Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 354-570 |
| Cow position: | chr18:31626344-31626568 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 117, 77 |
| Conread position: | 356-547 |
| Cow position: | chr18:47868120-47868318 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 124, 75 |
| Conread position: | 356-550 |
| Cow position: | chr18:20127437-20127241 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 115, 73 |
| Conread position: | 356-569 |
| Cow position: | chr18:36265118-36264906 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 114, 73 |
| Conread position: | 358-542 |
| Cow position: | chr18:20271353-20271166 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 110, 72 |
| Conread position: | 358-547 |
| Cow position: | chr18:47931193-47931005 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 165, 66 |
| Conread position: | 358-552 |
| Cow position: | chr18:42060743-42060941 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 358-556 |
| Cow position: | chr18:11166646-11166849 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 143, 72 |
| Conread position: | 358-579 |
| Cow position: | chr18:36477865-36478089 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 110, 73 |
| Conread position: | 364-579 |
| Cow position: | chr18:11680393-11680614 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 110, 66 |
| Conread position: | 366-560 |
| Cow position: | chr18:4578794-4578592 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 112, 64 |
| Conread position: | 367-620 |
| Cow position: | chr18:16258544-16258801 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 160, 64 |
| Conread position: | 368-511 |
| Cow position: | chr18:2295126-2294981 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 65 |
| Conread position: | 372-542 |
| Cow position: | chr18:29043664-29043493 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 372-550 |
| Cow position: | chr18:33157502-33157681 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 372-580 |
| Cow position: | chr18:25647568-25647361 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 148, 57 |
| Conread position: | 372-868 |
| Cow position: | chr18:45576927-45576417 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 76 |
| Conread position: | 378-552 |
| Cow position: | chr18:5646937-5647110 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 148, 52 |
| Conread position: | 378-579 |
| Cow position: | chr18:11368076-11367870 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 92, 52 |
| Conread position: | 379-869 |
| Cow position: | chr18:36160992-36160482 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 327 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 380-595 |
| Cow position: | chr18:51211871-51212100 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 382-545 |
| Cow position: | chr18:42747287-42747450 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 145, 47 |
| Conread position: | 387-604 |
| Cow position: | chr18:23619328-23619552 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 42 |
| Conread position: | 388-559 |
| Cow position: | chr18:52868893-52869067 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 392-553 |
| Cow position: | chr18:49660339-49660177 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 78 |
| Conread position: | 392-557 |
| Cow position: | chr18:39279297-39279123 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 40 |
| Conread position: | 394-585 |
| Cow position: | chr18:34052284-34052085 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 394-837 |
| Cow position: | chr18:44048598-44049024 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 35 |
| Conread position: | 398-559 |
| Cow position: | chr18:32860355-32860516 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 398-776 |
| Cow position: | chr18:10103321-10103700 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 251 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 69, 33 |
| Conread position: | 398-890 |
| Cow position: | chr18:39739987-39740494 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 37 |
| Conread position: | 399-559 |
| Cow position: | chr18:19123883-19124048 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 404-894 |
| Cow position: | chr18:1070100-1069587 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 407-837 |
| Cow position: | chr18:37493088-37493524 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 304 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 407-894 |
| Cow position: | chr18:290645-290130 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 24 |
| Conread position: | 415-890 |
| Cow position: | chr18:17228243-17227725 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 355 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 425-594 |
| Cow position: | chr18:36187799-36187624 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 55, 134 |
| Conread position: | 428-706 |
| Cow position: | chr18:54031442-54031752 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 460-886 |
| Cow position: | chr18:10059177-10059611 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 305 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 522-781 |
| Cow position: | chr18:14429793-14430057 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 66, 21 |
| Conread position: | 557-815 |
| Cow position: | chr18:36346046-36345786 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 557-849 |
| Cow position: | chr18:27523016-27522723 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 107 |
| Conread position: | 557-886 |
| Cow position: | chr18:18863036-18863370 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 172 |
| Conread position: | 570-860 |
| Cow position: | chr18:24503068-24503363 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 603-872 |
| Cow position: | chr18:17009320-17009601 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 232 |
| Conread position: | 613-804 |
| Cow position: | chr18:23302777-23302574 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 613-890 |
| Cow position: | chr18:29043195-29042919 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 670-890 |
| Cow position: | chr18:28665923-28666143 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 76, 21 |
| Conread position: | 671-887 |
| Cow position: | chr18:21013189-21012977 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 59, 107 |
| Conread position: | 671-897 |
| Cow position: | chr18:23826945-23826722 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 671-900 |
| Cow position: | chr18:56010245-56010478 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 673-894 |
| Cow position: | chr18:38671933-38672160 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 55 |
| Conread position: | 674-869 |
| Cow position: | chr18:32228609-32228419 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 689-885 |
| Cow position: | chr18:21388194-21388385 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 693-890 |
| Cow position: | chr18:20223024-20222823 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 714-890 |
| Cow position: | chr18:8626345-8626169 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 715-894 |
| Cow position: | chr18:35464585-35464770 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 719-876 |
| Cow position: | chr18:18557203-18557045 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 729-898 |
| Cow position: | chr18:4779068-4779236 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 32, 97 |
Show alignments to all cow chromosomes.