Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 345-570 |
| Cow position: | chr15:23767862-23768088 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 182, 85 |
| Conread position: | 345-887 |
| Cow position: | chr15:31176025-31176582 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 351-593 |
| Cow position: | chr15:45678174-45678417 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 189 |
| Conread position: | 357-552 |
| Cow position: | chr15:4535298-4535105 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 144, 73 |
| Conread position: | 358-555 |
| Cow position: | chr15:2210956-2210763 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 82 |
| Conread position: | 358-584 |
| Cow position: | chr15:6491199-6491432 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 112, 72 |
| Conread position: | 359-916 |
| Cow position: | chr15:3539011-3539584 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 50 |
| Conread position: | 362-583 |
| Cow position: | chr15:8230193-8230413 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 8, 118 |
| Conread position: | 364-556 |
| Cow position: | chr15:17100332-17100523 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 366-543 |
| Cow position: | chr15:32287376-32287555 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 113, 63 |
| Conread position: | 366-556 |
| Cow position: | chr15:38883537-38883339 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 368-638 |
| Cow position: | chr15:21801791-21802065 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 102, 37 |
| Conread position: | 370-499 |
| Cow position: | chr15:286836-286707 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 117, 60 |
| Conread position: | 372-525 |
| Cow position: | chr15:19813026-19812870 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 372-579 |
| Cow position: | chr15:11658190-11658402 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 99, 27 |
| Conread position: | 372-821 |
| Cow position: | chr15:19214400-19213927 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 108, 62 |
| Conread position: | 374-494 |
| Cow position: | chr15:49279828-49279706 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 57 |
| Conread position: | 374-792 |
| Cow position: | chr15:26754739-26755157 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 298 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 150, 57 |
| Conread position: | 376-887 |
| Cow position: | chr15:8103155-8103667 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 55 |
| Conread position: | 378-886 |
| Cow position: | chr15:13691020-13691556 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 56 |
| Conread position: | 379-554 |
| Cow position: | chr15:48487001-48486823 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 382-886 |
| Cow position: | chr15:32325678-32325173 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 351 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 189, 25 |
| Conread position: | 384-585 |
| Cow position: | chr15:26734974-26734773 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 384-890 |
| Cow position: | chr15:5443051-5443549 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 337 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 84, 33 |
| Conread position: | 386-555 |
| Cow position: | chr15:12316286-12316115 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 386-559 |
| Cow position: | chr15:30820473-30820645 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 386-561 |
| Cow position: | chr15:34255386-34255564 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 386-579 |
| Cow position: | chr15:20486855-20487047 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 140, 44 |
| Conread position: | 388-614 |
| Cow position: | chr15:37985201-37985431 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 82, 41 |
| Conread position: | 390-675 |
| Cow position: | chr15:34176104-34176406 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 80, 41 |
| Conread position: | 392-579 |
| Cow position: | chr15:14505783-14505592 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 396-583 |
| Cow position: | chr15:24976839-24977029 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 72, 35 |
| Conread position: | 396-616 |
| Cow position: | chr15:44643955-44644167 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 71, 19 |
| Conread position: | 398-556 |
| Cow position: | chr15:14871097-14870930 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 398-885 |
| Cow position: | chr15:11675290-11675808 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 353 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 400-542 |
| Cow position: | chr15:50059214-50059363 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 400-550 |
| Cow position: | chr15:21180537-21180694 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 400-595 |
| Cow position: | chr15:22713482-22713693 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 400-622 |
| Cow position: | chr15:22160927-22160694 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 33 |
| Conread position: | 400-705 |
| Cow position: | chr15:23054602-23054277 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 400-721 |
| Cow position: | chr15:27965944-27965617 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 400-887 |
| Cow position: | chr15:8463681-8463178 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 404-595 |
| Cow position: | chr15:38818063-38818259 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 404-851 |
| Cow position: | chr15:42116740-42116294 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 299 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 71, 52 |
| Conread position: | 404-890 |
| Cow position: | chr15:3582328-3581815 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 364 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 404-891 |
| Cow position: | chr15:21298665-21299154 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 318 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 405-821 |
| Cow position: | chr15:41008122-41008550 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 276 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 179 |
| Conread position: | 406-887 |
| Cow position: | chr15:49302345-49301875 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 407-586 |
| Cow position: | chr15:25110824-25111003 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 407-868 |
| Cow position: | chr15:40991252-40991718 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 408-834 |
| Cow position: | chr15:15865832-15866250 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 415-827 |
| Cow position: | chr15:20612695-20613106 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 280 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 428-886 |
| Cow position: | chr15:9785774-9786241 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 320 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 39, 108 |
| Conread position: | 428-886 |
| Cow position: | chr15:29032770-29033243 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 99, 6 |
| Conread position: | 474-893 |
| Cow position: | chr15:28259679-28259252 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 475-868 |
| Cow position: | chr15:43233294-43232892 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 5, 18 |
| Conread position: | 522-894 |
| Cow position: | chr15:8062174-8062575 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 46, 25 |
| Conread position: | 597-890 |
| Cow position: | chr15:3593517-3593213 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 601-899 |
| Cow position: | chr15:38818291-38818598 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 218 |
| Conread position: | 607-893 |
| Cow position: | chr15:1233722-1233427 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 231 |
| Conread position: | 607-893 |
| Cow position: | chr15:1241072-1240777 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 231 |
| Conread position: | 609-890 |
| Cow position: | chr15:16456017-16455720 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 610-904 |
| Cow position: | chr15:19404709-19404396 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 27, 226 |
| Conread position: | 614-897 |
| Cow position: | chr15:45678752-45679035 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 131 |
| Conread position: | 671-851 |
| Cow position: | chr15:12300738-12300555 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 671-890 |
| Cow position: | chr15:18834549-18834764 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 671-894 |
| Cow position: | chr15:30822546-30822773 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 88, 57 |
| Conread position: | 673-869 |
| Cow position: | chr15:38634944-38634742 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 46, 156 |
| Conread position: | 673-890 |
| Cow position: | chr15:34085486-34085690 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 674-829 |
| Cow position: | chr15:6084858-6085016 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 54, 34 |
| Conread position: | 675-887 |
| Cow position: | chr15:51047189-51046982 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 82, 21 |
| Conread position: | 675-890 |
| Cow position: | chr15:19127040-19127257 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 677-923 |
| Cow position: | chr15:23753536-23753783 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 150 |
| Conread position: | 680-890 |
| Cow position: | chr15:42847690-42847490 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 681-861 |
| Cow position: | chr15:22431343-22431166 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 682-890 |
| Cow position: | chr15:15285622-15285411 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 147 |
| Conread position: | 693-847 |
| Cow position: | chr15:8442216-8442055 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 697-886 |
| Cow position: | chr15:41068963-41069145 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 33, 103 |
| Conread position: | 714-865 |
| Cow position: | chr15:15786720-15786566 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 37 |
Show alignments to all cow chromosomes.