Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B04.5 |
| Conread position: | 657-927 |
| Cow position: | chr25:33127953-33128223 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-932 |
| Cow position: | chr25:326990-327265 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 65, 58 |
| Conread position: | 657-936 |
| Cow position: | chr25:33157406-33157127 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 228, 238 |
| Conread position: | 657-936 |
| Cow position: | chr25:33298630-33298909 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 141, 150 |
| Conread position: | 657-938 |
| Cow position: | chr25:34769973-34769692 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 59, 66 |
| Conread position: | 657-939 |
| Cow position: | chr25:33298798-33299080 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 141, 150 |
| Conread position: | 657-939 |
| Cow position: | chr25:34447257-34447539 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 657-940 |
| Cow position: | chr25:33157154-33156871 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr25:33298966-33299249 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr25:34769637-34769354 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-940 |
| Cow position: | chr25:36801034-36801317 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 76 |
| Conread position: | 657-945 |
| Cow position: | chr25:23420450-23420738 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 75, 60 |
| Conread position: | 657-945 |
| Cow position: | chr25:33157070-33156783 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 271, 0 |
| Conread position: | 657-945 |
| Cow position: | chr25:33157322-33157034 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 228, 238 |
| Conread position: | 657-945 |
| Cow position: | chr25:33157490-33157202 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-945 |
| Cow position: | chr25:33298882-33299170 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 657-945 |
| Cow position: | chr25:36800950-36801238 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 227, 235 |
| Conread position: | 657-946 |
| Cow position: | chr25:34770057-34769768 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-936 |
| Cow position: | chr25:36800867-36801145 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 658-945 |
| Cow position: | chr25:33299387-33299674 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 65, 57 |
| Conread position: | 658-948 |
| Cow position: | chr25:23420535-23420825 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-899 |
| Cow position: | chr25:23420620-23420860 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-936 |
| Cow position: | chr25:34769803-34769526 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-939 |
| Cow position: | chr25:33299304-33299584 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 140, 148 |
| Conread position: | 659-939 |
| Cow position: | chr25:34447091-34447371 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 659-940 |
| Cow position: | chr25:33299136-33299417 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 659-940 |
| Cow position: | chr25:33299472-33299753 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 58 |
| Conread position: | 659-945 |
| Cow position: | chr25:36801528-36801814 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 76, 58 |
| Conread position: | 660-939 |
| Cow position: | chr25:34433510-34433786 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 256, 95 |
| Conread position: | 661-939 |
| Cow position: | chr25:36801362-36801640 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 137, 146 |
| Conread position: | 661-940 |
| Cow position: | chr25:33298550-33298829 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 139, 149 |
| Conread position: | 664-936 |
| Cow position: | chr25:34446928-34447200 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 26 |
| Conread position: | 664-940 |
| Cow position: | chr25:34769882-34769606 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 665-936 |
| Cow position: | chr25:34769713-34769442 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 665-940 |
| Cow position: | chr25:33298470-33298745 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 97, 89 |
| Conread position: | 670-940 |
| Cow position: | chr25:33127798-33128068 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 670-948 |
| Cow position: | chr25:34769540-34769262 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 68, 63 |
| Conread position: | 671-880 |
| Cow position: | chr25:33145179-33145388 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-920 |
| Cow position: | chr25:33299568-33299817 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 671-920 |
| Cow position: | chr25:36801708-36801957 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 671-936 |
| Cow position: | chr25:33298728-33298993 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 671-936 |
| Cow position: | chr25:34447439-34447704 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 54 |
| Conread position: | 671-937 |
| Cow position: | chr25:33127883-33128149 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 45, 49 |
| Conread position: | 671-940 |
| Cow position: | chr25:23420380-23420649 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 671-940 |
| Cow position: | chr25:33157224-33156955 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-945 |
| Cow position: | chr25:33299064-33299338 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 671-945 |
| Cow position: | chr25:33299232-33299506 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 671-945 |
| Cow position: | chr25:36801624-36801898 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 675-940 |
| Cow position: | chr25:33305879-33305620 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 675-945 |
| Cow position: | chr25:36800632-36800902 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 684-878 |
| Cow position: | chr25:34433030-34433224 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 30, 39 |
| Conread position: | 687-935 |
| Cow position: | chr25:366738-366986 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 212, 218 |
| Conread position: | 688-945 |
| Cow position: | chr25:33127732-33127989 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 689-937 |
| Cow position: | chr25:33145113-33145361 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 111, 119 |
| Conread position: | 689-938 |
| Cow position: | chr25:34447205-34447454 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 689-939 |
| Cow position: | chr25:34770109-34769859 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 689-940 |
| Cow position: | chr25:34447037-34447288 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 691-929 |
| Cow position: | chr25:33305947-33305713 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 704-945 |
| Cow position: | chr25:23420329-23420570 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 738-939 |
| Cow position: | chr25:34770146-34769943 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 743-940 |
| Cow position: | chr25:34433005-34433202 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 44, 61 |
Show alignments to all cow chromosomes.