Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 345-564 |
| Cow position: | chr14:14187688-14187470 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 156, 56 |
| Conread position: | 348-580 |
| Cow position: | chr14:5630509-5630280 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 48 |
| Conread position: | 356-513 |
| Cow position: | chr14:27104440-27104280 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 74 |
| Conread position: | 356-574 |
| Cow position: | chr14:26108987-26108758 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 358-527 |
| Cow position: | chr14:36080349-36080517 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 358-549 |
| Cow position: | chr14:23107670-23107478 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 72 |
| Conread position: | 358-551 |
| Cow position: | chr14:12559140-12559339 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 48, 74 |
| Conread position: | 358-579 |
| Cow position: | chr14:36709466-36709239 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 361-574 |
| Cow position: | chr14:12856935-12856720 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 43 |
| Conread position: | 364-552 |
| Cow position: | chr14:33209021-33209208 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 137, 66 |
| Conread position: | 364-559 |
| Cow position: | chr14:43032142-43031947 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 112, 66 |
| Conread position: | 366-549 |
| Cow position: | chr14:3588117-3588295 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 104, 62 |
| Conread position: | 370-606 |
| Cow position: | chr14:45292589-45292842 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 61 |
| Conread position: | 372-544 |
| Cow position: | chr14:19957581-19957756 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 118, 58 |
| Conread position: | 374-556 |
| Cow position: | chr14:44878458-44878646 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 50 |
| Conread position: | 374-557 |
| Cow position: | chr14:8488512-8488324 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 55 |
| Conread position: | 376-886 |
| Cow position: | chr14:5642060-5642568 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 342 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 138, 56 |
| Conread position: | 377-552 |
| Cow position: | chr14:28605501-28605322 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 377-894 |
| Cow position: | chr14:9921377-9920834 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 365 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 384-606 |
| Cow position: | chr14:44253212-44252987 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 117, 45 |
| Conread position: | 384-821 |
| Cow position: | chr14:5385801-5385364 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 86, 36 |
| Conread position: | 386-585 |
| Cow position: | chr14:6789685-6789484 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 386-706 |
| Cow position: | chr14:31399892-31399555 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 84, 227 |
| Conread position: | 387-547 |
| Cow position: | chr14:15033071-15032911 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 114, 98 |
| Conread position: | 390-585 |
| Cow position: | chr14:40721620-40721818 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 77, 25 |
| Conread position: | 390-886 |
| Cow position: | chr14:21380509-21380003 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 351 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 136, 40 |
| Conread position: | 391-552 |
| Cow position: | chr14:39821477-39821311 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 80, 38 |
| Conread position: | 392-559 |
| Cow position: | chr14:28378674-28378506 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 39 |
| Conread position: | 392-576 |
| Cow position: | chr14:37156178-37155991 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 131, 39 |
| Conread position: | 392-642 |
| Cow position: | chr14:13997408-13997653 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 131, 89 |
| Conread position: | 392-663 |
| Cow position: | chr14:46855240-46855525 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 392-842 |
| Cow position: | chr14:20518010-20517567 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 393-560 |
| Cow position: | chr14:25763503-25763676 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 396-886 |
| Cow position: | chr14:18323387-18323894 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 344 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 398-579 |
| Cow position: | chr14:41211161-41210973 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 173 |
| Conread position: | 398-691 |
| Cow position: | chr14:27883463-27883744 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 398-805 |
| Cow position: | chr14:15918187-15918612 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 285 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 73, 153 |
| Conread position: | 400-605 |
| Cow position: | chr14:39616607-39616815 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 152 |
| Conread position: | 400-890 |
| Cow position: | chr14:33680682-33681191 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 401-595 |
| Cow position: | chr14:39807158-39807368 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 401-766 |
| Cow position: | chr14:3033633-3034005 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 66, 27 |
| Conread position: | 404-548 |
| Cow position: | chr14:19979727-19979878 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 64, 27 |
| Conread position: | 404-624 |
| Cow position: | chr14:13283338-13283565 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 404-674 |
| Cow position: | chr14:45583902-45584185 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 98 |
| Conread position: | 404-887 |
| Cow position: | chr14:7599920-7600389 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 405-703 |
| Cow position: | chr14:35360496-35360194 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 406-721 |
| Cow position: | chr14:24438442-24438109 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 262 |
| Conread position: | 407-578 |
| Cow position: | chr14:25362642-25362467 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 408-633 |
| Cow position: | chr14:11565171-11565396 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 408-818 |
| Cow position: | chr14:23916133-23915710 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 5, 176 |
| Conread position: | 409-887 |
| Cow position: | chr14:23164295-23164770 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 22 |
| Conread position: | 410-631 |
| Cow position: | chr14:31758969-31758733 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 221 |
| Conread position: | 415-561 |
| Cow position: | chr14:39877321-39877470 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 56, 105 |
| Conread position: | 417-762 |
| Cow position: | chr14:26410785-26410407 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 441-869 |
| Cow position: | chr14:20940484-20940042 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 458-890 |
| Cow position: | chr14:35434637-35435064 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 296 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 75, 90 |
| Conread position: | 474-740 |
| Cow position: | chr14:20708614-20708906 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 6, 89 |
| Conread position: | 482-890 |
| Cow position: | chr14:38639965-38639573 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 544-886 |
| Cow position: | chr14:20642832-20643182 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 10 |
| Conread position: | 593-864 |
| Cow position: | chr14:38224891-38224615 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 603-869 |
| Cow position: | chr14:15239045-15239324 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 35, 116 |
| Conread position: | 604-865 |
| Cow position: | chr14:8257342-8257607 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 13 |
| Conread position: | 614-890 |
| Cow position: | chr14:19542322-19542604 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 218 |
| Conread position: | 670-859 |
| Cow position: | chr14:48937540-48937349 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 58 |
| Conread position: | 671-855 |
| Cow position: | chr14:22855055-22855252 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 59, 165 |
| Conread position: | 671-887 |
| Cow position: | chr14:25952568-25952773 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 6 |
| Conread position: | 671-890 |
| Cow position: | chr14:28574911-28574695 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 128 |
| Conread position: | 671-890 |
| Cow position: | chr14:35734963-35735190 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 57, 191 |
| Conread position: | 672-865 |
| Cow position: | chr14:25346461-25346272 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 58, 78 |
| Conread position: | 674-869 |
| Cow position: | chr14:44204970-44205173 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 677-885 |
| Cow position: | chr14:43484728-43484520 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 70 |
| Conread position: | 677-886 |
| Cow position: | chr14:43380358-43380148 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 151 |
| Conread position: | 677-897 |
| Cow position: | chr14:43693796-43694021 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 56, 150 |
| Conread position: | 679-851 |
| Cow position: | chr14:43844723-43844896 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 35 |
| Conread position: | 681-862 |
| Cow position: | chr14:50015310-50015126 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 145 |
| Conread position: | 685-902 |
| Cow position: | chr14:46855568-46855784 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 691-889 |
| Cow position: | chr14:22000127-21999925 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 112 |
| Conread position: | 695-917 |
| Cow position: | chr14:18030479-18030701 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 37, 118 |
| Conread position: | 697-842 |
| Cow position: | chr14:40956618-40956771 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 697-865 |
| Cow position: | chr14:38240520-38240355 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 5, 110 |
| Conread position: | 756-890 |
| Cow position: | chr14:29112804-29112934 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 34, 67 |
Show alignments to all cow chromosomes.