Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 356-545 |
| Cow position: | chr20:14759924-14759730 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 74 |
| Conread position: | 356-556 |
| Cow position: | chr20:4205702-4205912 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 361-579 |
| Cow position: | chr20:10838474-10838250 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 361-628 |
| Cow position: | chr20:20471534-20471807 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 365-556 |
| Cow position: | chr20:14735426-14735620 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 136, 64 |
| Conread position: | 366-781 |
| Cow position: | chr20:11544704-11544286 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 22 |
| Conread position: | 367-625 |
| Cow position: | chr20:11975356-11975099 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 127 |
| Conread position: | 369-556 |
| Cow position: | chr20:7442371-7442183 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 67, 61 |
| Conread position: | 370-541 |
| Cow position: | chr20:12420867-12420690 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 103, 54 |
| Conread position: | 370-579 |
| Cow position: | chr20:39405522-39405728 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 372-556 |
| Cow position: | chr20:14572600-14572415 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 372-612 |
| Cow position: | chr20:24869272-24869021 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 374-559 |
| Cow position: | chr20:13465276-13465460 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 139, 56 |
| Conread position: | 374-759 |
| Cow position: | chr20:36181423-36181036 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 274 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 51, 223 |
| Conread position: | 380-586 |
| Cow position: | chr20:29844819-29845023 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 380-890 |
| Cow position: | chr20:10576026-10575514 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 24 |
| Conread position: | 382-579 |
| Cow position: | chr20:35897284-35897484 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 383-641 |
| Cow position: | chr20:19667728-19667990 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 383-887 |
| Cow position: | chr20:7933717-7934244 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 388-558 |
| Cow position: | chr20:20557882-20557704 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 391-628 |
| Cow position: | chr20:22920385-22920137 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 392-556 |
| Cow position: | chr20:12996233-12996066 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 109, 93 |
| Conread position: | 392-579 |
| Cow position: | chr20:19238654-19238463 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 15 |
| Conread position: | 393-706 |
| Cow position: | chr20:3426934-3427256 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 74, 107 |
| Conread position: | 394-586 |
| Cow position: | chr20:32578142-32577945 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 81, 107 |
| Conread position: | 395-559 |
| Cow position: | chr20:5025523-5025361 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 396-562 |
| Cow position: | chr20:17669962-17670132 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 397-899 |
| Cow position: | chr20:13817631-13818157 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 398-629 |
| Cow position: | chr20:21767607-21767371 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 398-841 |
| Cow position: | chr20:32583910-32584357 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 73, 33 |
| Conread position: | 399-887 |
| Cow position: | chr20:16788218-16788722 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 400-578 |
| Cow position: | chr20:22235098-22235279 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 400-707 |
| Cow position: | chr20:14403412-14403751 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 405-894 |
| Cow position: | chr20:4875066-4874551 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 24 |
| Conread position: | 406-869 |
| Cow position: | chr20:6869484-6869950 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 311 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 408-889 |
| Cow position: | chr20:8869483-8868962 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 23 |
| Conread position: | 412-890 |
| Cow position: | chr20:22695203-22694729 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 330 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 415-674 |
| Cow position: | chr20:10850702-10850432 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 56, 19 |
| Conread position: | 474-844 |
| Cow position: | chr20:21775781-21776174 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 474-890 |
| Cow position: | chr20:6447130-6446714 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 275 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 9, 50 |
| Conread position: | 545-851 |
| Cow position: | chr20:14990591-14990265 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 52, 7 |
| Conread position: | 579-885 |
| Cow position: | chr20:5470735-5471057 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 581-884 |
| Cow position: | chr20:17205535-17205230 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 581-885 |
| Cow position: | chr20:13023239-13022923 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 7, 257 |
| Conread position: | 586-890 |
| Cow position: | chr20:28021085-28021399 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 88 |
| Conread position: | 593-853 |
| Cow position: | chr20:31488621-31488354 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 9, 199 |
| Conread position: | 605-890 |
| Cow position: | chr20:39200074-39199779 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 33, 229 |
| Conread position: | 619-862 |
| Cow position: | chr20:3157798-3158048 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 630-890 |
| Cow position: | chr20:10061738-10061475 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 636-894 |
| Cow position: | chr20:30703594-30703852 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 97, 26 |
| Conread position: | 670-884 |
| Cow position: | chr20:26724964-26724744 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 156 |
| Conread position: | 671-869 |
| Cow position: | chr20:32347946-32348138 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 672-886 |
| Cow position: | chr20:15901513-15901736 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 58, 135 |
| Conread position: | 672-890 |
| Cow position: | chr20:26687823-26688036 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 54 |
| Conread position: | 673-890 |
| Cow position: | chr20:13252979-13252766 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 675-884 |
| Cow position: | chr20:7213133-7212924 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 676-890 |
| Cow position: | chr20:1374612-1374396 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 698-858 |
| Cow position: | chr20:31311792-31311944 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 699-890 |
| Cow position: | chr20:8038724-8038534 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 699-894 |
| Cow position: | chr20:14403773-14403979 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 128 |
| Conread position: | 725-890 |
| Cow position: | chr20:19865173-19865007 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 102 |
| Conread position: | 756-865 |
| Cow position: | chr20:9079196-9079088 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 757-890 |
| Cow position: | chr20:27407635-27407508 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
Show alignments to all cow chromosomes.