Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B04.5 |
| Conread position: | 226-645 |
| Cow position: | chr17:22472297-22472710 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 72, 63 |
| Conread position: | 650-939 |
| Cow position: | chr17:22473231-22473517 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 657-927 |
| Cow position: | chr17:22451976-22451706 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-936 |
| Cow position: | chr17:22551943-22551664 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-938 |
| Cow position: | chr17:22499326-22499045 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-938 |
| Cow position: | chr17:22552195-22551914 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 81 |
| Conread position: | 657-938 |
| Cow position: | chr17:22552279-22551998 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 143, 150 |
| Conread position: | 657-938 |
| Cow position: | chr17:22552447-22552166 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 90, 74 |
| Conread position: | 657-938 |
| Cow position: | chr17:22552867-22552586 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 77, 81 |
| Conread position: | 657-938 |
| Cow position: | chr17:22553035-22552754 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 657-938 |
| Cow position: | chr17:22589865-22589584 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 145, 151 |
| Conread position: | 657-939 |
| Cow position: | chr17:22452144-22451862 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 57, 50 |
| Conread position: | 657-940 |
| Cow position: | chr17:22473319-22473602 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 81, 68 |
| Conread position: | 657-940 |
| Cow position: | chr17:22473571-22473854 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr17:22499074-22498791 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr17:22551775-22551492 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 143, 150 |
| Conread position: | 657-940 |
| Cow position: | chr17:22551859-22551576 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr17:22552027-22551744 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr17:22589697-22589414 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr17:22589949-22589666 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-942 |
| Cow position: | chr17:22473655-22473940 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 269, 283 |
| Conread position: | 657-945 |
| Cow position: | chr17:22499158-22498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-946 |
| Cow position: | chr17:22452312-22452023 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 66, 47 |
| Conread position: | 657-948 |
| Cow position: | chr17:22498822-22498531 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 73, 58 |
| Conread position: | 658-940 |
| Cow position: | chr17:22589612-22589330 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 222, 234 |
| Conread position: | 658-945 |
| Cow position: | chr17:22473488-22473775 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-936 |
| Cow position: | chr17:22590283-22590006 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 232, 224 |
| Conread position: | 659-938 |
| Cow position: | chr17:22552697-22552418 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 79, 74 |
| Conread position: | 659-940 |
| Cow position: | chr17:22473405-22473686 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-940 |
| Cow position: | chr17:22553117-22552836 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 142, 148 |
| Conread position: | 659-940 |
| Cow position: | chr17:22590199-22589918 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-945 |
| Cow position: | chr17:22452058-22451772 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 74, 79 |
| Conread position: | 661-939 |
| Cow position: | chr17:22552527-22552249 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 161, 156 |
| Conread position: | 664-940 |
| Cow position: | chr17:22452389-22452113 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 219, 239 |
| Conread position: | 670-936 |
| Cow position: | chr17:22498977-22498711 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-933 |
| Cow position: | chr17:22589515-22589253 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-940 |
| Cow position: | chr17:22499228-22498959 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-940 |
| Cow position: | chr17:22552097-22551828 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 130, 136 |
| Conread position: | 671-940 |
| Cow position: | chr17:22552349-22552080 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 67, 62 |
| Conread position: | 671-940 |
| Cow position: | chr17:22552769-22552500 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-940 |
| Cow position: | chr17:22589767-22589498 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-940 |
| Cow position: | chr17:22590019-22589750 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 677-938 |
| Cow position: | chr17:22552595-22552334 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 684-945 |
| Cow position: | chr17:22498879-22498618 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 124, 115 |
| Conread position: | 704-940 |
| Cow position: | chr17:22590070-22589834 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 739-940 |
| Cow position: | chr17:22452397-22452197 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 743-939 |
| Cow position: | chr17:22499324-22499128 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 744-946 |
| Cow position: | chr17:22499409-22499205 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 745-945 |
| Cow position: | chr17:22473242-22473439 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.