Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 346-894 |
| Cow position: | chr19:14104122-14104670 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 371 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 93 |
| Conread position: | 352-545 |
| Cow position: | chr19:35142332-35142139 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 356-743 |
| Cow position: | chr19:3119274-3119681 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 280 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 358-527 |
| Cow position: | chr19:34986133-34986301 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 110, 70 |
| Conread position: | 358-552 |
| Cow position: | chr19:19924908-19924717 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 112, 72 |
| Conread position: | 362-463 |
| Cow position: | chr19:37110239-37110139 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 366-632 |
| Cow position: | chr19:23399057-23398798 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 122, 63 |
| Conread position: | 372-552 |
| Cow position: | chr19:5648949-5648769 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 372-579 |
| Cow position: | chr19:36059634-36059846 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 374-551 |
| Cow position: | chr19:21285381-21285194 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 97, 57 |
| Conread position: | 374-579 |
| Cow position: | chr19:19661746-19661957 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 96, 56 |
| Conread position: | 375-833 |
| Cow position: | chr19:39602239-39601769 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 57 |
| Conread position: | 376-555 |
| Cow position: | chr19:19715068-19715250 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 377-924 |
| Cow position: | chr19:5552180-5551613 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 139 |
| Conread position: | 378-562 |
| Cow position: | chr19:27612459-27612274 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 123, 51 |
| Conread position: | 380-558 |
| Cow position: | chr19:41023939-41024111 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 151, 50 |
| Conread position: | 380-595 |
| Cow position: | chr19:2260416-2260189 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 382-887 |
| Cow position: | chr19:10112529-10113044 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 152 |
| Conread position: | 384-560 |
| Cow position: | chr19:36602091-36602269 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 87, 45 |
| Conread position: | 385-552 |
| Cow position: | chr19:37654534-37654707 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 385-628 |
| Cow position: | chr19:46454566-46454819 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 39 |
| Conread position: | 386-585 |
| Cow position: | chr19:42706640-42706436 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 85, 116 |
| Conread position: | 387-544 |
| Cow position: | chr19:35982845-35983009 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 389-545 |
| Cow position: | chr19:20433059-20432899 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 85, 42 |
| Conread position: | 389-627 |
| Cow position: | chr19:47558081-47558316 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 236, 150 |
| Conread position: | 390-578 |
| Cow position: | chr19:35741877-35742071 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 175 |
| Conread position: | 390-633 |
| Cow position: | chr19:43066902-43067148 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 77, 40 |
| Conread position: | 390-887 |
| Cow position: | chr19:22423267-22422770 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 349 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 391-571 |
| Cow position: | chr19:21115028-21115212 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 392-629 |
| Cow position: | chr19:42465766-42465525 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 393-555 |
| Cow position: | chr19:32457365-32457533 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 394-675 |
| Cow position: | chr19:31396166-31395861 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 394-894 |
| Cow position: | chr19:12375314-12374793 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 37 |
| Conread position: | 396-585 |
| Cow position: | chr19:25048876-25048691 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 396-890 |
| Cow position: | chr19:23908410-23907915 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 338 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 71, 17 |
| Conread position: | 397-566 |
| Cow position: | chr19:33823044-33823217 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 97, 34 |
| Conread position: | 399-861 |
| Cow position: | chr19:56312547-56313036 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 333 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 404-579 |
| Cow position: | chr19:22765351-22765532 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 404-623 |
| Cow position: | chr19:11615963-11615743 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 404-708 |
| Cow position: | chr19:39751215-39751537 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 76, 27 |
| Conread position: | 404-742 |
| Cow position: | chr19:18621641-18621990 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 404-815 |
| Cow position: | chr19:32187070-32187514 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 404-887 |
| Cow position: | chr19:42163206-42162732 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 338 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 516-904 |
| Cow position: | chr19:21023164-21023552 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 540-887 |
| Cow position: | chr19:48218184-48217825 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 614-890 |
| Cow position: | chr19:15244660-15244382 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 166 |
| Conread position: | 614-890 |
| Cow position: | chr19:15494559-15494283 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 24, 65 |
| Conread position: | 651-847 |
| Cow position: | chr19:41181265-41181078 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 664-885 |
| Cow position: | chr19:9005720-9005502 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 120 |
| Conread position: | 671-862 |
| Cow position: | chr19:41830131-41829942 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 671-897 |
| Cow position: | chr19:19458778-19458549 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 671-899 |
| Cow position: | chr19:39199143-39199382 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 59, 158 |
| Conread position: | 673-865 |
| Cow position: | chr19:6328889-6329080 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 675-829 |
| Cow position: | chr19:7338245-7338394 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 675-870 |
| Cow position: | chr19:24770279-24770472 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 55, 92 |
| Conread position: | 685-849 |
| Cow position: | chr19:2994074-2993904 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 144 |
| Conread position: | 691-890 |
| Cow position: | chr19:42499082-42498871 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 39, 195 |
| Conread position: | 697-890 |
| Cow position: | chr19:9097104-9096906 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 33, 134 |
| Conread position: | 729-890 |
| Cow position: | chr19:33440936-33440772 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 30, 101 |
| Conread position: | 733-865 |
| Cow position: | chr19:6093987-6094118 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 68, 23 |
Show alignments to all cow chromosomes.