Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 346-542 |
| Cow position: | chr12:21922085-21922284 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 358-440 |
| Cow position: | chr12:8523948-8524029 (view UCSC Genome Browser custom track) |
| Alignm length: | 83 |
| Alignm identity: | 75 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 360-542 |
| Cow position: | chr12:25619714-25619529 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 124, 69 |
| Conread position: | 362-542 |
| Cow position: | chr12:17708380-17708568 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 368-551 |
| Cow position: | chr12:37270573-37270757 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 126, 65 |
| Conread position: | 372-550 |
| Cow position: | chr12:12939255-12939069 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 98, 57 |
| Conread position: | 378-894 |
| Cow position: | chr12:27437977-27437441 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 382-764 |
| Cow position: | chr12:4518512-4518096 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 384-570 |
| Cow position: | chr12:10028579-10028774 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 170 |
| Conread position: | 388-552 |
| Cow position: | chr12:24032697-24032865 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 139, 43 |
| Conread position: | 388-579 |
| Cow position: | chr12:18769385-18769189 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 141 |
| Conread position: | 392-545 |
| Cow position: | chr12:15034274-15034120 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 87 |
| Conread position: | 393-556 |
| Cow position: | chr12:18421230-18421060 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 36 |
| Conread position: | 395-555 |
| Cow position: | chr12:27717876-27718034 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 400-660 |
| Cow position: | chr12:24020426-24020702 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 400-726 |
| Cow position: | chr12:25549435-25549777 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 71, 150 |
| Conread position: | 404-586 |
| Cow position: | chr12:48437197-48437007 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 404-869 |
| Cow position: | chr12:20795614-20796074 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 325 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 404-890 |
| Cow position: | chr12:8909470-8908959 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 431-903 |
| Cow position: | chr12:36303891-36304379 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 344 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 474-890 |
| Cow position: | chr12:42466624-42467022 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 6, 41 |
| Conread position: | 557-865 |
| Cow position: | chr12:10202405-10202098 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 602-894 |
| Cow position: | chr12:31805757-31806043 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 613-884 |
| Cow position: | chr12:10798642-10798360 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 29, 204 |
| Conread position: | 613-887 |
| Cow position: | chr12:14691185-14690926 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 613-894 |
| Cow position: | chr12:11352580-11352279 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 16, 228 |
| Conread position: | 614-869 |
| Cow position: | chr12:9746477-9746733 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 614-926 |
| Cow position: | chr12:10607419-10607743 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 217 |
| Conread position: | 670-890 |
| Cow position: | chr12:39338101-39338321 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 84, 156 |
| Conread position: | 671-821 |
| Cow position: | chr12:36249809-36249647 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 671-869 |
| Cow position: | chr12:4348026-4347822 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 158 |
| Conread position: | 672-890 |
| Cow position: | chr12:27093672-27093460 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 675-893 |
| Cow position: | chr12:15033995-15033772 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 677-880 |
| Cow position: | chr12:5819620-5819410 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 163 |
| Conread position: | 679-887 |
| Cow position: | chr12:9450298-9450088 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 108 |
| Conread position: | 690-886 |
| Cow position: | chr12:34133406-34133207 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 699-889 |
| Cow position: | chr12:13575278-13575469 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 718-885 |
| Cow position: | chr12:4734001-4734173 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 733-887 |
| Cow position: | chr12:7089158-7089000 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 96 |
Show alignments to all cow chromosomes.