Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B04.5 |
| Conread position: | 633-937 |
| Cow position: | chr23:25626074-25626378 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 162, 172 |
| Conread position: | 648-940 |
| Cow position: | chr23:24639695-24639987 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 656-936 |
| Cow position: | chr23:24535894-24535614 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 656-939 |
| Cow position: | chr23:24547179-24546896 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-834 |
| Cow position: | chr23:24546842-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-880 |
| Cow position: | chr23:24546926-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-881 |
| Cow position: | chr23:24522416-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 150, 143 |
| Conread position: | 657-920 |
| Cow position: | chr23:25698588-25698325 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 134, 145 |
| Conread position: | 657-931 |
| Cow position: | chr23:24560402-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-932 |
| Cow position: | chr23:25660471-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 657-935 |
| Cow position: | chr23:24639788-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-936 |
| Cow position: | chr23:24535809-24535530 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 143, 147 |
| Conread position: | 657-936 |
| Cow position: | chr23:24560654-24560375 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 657-936 |
| Cow position: | chr23:25626014-25626293 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-936 |
| Cow position: | chr23:25626599-25626878 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 67 |
| Conread position: | 657-937 |
| Cow position: | chr23:25660219-25660499 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-937 |
| Cow position: | chr23:25660303-25660583 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-939 |
| Cow position: | chr23:24547262-24546980 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr23:24522500-24522217 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 58 |
| Conread position: | 657-940 |
| Cow position: | chr23:24547094-24546811 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr23:24626376-24626659 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-945 |
| Cow position: | chr23:24560486-24560198 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 143, 150 |
| Conread position: | 657-946 |
| Cow position: | chr23:24560570-24560281 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-946 |
| Cow position: | chr23:24626460-24626747 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 147, 143 |
| Conread position: | 658-935 |
| Cow position: | chr23:24535976-24535699 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 142, 150 |
| Conread position: | 658-936 |
| Cow position: | chr23:25724058-25723780 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 80, 75 |
| Conread position: | 658-943 |
| Cow position: | chr23:24654102-24654387 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-945 |
| Cow position: | chr23:24560821-24560534 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 142, 150 |
| Conread position: | 660-946 |
| Cow position: | chr23:25626686-25626972 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 670-940 |
| Cow position: | chr23:24626305-24626575 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 53, 46 |
| Conread position: | 670-940 |
| Cow position: | chr23:25660148-25660418 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 671-939 |
| Cow position: | chr23:24639634-24639902 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 144, 150 |
| Conread position: | 671-939 |
| Cow position: | chr23:25626196-25626464 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 672-936 |
| Cow position: | chr23:25626365-25626626 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 672-938 |
| Cow position: | chr23:24536046-24535780 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 672-940 |
| Cow position: | chr23:24522569-24522301 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 128, 150 |
| Conread position: | 673-936 |
| Cow position: | chr23:24639383-24639647 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 52 |
| Conread position: | 673-939 |
| Cow position: | chr23:24560722-24560456 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 127, 131 |
| Conread position: | 673-940 |
| Cow position: | chr23:24639552-24639819 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 50 |
| Conread position: | 677-939 |
| Cow position: | chr23:25660407-25660669 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 123, 127 |
| Conread position: | 684-878 |
| Cow position: | chr23:24521967-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 40 |
| Conread position: | 684-940 |
| Cow position: | chr23:24654044-24654300 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 684-946 |
| Cow position: | chr23:24522722-24522463 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 689-881 |
| Cow position: | chr23:25698304-25698112 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 118, 111 |
| Conread position: | 689-933 |
| Cow position: | chr23:24639232-24639476 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 110, 115 |
| Conread position: | 704-939 |
| Cow position: | chr23:25724097-25723861 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 725-940 |
| Cow position: | chr23:24626276-24626491 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 728-940 |
| Cow position: | chr23:24522597-24522385 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 72, 77 |
| Conread position: | 728-940 |
| Cow position: | chr23:25626586-25626798 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 71, 76 |
| Conread position: | 728-945 |
| Cow position: | chr23:24547275-24547058 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 77, 73 |
| Conread position: | 757-938 |
| Cow position: | chr23:24547330-24547149 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 47 |
Show alignments to all cow chromosomes.