Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 341-521 |
| Cow position: | chr1:98023706-98023526 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 129, 89 |
| Conread position: | 345-474 |
| Cow position: | chr1:50344970-50345096 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 348-637 |
| Cow position: | chr1:95765392-95765086 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 122, 8 |
| Conread position: | 351-541 |
| Cow position: | chr1:6958578-6958770 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 143, 78 |
| Conread position: | 351-552 |
| Cow position: | chr1:74084489-74084294 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 172, 5 |
| Conread position: | 353-579 |
| Cow position: | chr1:34685896-34686119 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 141, 67 |
| Conread position: | 356-579 |
| Cow position: | chr1:57264282-57264067 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 183, 73 |
| Conread position: | 357-559 |
| Cow position: | chr1:57635172-57635372 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 183, 72 |
| Conread position: | 358-528 |
| Cow position: | chr1:15956444-15956617 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 91 |
| Conread position: | 364-555 |
| Cow position: | chr1:63905762-63905565 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 364-586 |
| Cow position: | chr1:75833961-75833737 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 366-886 |
| Cow position: | chr1:15367235-15366699 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 66 |
| Conread position: | 367-702 |
| Cow position: | chr1:86020352-86020001 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 183 |
| Conread position: | 368-706 |
| Cow position: | chr1:52774805-52774441 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 99, 61 |
| Conread position: | 371-890 |
| Cow position: | chr1:12884845-12884329 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 354 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 104, 57 |
| Conread position: | 372-542 |
| Cow position: | chr1:32244679-32244508 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 372-595 |
| Cow position: | chr1:66357073-66356852 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 156, 57 |
| Conread position: | 372-890 |
| Cow position: | chr1:78069752-78069232 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 48 |
| Conread position: | 374-595 |
| Cow position: | chr1:20214542-20214312 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 38, 58 |
| Conread position: | 376-552 |
| Cow position: | chr1:5162329-5162149 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 95, 55 |
| Conread position: | 376-619 |
| Cow position: | chr1:70534210-70533957 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 108, 54 |
| Conread position: | 376-819 |
| Cow position: | chr1:24241277-24240813 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 312 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 377-667 |
| Cow position: | chr1:29379950-29379649 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 63 |
| Conread position: | 378-541 |
| Cow position: | chr1:68818070-68817907 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 123, 56 |
| Conread position: | 378-556 |
| Cow position: | chr1:45535428-45535613 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 379-888 |
| Cow position: | chr1:72790912-72791442 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 49 |
| Conread position: | 380-525 |
| Cow position: | chr1:76170011-76170155 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 114, 44 |
| Conread position: | 380-706 |
| Cow position: | chr1:65144733-65144404 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 380-862 |
| Cow position: | chr1:59165916-59165401 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 253 |
| Conread position: | 383-559 |
| Cow position: | chr1:25856422-25856592 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 85, 22 |
| Conread position: | 383-887 |
| Cow position: | chr1:42505634-42505141 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 44 |
| Conread position: | 385-595 |
| Cow position: | chr1:39718745-39718962 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 70, 172 |
| Conread position: | 386-545 |
| Cow position: | chr1:23577644-23577477 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 387-555 |
| Cow position: | chr1:55146536-55146709 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 388-621 |
| Cow position: | chr1:99690891-99691116 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 79, 113 |
| Conread position: | 388-829 |
| Cow position: | chr1:50272847-50272374 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 32 |
| Conread position: | 389-642 |
| Cow position: | chr1:86614603-86614861 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 389-833 |
| Cow position: | chr1:23931842-23931371 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 322 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 80, 40 |
| Conread position: | 390-586 |
| Cow position: | chr1:31399488-31399283 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 390-865 |
| Cow position: | chr1:13133093-13132591 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 390-890 |
| Cow position: | chr1:31274567-31274051 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 89 |
| Conread position: | 391-764 |
| Cow position: | chr1:41093131-41092739 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 391-886 |
| Cow position: | chr1:57743259-57742755 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 392-550 |
| Cow position: | chr1:57698716-57698549 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 32, 77 |
| Conread position: | 392-890 |
| Cow position: | chr1:42316279-42315802 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 38 |
| Conread position: | 394-559 |
| Cow position: | chr1:3076649-3076486 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 143, 34 |
| Conread position: | 394-559 |
| Cow position: | chr1:59557464-59557632 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 394-633 |
| Cow position: | chr1:67406388-67406632 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 128, 26 |
| Conread position: | 394-826 |
| Cow position: | chr1:60086347-60086788 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 76, 102 |
| Conread position: | 394-898 |
| Cow position: | chr1:55682242-55681763 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 396-865 |
| Cow position: | chr1:58195098-58194646 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 34 |
| Conread position: | 396-870 |
| Cow position: | chr1:99319244-99319721 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 312 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 396-885 |
| Cow position: | chr1:37306509-37306032 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 346 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 75, 38 |
| Conread position: | 396-894 |
| Cow position: | chr1:72998331-72998853 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 396-894 |
| Cow position: | chr1:99857975-99858498 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 364 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 64, 35 |
| Conread position: | 397-645 |
| Cow position: | chr1:14649224-14648971 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 400-550 |
| Cow position: | chr1:43285461-43285305 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 94 |
| Conread position: | 400-661 |
| Cow position: | chr1:52036694-52036430 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 400-832 |
| Cow position: | chr1:34325268-34324840 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 400-894 |
| Cow position: | chr1:44376695-44377202 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 69, 34 |
| Conread position: | 404-551 |
| Cow position: | chr1:78791555-78791404 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 66, 90 |
| Conread position: | 404-706 |
| Cow position: | chr1:52819069-52819387 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 404-743 |
| Cow position: | chr1:10038814-10039162 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 71, 25 |
| Conread position: | 404-839 |
| Cow position: | chr1:11984767-11984311 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 309 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 404-896 |
| Cow position: | chr1:6321961-6322486 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 405-885 |
| Cow position: | chr1:37432066-37432562 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 406-762 |
| Cow position: | chr1:88648207-88647840 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 406-858 |
| Cow position: | chr1:68521323-68521785 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 302 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 69, 24 |
| Conread position: | 406-869 |
| Cow position: | chr1:29605994-29605523 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 406-894 |
| Cow position: | chr1:4278621-4279092 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 407-579 |
| Cow position: | chr1:71119266-71119445 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 72, 24 |
| Conread position: | 407-633 |
| Cow position: | chr1:32955009-32954778 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 407-819 |
| Cow position: | chr1:64609220-64608806 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 407-889 |
| Cow position: | chr1:66655289-66655786 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 344 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 408-862 |
| Cow position: | chr1:33538086-33538534 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 306 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 408-890 |
| Cow position: | chr1:17478093-17478559 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 313 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 113, 23 |
| Conread position: | 409-756 |
| Cow position: | chr1:7375962-7376305 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 410-900 |
| Cow position: | chr1:58882252-58881731 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 412-890 |
| Cow position: | chr1:18484682-18484200 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 340 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 415-607 |
| Cow position: | chr1:25886312-25886106 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 417-885 |
| Cow position: | chr1:20078113-20077660 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 425-559 |
| Cow position: | chr1:29648633-29648493 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 431-897 |
| Cow position: | chr1:81925041-81924554 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 330 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 96, 19 |
| Conread position: | 432-890 |
| Cow position: | chr1:24222082-24222534 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 104 |
| Conread position: | 474-819 |
| Cow position: | chr1:21932892-21932537 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 474-846 |
| Cow position: | chr1:55050176-55050568 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 6, 24 |
| Conread position: | 474-886 |
| Cow position: | chr1:22774506-22774092 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 6, 50 |
| Conread position: | 478-869 |
| Cow position: | chr1:1743464-1743051 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 90 |
| Conread position: | 479-884 |
| Cow position: | chr1:91059317-91059730 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 508-886 |
| Cow position: | chr1:68809683-68809319 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 129, 25 |
| Conread position: | 544-869 |
| Cow position: | chr1:65073822-65073484 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 554-890 |
| Cow position: | chr1:46398093-46398433 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 43, 60 |
| Conread position: | 557-917 |
| Cow position: | chr1:41732180-41731790 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 288 |
| Conread position: | 589-890 |
| Cow position: | chr1:43218138-43218439 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 590-894 |
| Cow position: | chr1:39560090-39559781 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 608-890 |
| Cow position: | chr1:52085490-52085211 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 41, 223 |
| Conread position: | 612-887 |
| Cow position: | chr1:39628034-39627750 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 26, 140 |
| Conread position: | 613-886 |
| Cow position: | chr1:53703778-53703498 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 615-885 |
| Cow position: | chr1:84778135-84778409 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 615-914 |
| Cow position: | chr1:45858739-45859049 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 648-894 |
| Cow position: | chr1:11424995-11424733 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 28, 184 |
| Conread position: | 671-829 |
| Cow position: | chr1:32607731-32607894 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 671-869 |
| Cow position: | chr1:10684608-10684810 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 156 |
| Conread position: | 671-869 |
| Cow position: | chr1:49961858-49961663 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 88, 59 |
| Conread position: | 671-887 |
| Cow position: | chr1:6717382-6717163 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 158 |
| Conread position: | 671-887 |
| Cow position: | chr1:13245731-13245521 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 671-890 |
| Cow position: | chr1:40646828-40647049 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 155 |
| Conread position: | 671-890 |
| Cow position: | chr1:52066219-52066420 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 671-895 |
| Cow position: | chr1:52241704-52241939 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 671-900 |
| Cow position: | chr1:25835464-25835696 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 672-849 |
| Cow position: | chr1:81370641-81370821 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 80, 64 |
| Conread position: | 674-890 |
| Cow position: | chr1:47023795-47023588 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 676-892 |
| Cow position: | chr1:71146909-71146690 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 143 |
| Conread position: | 677-885 |
| Cow position: | chr1:42970450-42970663 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 81, 51 |
| Conread position: | 679-887 |
| Cow position: | chr1:85867150-85867358 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 51, 109 |
| Conread position: | 679-896 |
| Cow position: | chr1:53755058-53755274 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 680-844 |
| Cow position: | chr1:75833713-75833551 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 682-894 |
| Cow position: | chr1:64973936-64974158 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 48, 14 |
| Conread position: | 684-887 |
| Cow position: | chr1:97538072-97538284 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 151 |
| Conread position: | 688-895 |
| Cow position: | chr1:67519971-67519760 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 689-886 |
| Cow position: | chr1:62301611-62301411 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 137 |
| Conread position: | 689-894 |
| Cow position: | chr1:16299407-16299621 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 36, 138 |
| Conread position: | 691-890 |
| Cow position: | chr1:22440329-22440529 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 697-844 |
| Cow position: | chr1:63624999-63624854 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 699-893 |
| Cow position: | chr1:25014685-25014882 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 31, 127 |
| Conread position: | 713-865 |
| Cow position: | chr1:91043345-91043501 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 713-888 |
| Cow position: | chr1:6456105-6455925 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 110 |
| Conread position: | 725-894 |
| Cow position: | chr1:31806315-31806492 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 32, 80 |
| Conread position: | 732-861 |
| Cow position: | chr1:99470670-99470541 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 733-851 |
| Cow position: | chr1:57977621-57977503 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 90 |
| Conread position: | 737-890 |
| Cow position: | chr1:74094764-74094604 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 91 |
| Conread position: | 756-894 |
| Cow position: | chr1:99415064-99414927 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 59 |
| Conread position: | 766-892 |
| Cow position: | chr1:5122135-5122260 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.