884627-41884252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:251
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):18, 122

               
               
               Conread position:696-1054
               
               
               Cow position:chrX:13382116-13382488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:258
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):18, 210

               
               
               Conread position:696-1054
               
               
               Cow position:chrX:27394223-27393863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 114

               
               
               Conread position:696-1071
               
               
               Cow position:chrX:47046729-47046334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):18, 208

               
               
               Conread position:696-1097
               
               
               Cow position:chrX:22821838-22822264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 129

               
               
               Conread position:696-1105
               
               
               Cow position:chrX:6488378-6488782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:288
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:696-1111
               
               
               Cow position:chrX:29602040-29601606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 15

               
               
               Conread position:696-1112
               
               
               Cow position:chrX:22074591-22075019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:696-1112
               
               
               Cow position:chrX:29542428-29542004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:299
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:696-1116
               
               
               Cow position:chrX:40035655-40035214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:303
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):9, 133

               
               
               Conread position:696-1119
               
               
               Cow position:chrX:9425951-9425531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 120

               
               
               Conread position:696-1119
               
               
               Cow position:chrX:38549239-38549678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 130

               
               
               Conread position:696-1124
               
               
               Cow position:chrX:42381309-42380875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 214

               
               
               Conread position:696-1131
               
               
               Cow position:chrX:23514227-23513761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:335
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:696-1135
               
               
               Cow position:chrX:12980040-12979589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:696-1135
               
               
               Cow position:chrX:28013649-28013192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:309
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 197

               
               
               Conread position:697-810
               
               
               Cow position:chrX:18812049-18812169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):71, 15

               
               
               Conread position:697-831
               
               
               Cow position:chrX:4942958-4942819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:697-884
               
               
               Cow position:chrX:14900930-14900735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:697-931
               
               
               Cow position:chrX:23970180-23970418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:187
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:697-932
               
               
               Cow position:chrX:9953933-9954179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 173

               
               
               Conread position:697-933
               
               
               Cow position:chrX:29509652-29509397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 212

               
               
               Conread position:697-970
               
               
               Cow position:chrX:11589801-11589509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 214

               
               
               Conread position:697-1000
               
               
               Cow position:chrX:15814889-15815192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:222
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:697-1014
               
               
               Cow position:chrX:48652936-48652599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 202

               
               
               Conread position:697-1029
               
               
               Cow position:chrX:1503130-1503465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:697-1054
               
               
               Cow position:chrX:33493566-33493940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:255
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 121

               
               
               Conread position:697-1068
               
               
               Cow position:chrX:16416300-16416679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:267
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:697-1098
               
               
               Cow position:chrX:35542683-35543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:295
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:697-1105
               
               
               Cow position:chrX:34543579-34544003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 44

               
               
               Conread position:697-1112
               
               
               Cow position:chrX:38852988-38853435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:453
               
               
               Alignm identity:303
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:697-1112
               
               
               Cow position:chrX:45598812-45598384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:697-1116
               
               
               Cow position:chrX:11633470-11633910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:697-1116
               
               
               Cow position:chrX:21663101-21663523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:302
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):68, 146

               
               
               Conread position:697-1116
               
               
               Cow position:chrX:44961539-44961983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:298
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):17, 229

               
               
               Conread position:697-1123
               
               
               Cow position:chrX:30963080-30962640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 199

               
               
               Conread position:697-1124
               
               
               Cow position:chrX:17231526-17231973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 200

               
               
               Conread position:697-1124
               
               
               Cow position:chrX:21642687-21642245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:697-1127
               
               
               Cow position:chrX:1465979-1466403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:289
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:697-1127
               
               
               Cow position:chrX:27174786-27175239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 261

               
               
               Conread position:697-1127
               
               
               Cow position:chrX:45110447-45110889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:456
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:697-1128
               
               
               Cow position:chrX:6278714-6278257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:331
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 400

               
               
               Conread position:697-1137
               
               
               Cow position:chrX:48236603-48237065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:473
               
               
               Alignm identity:309
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 209

               
               
               Conread position:697-1159
               
               
               Cow position:chrX:34411631-34412122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:342
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 121

               
               
               Conread position:698-884
               
               
               Cow position:chrX:43049137-43049343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:698-941
               
               
               Cow position:chrX:26285772-26286030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:698-946
               
               
               Cow position:chrX:26876089-26875826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):67, 115

               
               
               Conread position:698-1104
               
               
               Cow position:chrX:10831704-10831265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:698-1116
               
               
               Cow position:chrX:38935074-38935507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 144

               
               
               Conread position:698-1116
               
               
               Cow position:chrX:48010387-48010833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:297
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:698-1136
               
               
               Cow position:chrX:32420011-32420458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:458
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 193

               
               
               Conread position:698-1154
               
               
               Cow position:chrX:33000697-33001161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 115

               
               
               Conread position:699-1067
               
               
               Cow position:chrX:841952-842334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):15, 193

               
               
               Conread position:699-1123
               
               
               Cow position:chrX:9201340-9201778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:302
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:699-1124
               
               
               Cow position:chrX:16996300-16996730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:292
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 142

               
               
               Conread position:699-1124
               
               
               Cow position:chrX:46587611-46588056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 360

               
               
               Conread position:700-1029
               
               
               Cow position:chrX:29120851-29121185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:700-1099
               
               
               Cow position:chrX:36975744-36976163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 239

               
               
               Conread position:702-925
               
               
               Cow position:chrX:17908487-17908255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 110

               
               
               Conread position:702-1113
               
               
               Cow position:chrX:29545083-29544662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:301
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 193

               
               
               Conread position:703-1126
               
               
               Cow position:chrX:36355921-36356343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:294
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):84, 41

               
               
               Conread position:704-1112
               
               
               Cow position:chrX:1499468-1499878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:297
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 190

               
               
               Conread position:704-1119
               
               
               Cow position:chrX:36283144-36283571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):10, 200

               
               
               Conread position:706-1014
               
               
               Cow position:chrX:47303079-47302755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):8, 138

               
               
               Conread position:714-1035
               
               
               Cow position:chrX:31311835-31312173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 103

               
               
               Conread position:714-1063
               
               
               Cow position:chrX:3489075-3488719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:247
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):63, 69

               
               
               Conread position:714-1068
               
               
               Cow position:chrX:44657155-44656786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 221

               
               
               Conread position:716-1023
               
               
               Cow position:chrX:7161883-7162188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):112, 12

               
               
               Conread position:716-1053
               
               
               Cow position:chrX:42235722-42235361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):42, 113

               
               
               Conread position:718-860
               
               
               Cow position:chrX:31256681-31256833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):43, 94

               
               
               Conread position:720-1054
               
               
               Cow position:chrX:36067835-36068182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 99

               
               
               Conread position:722-1128
               
               
               Cow position:chrX:32820847-32821280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:305
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):46, 11

               
               
               Conread position:723-1067
               
               
               Cow position:chrX:7336645-7337018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 161

               
               
               Conread position:725-946
               
               
               Cow position:chrX:13785537-13785305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:726-1124
               
               
               Cow position:chrX:36060973-36061395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:273
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 291

               
               
               Conread position:727-1071
               
               
               Cow position:chrX:47186498-47186147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 168

               
               
               Conread position:729-1068
               
               
               Cow position:chrX:169701-169365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):108, 39

               
               
               Conread position:729-1112
               
               
               Cow position:chrX:27145447-27145823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:274
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):5, 96

               
               
               Conread position:731-1127
               
               
               Cow position:chrX:22387421-22387004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 179

               
               
               Conread position:731-1148
               
               
               Cow position:chrX:35885903-35885472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:293
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):37, 325

               
               
               Conread position:732-1127
               
               
               Cow position:chrX:6407376-6407780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:733-1116
               
               
               Cow position:chrX:34792482-34792095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 83

               
               
               Conread position:733-1119
               
               
               Cow position:chrX:37955666-37956076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:285
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):56, 86

               
               
               Conread position:733-1127
               
               
               Cow position:chrX:4398954-4399357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:734-1148
               
               
               Cow position:chrX:14955938-14955509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 18

               
               
               Conread position:742-1048
               
               
               Cow position:chrX:22454252-22453942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:742-1106
               
               
               Cow position:chrX:45875239-45875608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:251
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 47

               
               
               Conread position:744-1068
               
               
               Cow position:chrX:5680085-5679754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):94, 11

               
               
               Conread position:747-1104
               
               
               Cow position:chrX:27227966-27228345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:750-1126
               
               
               Cow position:chrX:9651165-9650794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:254
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:754-1142
               
               
               Cow position:chrX:8917251-8917653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:260
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 8

               
               
               Conread position:755-1054
               
               
               Cow position:chrX:29680404-29680099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:755-1137
               
               
               Cow position:chrX:870310-869933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:270
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):23, 5

               
               
               Conread position:765-1068
               
               
               Cow position:chrX:31252289-31252584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):72, 14

               
               
               Conread position:765-1133
               
               
               Cow position:chrX:18204598-18204220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:266
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:765-1134
               
               
               Cow position:chrX:29723606-29723998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:272
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:765-1134
               
               
               Cow position:chrX:41027022-41027408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:268
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:768-1125
               
               
               Cow position:chrX:34315398-34315764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:249
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:773-1127
               
               
               Cow position:chrX:24331655-24332016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:255
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):6, 117

               
               
               Conread position:774-1127
               
               
               Cow position:chrX:43049940-43050309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 228

               
               
               Conread position:779-995
               
               
               Cow position:chrX:27685131-27685353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:779-1035
               
               
               Cow position:chrX:5679682-5679428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):60, 117

               
               
               Conread position:779-1047
               
               
               Cow position:chrX:38728621-38728890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):58, 116

               
               
               Conread position:779-1053
               
               
               Cow position:chrX:46433370-46433652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):27, 117

               
               
               Conread position:779-1054
               
               
               Cow position:chrX:616378-616095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):58, 36

               
               
               Conread position:779-1054
               
               
               Cow position:chrX:9365791-9365513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):58, 35

               
               
               Conread position:779-1106
               
               
               Cow position:chrX:40685447-40685111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:779-1112
               
               
               Cow position:chrX:21986408-21986077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 36

               
               
               Conread position:779-1112
               
               
               Cow position:chrX:26881684-26881338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:236
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):59, 36

               
               
               Conread position:779-1113
               
               
               Cow position:chrX:36393463-36393116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 151

               
               
               Conread position:779-1126
               
               
               Cow position:chrX:4403198-4403557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:254
               
               
               Alignm E-value:7.00649e-44
               
               
               Alignm gaps (pig, cow):58, 115

               
               
               Conread position:779-1127
               
               
               Cow position:chrX:25207959-25207622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:240
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):36, 56

               
               
               Conread position:779-1137
               
               
               Cow position:chrX:18111274-18111627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:239
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:779-1137
               
               
               Cow position:chrX:40320289-40320654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:243
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):35, 103

               
               
               Conread position:782-1049
               
               
               Cow position:chrX:7710656-7710380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:782-1112
               
               
               Cow position:chrX:42927932-42927606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):55, 34

               
               
               Conread position:783-1065
               
               
               Cow position:chrX:27119587-27119862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:196
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):53, 103

               
               
               Conread position:783-1127
               
               
               Cow position:chrX:5919384-5919729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:245
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:784-1113
               
               
               Cow position:chrX:46022677-46023000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:225
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:784-1116
               
               
               Cow position:chrX:33654958-33654615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:231
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:784-1138
               
               
               Cow position:chrX:17949601-17949244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:248
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:785-1136
               
               
               Cow position:chrX:46546987-46546626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):26, 55

               
               
               Conread position:785-1157
               
               
               Cow position:chrX:34505157-34504783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):77, 30

               
               
               Conread position:791-1057
               
               
               Cow position:chrX:29937983-29938257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:793-1125
               
               
               Cow position:chrX:21327801-21328151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:796-1113
               
               
               Cow position:chrX:10516157-10516479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:229
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):66, 19

               
               
               Conread position:799-1054
               
               
               Cow position:chrX:37129172-37129432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:799-1054
               
               
               Cow position:chrX:45884071-45883808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:799-1148
               
               
               Cow position:chrX:12095870-12095507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 81

               
               
               Conread position:801-1120
               
               
               Cow position:chrX:27261093-27261422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):36, 248

               
               
               Conread position:805-1125
               
               
               Cow position:chrX:20168467-20168792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:229
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):32, 94

               
               
               Conread position:805-1128
               
               
               Cow position:chrX:29050156-29050479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:234
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):32, 127

               
               
               Conread position:806-1127
               
               
               Cow position:chrX:42855365-42855702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:236
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:807-1064
               
               
               Cow position:chrX:33205053-33204796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:807-1124
               
               
               Cow position:chrX:48071072-48071398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:808-1126
               
               
               Cow position:chrX:40680523-40680853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:230
               
               
               Alignm E-value:5.99756e-43
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:808-1143
               
               
               Cow position:chrX:22283744-22284092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):29, 172

               
               
               Conread position:812-1112
               
               
               Cow position:chrX:27075127-27074827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:813-1128
               
               
               Cow position:chrX:16575040-16575347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 85

               
               
               Conread position:814-1129
               
               
               Cow position:chrX:6559527-6559213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:816-1112
               
               
               Cow position:chrX:39220000-39220312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:818-1068
               
               
               Cow position:chrX:4515606-4515864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:827-1116
               
               
               Cow position:chrX:4109124-4109413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:834-1125
               
               
               Cow position:chrX:13146922-13147221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 45

               
               
               Conread position:834-1164
               
               
               Cow position:chrX:2675018-2674678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 43

               
               
               Conread position:839-1123
               
               
               Cow position:chrX:44339378-44339086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:840-1124
               
               
               Cow position:chrX:44090872-44091159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:184
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 37

               
               
               Conread position:844-1123
               
               
               Cow position:chrX:43152203-43151916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:844-1124
               
               
               Cow position:chrX:44660635-44660353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:844-1136
               
               
               Cow position:chrX:47013450-47013153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:847-1116
               
               
               Cow position:chrX:44202090-44201817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 60

               
               
               Conread position:847-1116
               
               
               Cow position:chrX:48532271-48532542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:847-1124
               
               
               Cow position:chrX:44859906-44859626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:847-1124
               
               
               Cow position:chrX:48198690-48198412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:847-1124
               
               
               Cow position:chrX:48570887-48570607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:847-1137
               
               
               Cow position:chrX:46793789-46793500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:197
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:847-1148
               
               
               Cow position:chrX:26205496-26205197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 39

               
               
               Conread position:847-1158
               
               
               Cow position:chrX:48473864-48474179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:852-1124
               
               
               Cow position:chrX:45254621-45254346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:852-1124
               
               
               Cow position:chrX:48397866-48397590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:852-1126
               
               
               Cow position:chrX:48574608-48574885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:852-1137
               
               
               Cow position:chrX:44736894-44736600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:852-1159
               
               
               Cow position:chrX:44591100-44590793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):83, 25

               
               
               Conread position:859-1104
               
               
               Cow position:chrX:4645943-4645698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:176
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):76, 32

               
               
               Conread position:859-1106
               
               
               Cow position:chrX:36866140-36866391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:859-1112
               
               
               Cow position:chrX:17956664-17956913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):211, 31

               
               
               Conread position:859-1127
               
               
               Cow position:chrX:24457584-24457308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):76, 18

               
               
               Conread position:859-1127
               
               
               Cow position:chrX:41941595-41941863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):76, 26

               
               
               Conread position:859-1135
               
               
               Cow position:chrX:42893886-42894172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 210

               
               
               Conread position:860-1116
               
               
               Cow position:chrX:48003817-48004074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):75, 17

               
               
               Conread position:861-1127
               
               
               Cow position:chrX:19394523-19394795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 16

               
               
               Conread position:862-1127
               
               
               Cow position:chrX:38321415-38321143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 169

               
               
               Conread position:863-1054
               
               
               Cow position:chrX:20743575-20743768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 30

               
               
               Conread position:863-1144
               
               
               Cow position:chrX:6599811-6599517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:866-1117
               
               
               Cow position:chrX:28940221-28940473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 26

               
               
               Conread position:866-1138
               
               
               Cow position:chrX:1088167-1087899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 72

               
               
               Conread position:870-1156
               
               
               Cow position:chrX:24336098-24335810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:871-1157
               
               
               Cow position:chrX:32574293-32574585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 191

               
               
               Conread position:873-1148
               
               
               Cow position:chrX:42450033-42449749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:881-1116
               
               
               Cow position:chrX:40574953-40574715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 55

               
               
               Conread position:882-1116
               
               
               Cow position:chrX:38587854-38587617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:886-1141
               
               
               Cow position:chrX:35658793-35659048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):49, 72

               
               
               Conread position:887-1127
               
               
               Cow position:chrX:7648416-7648174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:888-1135
               
               
               Cow position:chrX:42479828-42480075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:888-1158
               
               
               Cow position:chrX:27668963-27668691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:891-1105
               
               
               Cow position:chrX:42836179-42836398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):20, 142

               
               
               Conread position:891-1113
               
               
               Cow position:chrX:2935955-2936178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:891-1145
               
               
               Cow position:chrX:20957240-20957498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:891-1145
               
               
               Cow position:chrX:25049283-25049025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):44, 174

               
               
               Conread position:893-1113
               
               
               Cow position:chrX:29478724-29478947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:893-1125
               
               
               Cow position:chrX:5063251-5063473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):8, 40

               
               
               Conread position:893-1129
               
               
               Cow position:chrX:13121940-13122186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 14

               
               
               Conread position:896-1116
               
               
               Cow position:chrX:35392289-35392077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:896-1124
               
               
               Cow position:chrX:29451544-29451309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 7

               
               
               Conread position:899-1114
               
               
               Cow position:chrX:3494816-3494595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:900-1127
               
               
               Cow position:chrX:17292963-17293195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:901-1128
               
               
               Cow position:chrX:32877366-32877139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 131

               
               
               Conread position:901-1141
               
               
               Cow position:chrX:26843260-26843013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:905-1126
               
               
               Cow position:chrX:8493079-8493306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):30, 195

               
               
               Conread position:909-1067
               
               
               Cow position:chrX:39180216-39180058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):26, 86

               
               
               Conread position:909-1112
               
               
               Cow position:chrX:1122526-1122323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:909-1113
               
               
               Cow position:chrX:19761771-19761974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:909-1124
               
               
               Cow position:chrX:43008626-43008846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:909-1128
               
               
               Cow position:chrX:20583683-20583900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:909-1136
               
               
               Cow position:chrX:26979772-26979543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:909-1137
               
               
               Cow position:chrX:36313989-36313761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 145

               
               
               Conread position:909-1141
               
               
               Cow position:chrX:20345470-20345701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):161, 33

               
               
               Conread position:911-1127
               
               
               Cow position:chrX:19018812-19018589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:911-1137
               
               
               Cow position:chrX:4328164-4327932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 69

               
               
               Conread position:912-1116
               
               
               Cow position:chrX:40336931-40337139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 45

               
               
               Conread position:912-1124
               
               
               Cow position:chrX:24170709-24170489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 76

               
               
               Conread position:912-1127
               
               
               Cow position:chrX:34420754-34420974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 203

               
               
               Conread position:912-1128
               
               
               Cow position:chrX:35285193-35285414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:912-1153
               
               
               Cow position:chrX:28067870-28068112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 214

               
               
               Conread position:915-1132
               
               
               Cow position:chrX:36260706-36260928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):115, 31

               
               
               Conread position:917-1128
               
               
               Cow position:chrX:16763902-16763690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 126

               
               
               Conread position:917-1141
               
               
               Cow position:chrX:19717546-19717761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 34

               
               
               Conread position:918-1119
               
               
               Cow position:chrX:44040207-44040408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):152, 18

               
               
               Conread position:921-1124
               
               
               Cow position:chrX:46909844-46910044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 37

               
               
               Conread position:921-1126
               
               
               Cow position:chrX:17524355-17524146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:921-1129
               
               
               Cow position:chrX:2314590-2314376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:921-1134
               
               
               Cow position:chrX:34398755-34398537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:922-1130
               
               
               Cow position:chrX:37749953-37749749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 40

               
               
               Conread position:922-1138
               
               
               Cow position:chrX:4091954-4092171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):13, 149

               
               
               Conread position:927-1143
               
               
               Cow position:chrX:35681603-35681823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):143, 104

               
               
               Conread position:928-1127
               
               
               Cow position:chrX:10415215-10415013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):142, 7

               
               
               Conread position:929-1163
               
               
               Cow position:chrX:30958766-30959006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):44, 17

               
               
               Conread position:930-1116
               
               
               Cow position:chrX:44870392-44870208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):150, 20

               
               
               Conread position:936-1127
               
               
               Cow position:chrX:8642091-8642284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:936-1127
               
               
               Cow position:chrX:35409797-35409991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):134, 57

               
               
               Conread position:943-1124
               
               
               Cow position:chrX:1121315-1121130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:949-1112
               
               
               Cow position:chrX:6480538-6480371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:953-1119
               
               
               Cow position:chrX:30789469-30789298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:954-1113
               
               
               Cow position:chrX:48574294-48574129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:954-1126
               
               
               Cow position:chrX:41435486-41435305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 171

               
               
               Conread position:956-1104
               
               
               Cow position:chrX:11813138-11813290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:956-1116
               
               
               Cow position:chrX:296456-296620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:956-1116
               
               
               Cow position:chrX:4602873-4602710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):114, 15

               
               
               Conread position:956-1116
               
               
               Cow position:chrX:41215387-41215551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:956-1127
               
               
               Cow position:chrX:16770129-16770304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:956-1128
               
               
               Cow position:chrX:27459930-27460107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 168

               
               
               Conread position:958-1127
               
               
               Cow position:chrX:11589300-11589128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 99

               
               
               Conread position:959-1104
               
               
               Cow position:chrX:10237845-10237697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):108, 66

               
               
               Conread position:959-1104
               
               
               Cow position:chrX:31986506-31986356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:959-1106
               
               
               Cow position:chrX:46533237-46533086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:959-1111
               
               
               Cow position:chrX:40556391-40556240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 79

               
               
               Conread position:959-1111
               
               
               Cow position:chrX:45759739-45759892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 81

               
               
               Conread position:959-1112
               
               
               Cow position:chrX:11653838-11653991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:959-1112
               
               
               Cow position:chrX:42760320-42760477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:959-1113
               
               
               Cow position:chrX:22552911-22552754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):111, 131

               
               
               Conread position:959-1116
               
               
               Cow position:chrX:1960357-1960197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 92

               
               
               Conread position:959-1116
               
               
               Cow position:chrX:31983517-31983350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:959-1122
               
               
               Cow position:chrX:4559801-4559968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:959-1124
               
               
               Cow position:chrX:26882012-26881844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):111, 161

               
               
               Conread position:959-1125
               
               
               Cow position:chrX:8759694-8759860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 17

               
               
               Conread position:959-1125
               
               
               Cow position:chrX:23335908-23335738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:959-1125
               
               
               Cow position:chrX:37752038-37751874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):109, 72

               
               
               Conread position:959-1127
               
               
               Cow position:chrX:45044520-45044693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:959-1128
               
               
               Cow position:chrX:9451413-9451581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 47

               
               
               Conread position:959-1128
               
               
               Cow position:chrX:14925340-14925515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:959-1130
               
               
               Cow position:chrX:48558814-48558989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:959-1136
               
               
               Cow position:chrX:41010966-41011138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 66

               
               
               Conread position:959-1137
               
               
               Cow position:chrX:14135746-14135926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):110, 76

               
               
               Conread position:959-1141
               
               
               Cow position:chrX:17498390-17498578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:959-1146
               
               
               Cow position:chrX:27270443-27270627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:959-1148
               
               
               Cow position:chrX:1938082-1938272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):111, 75

               
               
               Conread position:959-1149
               
               
               Cow position:chrX:33466692-33466884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):102, 68

               
               
               Conread position:959-1152
               
               
               Cow position:chrX:44995566-44995763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:960-1113
               
               
               Cow position:chrX:28106916-28107071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):110, 86

               
               
               Conread position:960-1123
               
               
               Cow position:chrX:37867322-37867489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:960-1142
               
               
               Cow position:chrX:37867501-37867687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:961-1119
               
               
               Cow position:chrX:16801193-16801036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 18

               
               
               Conread position:961-1120
               
               
               Cow position:chrX:33678403-33678239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):54, 160

               
               
               Conread position:961-1127
               
               
               Cow position:chrX:32215298-32215468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:961-1128
               
               
               Cow position:chrX:51831-51664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):109, 73

               
               
               Conread position:961-1158
               
               
               Cow position:chrX:47100527-47100319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:962-1112
               
               
               Cow position:chrX:8326975-8327129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:963-1126
               
               
               Cow position:chrX:34194009-34193842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:966-1135
               
               
               Cow position:chrX:42506874-42506699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:966-1157
               
               
               Cow position:chrX:13923939-13924132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):104, 74

               
               
               Conread position:967-1124
               
               
               Cow position:chrX:11670762-11670923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:969-1129
               
               
               Cow position:chrX:37717800-37717966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):101, 10

               
               
               Conread position:971-1149
               
               
               Cow position:chrX:35509599-35509419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):99, 70

               
               
               Conread position:974-1127
               
               
               Cow position:chrX:19356546-19356703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:977-1120
               
               
               Cow position:chrX:876761-876616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):91, 141

               
               
               Conread position:979-1135
               
               
               Cow position:chrX:1996364-1996204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:984-1112
               
               
               Cow position:chrX:10479842-10479974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:987-1124
               
               
               Cow position:chrX:597383-597242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:987-1128
               
               
               Cow position:chrX:42159037-42159183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:990-1113
               
               
               Cow position:chrX:13347367-13347494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:993-1143
               
               
               Cow position:chrX:41194007-41194159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:1006-1136
               
               
               Cow position:chrX:23185223-23185089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1007-1133
               
               
               Cow position:chrX:19162015-19161885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):63, 0
Show alignments to all cow chromosomes.
Conread position:	262-782
Cow position:	chrX:28556088-28555555 (view UCSC Genome Browser custom track)
Alignm length:	535
Alignm identity:	247
Alignm E-value:	0
Alignm gaps (pig, cow):	283, 291
Conread position:	297-613
Cow position:	chrX:21459221-21458907 (view UCSC Genome Browser custom track)
Alignm length:	319
Alignm identity:	235
Alignm E-value:	0
Alignm gaps (pig, cow):	47, 27
Conread position:	301-478
Cow position:	chrX:44206346-44206525 (view UCSC Genome Browser custom track)
Alignm length:	182
Alignm identity:	136
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	11, 82
Conread position:	302-541
Cow position:	chrX:32194711-32194458 (view UCSC Genome Browser custom track)
Alignm length:	254
Alignm identity:	176
Alignm E-value:	4e-28
Alignm gaps (pig, cow):	10, 0
Conread position:	304-515
Cow position:	chrX:32584545-32584329 (view UCSC Genome Browser custom track)
Alignm length:	217
Alignm identity:	159
Alignm E-value:	8e-35
Alignm gaps (pig, cow):	8, 0
Conread position:	304-777
Cow position:	chrX:24441853-24441372 (view UCSC Genome Browser custom track)
Alignm length:	494
Alignm identity:	351
Alignm E-value:	0
Alignm gaps (pig, cow):	8, 104
Conread position:	304-785
Cow position:	chrX:9898955-9898459 (view UCSC Genome Browser custom track)
Alignm length:	500
Alignm identity:	365
Alignm E-value:	0
Alignm gaps (pig, cow):	8, 215
Conread position:	304-786
Cow position:	chrX:18244368-18244870 (view UCSC Genome Browser custom track)
Alignm length:	503
Alignm identity:	371
Alignm E-value:	0
Alignm gaps (pig, cow):	8, 0
Conread position:	305-780
Cow position:	chrX:18950349-18949867 (view UCSC Genome Browser custom track)
Alignm length:	493
Alignm identity:	360
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 79
Conread position:	305-782
Cow position:	chrX:9153747-9154240 (view UCSC Genome Browser custom track)
Alignm length:	495
Alignm identity:	365
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 250
Conread position:	306-527
Cow position:	chrX:29722607-29722824 (view UCSC Genome Browser custom track)
Alignm length:	222
Alignm identity:	170
Alignm E-value:	5.99756e-43
Alignm gaps (pig, cow):	74, 0
Conread position:	307-659
Cow position:	chrX:32329416-32329765 (view UCSC Genome Browser custom track)
Alignm length:	353
Alignm identity:	236
Alignm E-value:	0
Alignm gaps (pig, cow):	135, 0
Conread position:	309-1116
Cow position:	chrX:40827352-40826522 (view UCSC Genome Browser custom track)
Alignm length:	841
Alignm identity:	584
Alignm E-value:	0
Alignm gaps (pig, cow):	23, 76
Conread position:	311-693
Cow position:	chrX:23382791-23382391 (view UCSC Genome Browser custom track)
Alignm length:	401
Alignm identity:	249
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	44, 0
Conread position:	311-734
Cow position:	chrX:3628169-3628600 (view UCSC Genome Browser custom track)
Alignm length:	443
Alignm identity:	279
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	22, 71
Conread position:	311-771
Cow position:	chrX:23280403-23280873 (view UCSC Genome Browser custom track)
Alignm length:	472
Alignm identity:	353
Alignm E-value:	0
Alignm gaps (pig, cow):	356, 256
Conread position:	311-780
Cow position:	chrX:2664405-2664887 (view UCSC Genome Browser custom track)
Alignm length:	484
Alignm identity:	329
Alignm E-value:	0
Alignm gaps (pig, cow):	234, 241
Conread position:	312-663
Cow position:	chrX:9911376-9911019 (view UCSC Genome Browser custom track)
Alignm length:	360
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	240, 36
Conread position:	319-761
Cow position:	chrX:24826739-24827183 (view UCSC Genome Browser custom track)
Alignm length:	451
Alignm identity:	333
Alignm E-value:	0
Alignm gaps (pig, cow):	156, 5
Conread position:	319-780
Cow position:	chrX:15780985-15781459 (view UCSC Genome Browser custom track)
Alignm length:	476
Alignm identity:	325
Alignm E-value:	0
Alignm gaps (pig, cow):	226, 233