Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 343-826 |
| Cow position: | chr24:33579132-33579616 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 127, 13 |
| Conread position: | 345-462 |
| Cow position: | chr24:35149956-35150078 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 345-644 |
| Cow position: | chr24:23695229-23694917 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 149, 57 |
| Conread position: | 345-709 |
| Cow position: | chr24:39607892-39607511 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 125, 85 |
| Conread position: | 349-525 |
| Cow position: | chr24:33526656-33526474 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 349-550 |
| Cow position: | chr24:39350540-39350342 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 6 |
| Conread position: | 364-545 |
| Cow position: | chr24:2730889-2730705 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 130, 66 |
| Conread position: | 364-586 |
| Cow position: | chr24:25111883-25112115 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 106, 66 |
| Conread position: | 365-540 |
| Cow position: | chr24:27941325-27941149 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 366-620 |
| Cow position: | chr24:1438586-1438321 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 23, 66 |
| Conread position: | 368-550 |
| Cow position: | chr24:6508078-6507894 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 103, 61 |
| Conread position: | 370-542 |
| Cow position: | chr24:6677189-6677364 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 374-579 |
| Cow position: | chr24:32759079-32758861 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 73, 56 |
| Conread position: | 374-595 |
| Cow position: | chr24:31816276-31816504 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 60 |
| Conread position: | 387-851 |
| Cow position: | chr24:18793170-18793644 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 64, 44 |
| Conread position: | 389-899 |
| Cow position: | chr24:37074915-37074394 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 96 |
| Conread position: | 390-552 |
| Cow position: | chr24:24137144-24136986 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 390-595 |
| Cow position: | chr24:29845563-29845361 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 391-585 |
| Cow position: | chr24:35836530-35836325 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 40 |
| Conread position: | 392-565 |
| Cow position: | chr24:39440849-39440673 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 129, 159 |
| Conread position: | 394-894 |
| Cow position: | chr24:30017843-30017315 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 361 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 62, 37 |
| Conread position: | 395-843 |
| Cow position: | chr24:7030441-7029953 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 395-893 |
| Cow position: | chr24:16101445-16101956 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 347 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 396-647 |
| Cow position: | chr24:32668989-32669248 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 71, 181 |
| Conread position: | 398-890 |
| Cow position: | chr24:36715264-36715749 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 341 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 69, 133 |
| Conread position: | 400-892 |
| Cow position: | chr24:23040423-23040913 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 166 |
| Conread position: | 400-895 |
| Cow position: | chr24:23184319-23183813 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 400-899 |
| Cow position: | chr24:27229328-27228823 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 404-630 |
| Cow position: | chr24:22821734-22821961 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 404-886 |
| Cow position: | chr24:43176219-43176729 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 353 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 63, 38 |
| Conread position: | 406-633 |
| Cow position: | chr24:38002019-38001770 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 61, 228 |
| Conread position: | 407-843 |
| Cow position: | chr24:9175958-9175530 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 290 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 6, 23 |
| Conread position: | 407-869 |
| Cow position: | chr24:41009509-41009974 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 308 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 412-887 |
| Cow position: | chr24:7464681-7464200 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 55, 17 |
| Conread position: | 445-821 |
| Cow position: | chr24:33730615-33731004 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 280 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 448-637 |
| Cow position: | chr24:20506964-20506769 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 73 |
| Conread position: | 479-884 |
| Cow position: | chr24:27884526-27884130 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 282 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 139, 19 |
| Conread position: | 544-886 |
| Cow position: | chr24:16162691-16163039 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 574-888 |
| Cow position: | chr24:16190349-16190671 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 602-890 |
| Cow position: | chr24:29070243-29069951 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 204 |
| Conread position: | 608-873 |
| Cow position: | chr24:2615890-2616153 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 608-887 |
| Cow position: | chr24:16235128-16235409 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 625-868 |
| Cow position: | chr24:31393840-31393590 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 671-851 |
| Cow position: | chr24:18416744-18416562 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 671-869 |
| Cow position: | chr24:25049807-25049599 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 59, 163 |
| Conread position: | 671-890 |
| Cow position: | chr24:23528292-23528073 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 672-863 |
| Cow position: | chr24:44255903-44256103 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 58, 157 |
| Conread position: | 673-844 |
| Cow position: | chr24:17470028-17470201 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 674-864 |
| Cow position: | chr24:10460376-10460571 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 56, 141 |
| Conread position: | 674-887 |
| Cow position: | chr24:27078761-27078974 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 679-869 |
| Cow position: | chr24:24777369-24777559 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 51 |
| Conread position: | 680-865 |
| Cow position: | chr24:29824315-29824130 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 682-894 |
| Cow position: | chr24:36344681-36344451 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 210 |
| Conread position: | 687-897 |
| Cow position: | chr24:31590045-31589834 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 693-893 |
| Cow position: | chr24:30191677-30191881 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 37, 117 |
| Conread position: | 698-844 |
| Cow position: | chr24:5873606-5873460 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 30, 125 |
| Conread position: | 714-890 |
| Cow position: | chr24:3530073-3530252 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 115 |
| Conread position: | 729-892 |
| Cow position: | chr24:31438118-31437955 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 732-895 |
| Cow position: | chr24:21503860-21503701 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 736-871 |
| Cow position: | chr24:32418644-32418504 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 762-890 |
| Cow position: | chr24:38292027-38292151 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.