Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 350-541 |
| Cow position: | chr21:24598416-24598610 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 81, 52 |
| Conread position: | 351-466 |
| Cow position: | chr21:28955279-28955392 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 361-547 |
| Cow position: | chr21:45355602-45355792 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 69 |
| Conread position: | 362-451 |
| Cow position: | chr21:46552518-46552430 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 78 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 366-513 |
| Cow position: | chr21:4594826-4594679 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 68 |
| Conread position: | 366-579 |
| Cow position: | chr21:29002391-29002172 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 112, 64 |
| Conread position: | 369-542 |
| Cow position: | chr21:38908346-38908523 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 60 |
| Conread position: | 370-549 |
| Cow position: | chr21:3047461-3047640 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 97, 54 |
| Conread position: | 370-552 |
| Cow position: | chr21:10118328-10118517 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 60 |
| Conread position: | 371-595 |
| Cow position: | chr21:21000250-21000022 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 374-549 |
| Cow position: | chr21:24758848-24759029 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 378-559 |
| Cow position: | chr21:24765067-24765255 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 51 |
| Conread position: | 382-521 |
| Cow position: | chr21:21033402-21033542 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 35 |
| Conread position: | 382-614 |
| Cow position: | chr21:24669199-24669431 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 387-551 |
| Cow position: | chr21:13256596-13256762 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 115 |
| Conread position: | 387-560 |
| Cow position: | chr21:21919633-21919814 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 44 |
| Conread position: | 388-570 |
| Cow position: | chr21:20910298-20910116 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 43 |
| Conread position: | 390-610 |
| Cow position: | chr21:34346802-34347041 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 392-586 |
| Cow position: | chr21:14384033-14384232 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 96, 39 |
| Conread position: | 392-629 |
| Cow position: | chr21:19436320-19436077 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 74, 37 |
| Conread position: | 392-762 |
| Cow position: | chr21:3614156-3614520 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 396-521 |
| Cow position: | chr21:31691278-31691407 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 397-726 |
| Cow position: | chr21:26831815-26832143 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 157, 37 |
| Conread position: | 398-556 |
| Cow position: | chr21:20162338-20162503 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 81, 33 |
| Conread position: | 398-578 |
| Cow position: | chr21:17218813-17218630 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 35 |
| Conread position: | 401-804 |
| Cow position: | chr21:30859179-30859596 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 70, 27 |
| Conread position: | 404-558 |
| Cow position: | chr21:14167878-14168035 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 404-865 |
| Cow position: | chr21:4774992-4775455 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 406-675 |
| Cow position: | chr21:13277108-13277376 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 406-893 |
| Cow position: | chr21:41429875-41430360 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 408-860 |
| Cow position: | chr21:41458626-41458154 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 131 |
| Conread position: | 409-887 |
| Cow position: | chr21:665300-664822 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 433-886 |
| Cow position: | chr21:28624595-28625045 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 314 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 38, 65 |
| Conread position: | 474-890 |
| Cow position: | chr21:20575583-20575151 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 552-886 |
| Cow position: | chr21:7646650-7646302 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 574-890 |
| Cow position: | chr21:3649189-3648879 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 575-869 |
| Cow position: | chr21:13160061-13160368 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 55, 262 |
| Conread position: | 593-813 |
| Cow position: | chr21:12560421-12560186 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 606-865 |
| Cow position: | chr21:26058056-26057787 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 43, 70 |
| Conread position: | 614-895 |
| Cow position: | chr21:41043-41330 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 615-910 |
| Cow position: | chr21:22944783-22945090 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 23, 197 |
| Conread position: | 671-864 |
| Cow position: | chr21:6400352-6400150 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 671-890 |
| Cow position: | chr21:3808427-3808648 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 36 |
| Conread position: | 671-890 |
| Cow position: | chr21:31765730-31765950 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 671-890 |
| Cow position: | chr21:38678165-38678376 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 676-865 |
| Cow position: | chr21:19435823-19435632 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 685-821 |
| Cow position: | chr21:2014185-2014327 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 689-890 |
| Cow position: | chr21:9202908-9203110 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 696-865 |
| Cow position: | chr21:47868516-47868688 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 130 |
| Conread position: | 698-890 |
| Cow position: | chr21:18512319-18512514 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 699-865 |
| Cow position: | chr21:30644839-30644674 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 703-892 |
| Cow position: | chr21:31919724-31919911 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 706-896 |
| Cow position: | chr21:32828280-32828092 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 94 |
| Conread position: | 756-909 |
| Cow position: | chr21:33215767-33215918 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 67 |
Show alignments to all cow chromosomes.