Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 344-549 |
| Cow position: | chr22:9520832-9521037 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 131, 84 |
| Conread position: | 345-466 |
| Cow position: | chr22:24176192-24176071 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 345-556 |
| Cow position: | chr22:35903007-35902801 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 149, 34 |
| Conread position: | 348-555 |
| Cow position: | chr22:19775733-19775534 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 125, 50 |
| Conread position: | 351-634 |
| Cow position: | chr22:16263709-16263996 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 352-556 |
| Cow position: | chr22:26658746-26658953 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 142, 5 |
| Conread position: | 352-588 |
| Cow position: | chr22:22038974-22039206 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 5, 82 |
| Conread position: | 352-595 |
| Cow position: | chr22:838729-838496 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 118, 48 |
| Conread position: | 352-862 |
| Cow position: | chr22:16769048-16768536 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 344 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 5, 90 |
| Conread position: | 356-543 |
| Cow position: | chr22:23854674-23854858 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 76 |
| Conread position: | 357-550 |
| Cow position: | chr22:34750372-34750570 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 358-552 |
| Cow position: | chr22:534189-534390 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 73 |
| Conread position: | 358-556 |
| Cow position: | chr22:25341716-25341919 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 110, 72 |
| Conread position: | 358-577 |
| Cow position: | chr22:22612807-22613028 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 123, 169 |
| Conread position: | 361-549 |
| Cow position: | chr22:44924363-44924168 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 93, 69 |
| Conread position: | 368-637 |
| Cow position: | chr22:23861437-23861161 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 102, 61 |
| Conread position: | 370-543 |
| Cow position: | chr22:17677648-17677828 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 61 |
| Conread position: | 371-864 |
| Cow position: | chr22:6014422-6013917 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 60 |
| Conread position: | 372-628 |
| Cow position: | chr22:845613-845878 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 155, 57 |
| Conread position: | 377-556 |
| Cow position: | chr22:16057416-16057600 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 146, 53 |
| Conread position: | 379-886 |
| Cow position: | chr22:30630790-30631292 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 91, 50 |
| Conread position: | 380-609 |
| Cow position: | chr22:3837507-3837267 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 121, 53 |
| Conread position: | 382-585 |
| Cow position: | chr22:41927626-41927415 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 42 |
| Conread position: | 382-628 |
| Cow position: | chr22:45355106-45355358 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 383-869 |
| Cow position: | chr22:15879344-15879849 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 385-552 |
| Cow position: | chr22:19787956-19787785 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 388-889 |
| Cow position: | chr22:13249783-13250298 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 29 |
| Conread position: | 389-890 |
| Cow position: | chr22:14154976-14154449 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 40 |
| Conread position: | 391-555 |
| Cow position: | chr22:29955270-29955102 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 392-558 |
| Cow position: | chr22:15398848-15398681 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 392-558 |
| Cow position: | chr22:43292172-43291999 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 160 |
| Conread position: | 394-776 |
| Cow position: | chr22:22463243-22463622 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 85 |
| Conread position: | 394-881 |
| Cow position: | chr22:12086648-12086157 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 394-886 |
| Cow position: | chr22:11306101-11306630 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 366 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 75, 36 |
| Conread position: | 396-559 |
| Cow position: | chr22:23798984-23798818 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 398-886 |
| Cow position: | chr22:15372948-15373428 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 254, 22 |
| Conread position: | 400-526 |
| Cow position: | chr22:30176951-30177080 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 400-762 |
| Cow position: | chr22:12774635-12775006 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 400-788 |
| Cow position: | chr22:29821889-29822281 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 400-822 |
| Cow position: | chr22:11752557-11752120 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 67, 23 |
| Conread position: | 404-596 |
| Cow position: | chr22:9723599-9723799 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 404-703 |
| Cow position: | chr22:29575084-29574775 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 404-862 |
| Cow position: | chr22:22967973-22968420 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 317 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 406-659 |
| Cow position: | chr22:40046127-40046388 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 406-892 |
| Cow position: | chr22:36359225-36359737 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 353 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 407-890 |
| Cow position: | chr22:3288502-3288990 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 410-887 |
| Cow position: | chr22:20912502-20912016 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 411-830 |
| Cow position: | chr22:44502839-44502418 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 425-864 |
| Cow position: | chr22:11969187-11968774 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 313 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 58, 43 |
| Conread position: | 538-887 |
| Cow position: | chr22:13997644-13998009 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 290 |
| Conread position: | 587-860 |
| Cow position: | chr22:40745447-40745735 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 10, 237 |
| Conread position: | 593-891 |
| Cow position: | chr22:23228333-23228028 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 596-890 |
| Cow position: | chr22:16104738-16105031 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 6, 223 |
| Conread position: | 601-844 |
| Cow position: | chr22:35236299-35236557 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 77 |
| Conread position: | 621-887 |
| Cow position: | chr22:33603279-33603547 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 671-885 |
| Cow position: | chr22:19736959-19736747 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 57, 70 |
| Conread position: | 671-888 |
| Cow position: | chr22:18843506-18843288 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 671-890 |
| Cow position: | chr22:32529457-32529676 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 671-893 |
| Cow position: | chr22:28138667-28138892 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 97, 133 |
| Conread position: | 702-868 |
| Cow position: | chr22:23345532-23345360 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 127 |
| Conread position: | 725-894 |
| Cow position: | chr22:27452340-27452166 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 5, 98 |
Show alignments to all cow chromosomes.