Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 351-552 |
| Cow position: | chr17:9777984-9778183 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 159, 79 |
| Conread position: | 351-556 |
| Cow position: | chr17:24787287-24787076 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 357-579 |
| Cow position: | chr17:15333972-15333749 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 358-851 |
| Cow position: | chr17:10321632-10321125 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 113, 59 |
| Conread position: | 360-542 |
| Cow position: | chr17:14088585-14088396 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 107, 64 |
| Conread position: | 363-577 |
| Cow position: | chr17:24608594-24608813 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 89 |
| Conread position: | 365-645 |
| Cow position: | chr17:30413783-30414069 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 368-547 |
| Cow position: | chr17:23680734-23680914 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 369-566 |
| Cow position: | chr17:12220187-12219985 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 98, 61 |
| Conread position: | 373-556 |
| Cow position: | chr17:32554268-32554081 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 55 |
| Conread position: | 374-540 |
| Cow position: | chr17:6843931-6844102 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 70, 56 |
| Conread position: | 374-547 |
| Cow position: | chr17:30999532-30999706 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 105, 56 |
| Conread position: | 374-556 |
| Cow position: | chr17:6624008-6624201 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 35, 158 |
| Conread position: | 374-560 |
| Cow position: | chr17:5745487-5745306 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 120, 58 |
| Conread position: | 374-586 |
| Cow position: | chr17:13989418-13989197 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 93, 56 |
| Conread position: | 376-518 |
| Cow position: | chr17:24293926-24294069 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 92, 53 |
| Conread position: | 378-555 |
| Cow position: | chr17:21313041-21312869 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 41 |
| Conread position: | 378-740 |
| Cow position: | chr17:20154028-20154395 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 151 |
| Conread position: | 380-542 |
| Cow position: | chr17:17452840-17452676 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 88, 50 |
| Conread position: | 380-544 |
| Cow position: | chr17:17405900-17406067 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 97, 50 |
| Conread position: | 380-579 |
| Cow position: | chr17:8690678-8690478 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 381-547 |
| Cow position: | chr17:34316945-34316773 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 98, 51 |
| Conread position: | 382-594 |
| Cow position: | chr17:8214687-8214908 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 382-709 |
| Cow position: | chr17:32407333-32407018 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 47 |
| Conread position: | 384-525 |
| Cow position: | chr17:9869231-9869093 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 384-560 |
| Cow position: | chr17:23205801-23205982 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 388-544 |
| Cow position: | chr17:25707725-25707888 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 389-706 |
| Cow position: | chr17:24818024-24818351 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 41 |
| Conread position: | 392-762 |
| Cow position: | chr17:40391885-40391497 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 270 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 392-887 |
| Cow position: | chr17:21642845-21642364 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 33, 154 |
| Conread position: | 393-555 |
| Cow position: | chr17:3095600-3095769 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 38 |
| Conread position: | 394-595 |
| Cow position: | chr17:34017192-34016992 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 395-609 |
| Cow position: | chr17:8230394-8230631 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 396-744 |
| Cow position: | chr17:31427570-31427930 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 396-869 |
| Cow position: | chr17:13236948-13236475 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 304 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 396-907 |
| Cow position: | chr17:34563685-34564199 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 398-803 |
| Cow position: | chr17:3139630-3140072 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 70, 95 |
| Conread position: | 404-565 |
| Cow position: | chr17:18592225-18592394 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 163 |
| Conread position: | 404-624 |
| Cow position: | chr17:9753577-9753801 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 404-791 |
| Cow position: | chr17:159175-159548 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 404-887 |
| Cow position: | chr17:23723671-23724143 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 407-770 |
| Cow position: | chr17:31854810-31855179 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 409-827 |
| Cow position: | chr17:17483418-17483853 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 278 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 430-890 |
| Cow position: | chr17:24336964-24337450 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 326 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 331 |
| Conread position: | 474-869 |
| Cow position: | chr17:13671527-13671109 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 502-894 |
| Cow position: | chr17:5248333-5248747 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 279 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 25, 343 |
| Conread position: | 597-886 |
| Cow position: | chr17:10831196-10830897 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 602-894 |
| Cow position: | chr17:14303715-14303405 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 48, 235 |
| Conread position: | 603-835 |
| Cow position: | chr17:5226532-5226284 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 607-880 |
| Cow position: | chr17:14009334-14009055 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 42, 33 |
| Conread position: | 620-894 |
| Cow position: | chr17:35038514-35038801 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 631-890 |
| Cow position: | chr17:9348662-9348932 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 18, 206 |
| Conread position: | 671-865 |
| Cow position: | chr17:485455-485654 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 135 |
| Conread position: | 671-886 |
| Cow position: | chr17:38835576-38835785 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 671-890 |
| Cow position: | chr17:7683985-7684201 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 88, 37 |
| Conread position: | 671-897 |
| Cow position: | chr17:5156094-5155858 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 673-897 |
| Cow position: | chr17:226166-226395 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 86, 11 |
| Conread position: | 674-886 |
| Cow position: | chr17:27940188-27939966 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 160 |
| Conread position: | 675-869 |
| Cow position: | chr17:12179381-12179180 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 52, 154 |
| Conread position: | 695-921 |
| Cow position: | chr17:30147490-30147263 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 696-887 |
| Cow position: | chr17:28800286-28800081 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 718-836 |
| Cow position: | chr17:36785579-36785463 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 729-865 |
| Cow position: | chr17:30788491-30788629 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 98 |
| Conread position: | 763-894 |
| Cow position: | chr17:18409738-18409610 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.