Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 356-554 |
| Cow position: | chr16:8367128-8366924 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 356-894 |
| Cow position: | chr16:15443338-15443907 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 358-559 |
| Cow position: | chr16:30572912-30572700 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 89, 72 |
| Conread position: | 358-560 |
| Cow position: | chr16:46434417-46434218 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 131, 73 |
| Conread position: | 358-851 |
| Cow position: | chr16:1019252-1019737 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 178 |
| Conread position: | 362-545 |
| Cow position: | chr16:42177154-42177340 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 109, 31 |
| Conread position: | 363-890 |
| Cow position: | chr16:25937561-25938095 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 366-471 |
| Cow position: | chr16:3820907-3821012 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 81, 64 |
| Conread position: | 366-881 |
| Cow position: | chr16:51997053-51996525 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 99, 58 |
| Conread position: | 368-557 |
| Cow position: | chr16:23681081-23681272 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 158, 62 |
| Conread position: | 368-585 |
| Cow position: | chr16:40731947-40732160 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 130, 62 |
| Conread position: | 368-842 |
| Cow position: | chr16:50519452-50519910 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 102, 5 |
| Conread position: | 370-535 |
| Cow position: | chr16:48145688-48145528 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 97, 62 |
| Conread position: | 370-550 |
| Cow position: | chr16:14242086-14242267 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 157, 115 |
| Conread position: | 374-510 |
| Cow position: | chr16:11523211-11523078 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 374-723 |
| Cow position: | chr16:21091094-21091447 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 246 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 101, 60 |
| Conread position: | 375-595 |
| Cow position: | chr16:28695582-28695365 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 378-559 |
| Cow position: | chr16:23025065-23025245 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 37 |
| Conread position: | 378-595 |
| Cow position: | chr16:50872451-50872233 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 93, 50 |
| Conread position: | 380-543 |
| Cow position: | chr16:18426906-18427072 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 380-647 |
| Cow position: | chr16:18939730-18939992 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 87, 51 |
| Conread position: | 380-762 |
| Cow position: | chr16:22107866-22107486 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 14 |
| Conread position: | 384-559 |
| Cow position: | chr16:7665357-7665537 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 385-887 |
| Cow position: | chr16:11641161-11641659 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 332 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 386-647 |
| Cow position: | chr16:25606829-25607095 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 91 |
| Conread position: | 386-842 |
| Cow position: | chr16:49473948-49474392 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 388-852 |
| Cow position: | chr16:40271798-40272262 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 42 |
| Conread position: | 392-549 |
| Cow position: | chr16:34210680-34210519 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 392-552 |
| Cow position: | chr16:29766077-29766232 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 392-579 |
| Cow position: | chr16:52586270-52586079 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 392-886 |
| Cow position: | chr16:47341749-47341248 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 392-890 |
| Cow position: | chr16:5911014-5911511 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 392-890 |
| Cow position: | chr16:17003473-17003994 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 394-890 |
| Cow position: | chr16:54294747-54295245 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 350 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 30, 138 |
| Conread position: | 396-706 |
| Cow position: | chr16:5477610-5477276 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 398-580 |
| Cow position: | chr16:39616483-39616666 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 30 |
| Conread position: | 398-607 |
| Cow position: | chr16:50417949-50417723 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 399-890 |
| Cow position: | chr16:10776348-10775860 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 400-559 |
| Cow position: | chr16:47780812-47780977 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 404-617 |
| Cow position: | chr16:45157695-45157479 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 404-641 |
| Cow position: | chr16:28854967-28854741 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 404-912 |
| Cow position: | chr16:9948536-9949060 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 406-890 |
| Cow position: | chr16:38178477-38178999 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 207 |
| Conread position: | 406-914 |
| Cow position: | chr16:11751709-11752260 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 408-889 |
| Cow position: | chr16:44667338-44666872 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 427-890 |
| Cow position: | chr16:46029684-46030159 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 38 |
| Conread position: | 436-869 |
| Cow position: | chr16:44188501-44188056 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 293 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 39, 116 |
| Conread position: | 473-890 |
| Cow position: | chr16:48283170-48283582 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 7, 60 |
| Conread position: | 509-897 |
| Cow position: | chr16:24875247-24874837 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 284 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 511-864 |
| Cow position: | chr16:2428645-2428294 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 165 |
| Conread position: | 526-862 |
| Cow position: | chr16:20406206-20405851 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 251 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 527-894 |
| Cow position: | chr16:9988103-9987707 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 543-865 |
| Cow position: | chr16:15093372-15093030 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 300 |
| Conread position: | 544-863 |
| Cow position: | chr16:21168087-21168415 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 572-869 |
| Cow position: | chr16:32585974-32585664 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 16, 193 |
| Conread position: | 591-821 |
| Cow position: | chr16:17432791-17432562 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 139, 53 |
| Conread position: | 598-865 |
| Cow position: | chr16:41667893-41667622 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 600-890 |
| Cow position: | chr16:5594162-5594464 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 73, 26 |
| Conread position: | 612-804 |
| Cow position: | chr16:52177223-52177423 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 38 |
| Conread position: | 615-869 |
| Cow position: | chr16:7553486-7553728 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 152, 33 |
| Conread position: | 616-889 |
| Cow position: | chr16:14364917-14364638 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 45, 7 |
| Conread position: | 617-890 |
| Cow position: | chr16:16163422-16163158 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 627-890 |
| Cow position: | chr16:28466964-28466697 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 45, 184 |
| Conread position: | 670-860 |
| Cow position: | chr16:45087662-45087857 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 58, 145 |
| Conread position: | 671-819 |
| Cow position: | chr16:21028676-21028518 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 671-869 |
| Cow position: | chr16:1084405-1084214 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 100 |
| Conread position: | 671-886 |
| Cow position: | chr16:19342957-19342742 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 671-890 |
| Cow position: | chr16:6204985-6204766 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 671-890 |
| Cow position: | chr16:11295490-11295709 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 67 |
| Conread position: | 671-890 |
| Cow position: | chr16:14325338-14325563 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 62, 161 |
| Conread position: | 671-890 |
| Cow position: | chr16:28767523-28767736 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 132 |
| Conread position: | 671-894 |
| Cow position: | chr16:42732863-42732640 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 57, 144 |
| Conread position: | 672-894 |
| Cow position: | chr16:12450907-12450680 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 674-835 |
| Cow position: | chr16:20539529-20539702 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 674-850 |
| Cow position: | chr16:13553237-13553056 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 59, 150 |
| Conread position: | 674-850 |
| Cow position: | chr16:52529391-52529569 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 83, 60 |
| Conread position: | 674-894 |
| Cow position: | chr16:28850276-28850056 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 680-890 |
| Cow position: | chr16:13831572-13831358 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 50, 140 |
| Conread position: | 681-890 |
| Cow position: | chr16:27075524-27075734 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 146 |
| Conread position: | 688-882 |
| Cow position: | chr16:45684674-45684873 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 142 |
| Conread position: | 691-887 |
| Cow position: | chr16:42708374-42708171 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 142 |
| Conread position: | 696-869 |
| Cow position: | chr16:27339721-27339898 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 131 |
| Conread position: | 734-976 |
| Cow position: | chr16:11438731-11438988 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 57 |
Show alignments to all cow chromosomes.