Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 342-886 |
| Cow position: | chr28:25314885-25315439 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 345-633 |
| Cow position: | chr28:22081272-22081566 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 122, 57 |
| Conread position: | 350-525 |
| Cow position: | chr28:4841696-4841521 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 110, 5 |
| Conread position: | 351-593 |
| Cow position: | chr28:31415725-31415487 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 120, 49 |
| Conread position: | 365-541 |
| Cow position: | chr28:28414382-28414563 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 105, 68 |
| Conread position: | 368-549 |
| Cow position: | chr28:14218760-14218580 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 153, 13 |
| Conread position: | 368-579 |
| Cow position: | chr28:21873487-21873698 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 102, 62 |
| Conread position: | 371-579 |
| Cow position: | chr28:2340251-2340463 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 36 |
| Conread position: | 372-541 |
| Cow position: | chr28:2862580-2862756 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 101, 58 |
| Conread position: | 373-541 |
| Cow position: | chr28:19026283-19026121 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 106, 57 |
| Conread position: | 373-558 |
| Cow position: | chr28:15498498-15498306 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 95, 46 |
| Conread position: | 373-898 |
| Cow position: | chr28:22051487-22052005 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 95 |
| Conread position: | 374-869 |
| Cow position: | chr28:7595654-7595136 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 375-822 |
| Cow position: | chr28:26701588-26701165 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 105, 29 |
| Conread position: | 380-586 |
| Cow position: | chr28:15688768-15688982 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 382-886 |
| Cow position: | chr28:11690469-11689958 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 350 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 87, 22 |
| Conread position: | 384-706 |
| Cow position: | chr28:34636410-34636754 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 19 |
| Conread position: | 385-525 |
| Cow position: | chr28:962581-962724 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 82, 56 |
| Conread position: | 386-890 |
| Cow position: | chr28:28438302-28438825 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 45 |
| Conread position: | 392-578 |
| Cow position: | chr28:11426806-11426613 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 38 |
| Conread position: | 392-579 |
| Cow position: | chr28:13693488-13693679 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 392-595 |
| Cow position: | chr28:11380304-11380085 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 392-700 |
| Cow position: | chr28:4046886-4047201 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 135, 23 |
| Conread position: | 393-886 |
| Cow position: | chr28:757525-757026 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 74, 36 |
| Conread position: | 396-760 |
| Cow position: | chr28:21382468-21382846 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 397-555 |
| Cow position: | chr28:15007905-15008067 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 398-852 |
| Cow position: | chr28:23111679-23112154 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 322 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 399-633 |
| Cow position: | chr28:9442329-9442087 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 58, 155 |
| Conread position: | 401-869 |
| Cow position: | chr28:25945922-25945465 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 304 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 404-602 |
| Cow position: | chr28:16475746-16475947 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 66, 25 |
| Conread position: | 404-647 |
| Cow position: | chr28:6507935-6508183 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 404-731 |
| Cow position: | chr28:13936167-13936510 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 404-885 |
| Cow position: | chr28:25306699-25307229 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 362 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 21, 343 |
| Conread position: | 406-560 |
| Cow position: | chr28:22583385-22583545 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 406-631 |
| Cow position: | chr28:25596385-25596618 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 407-894 |
| Cow position: | chr28:3802946-3803434 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 342 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 409-737 |
| Cow position: | chr28:13902203-13901856 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 22 |
| Conread position: | 412-595 |
| Cow position: | chr28:10456763-10456575 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 422-910 |
| Cow position: | chr28:4375417-4374900 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 302 |
| Conread position: | 426-869 |
| Cow position: | chr28:21118576-21118136 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 54, 69 |
| Conread position: | 474-889 |
| Cow position: | chr28:20252094-20252507 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 6, 62 |
| Conread position: | 501-833 |
| Cow position: | chr28:11783866-11783517 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 605-843 |
| Cow position: | chr28:10163171-10163409 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 125, 25 |
| Conread position: | 606-890 |
| Cow position: | chr28:978586-978293 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 33, 229 |
| Conread position: | 608-865 |
| Cow position: | chr28:12226268-12225993 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 233 |
| Conread position: | 612-890 |
| Cow position: | chr28:22202110-22202393 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 27, 136 |
| Conread position: | 671-845 |
| Cow position: | chr28:3140067-3140243 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 35, 141 |
| Conread position: | 671-868 |
| Cow position: | chr28:6871300-6871495 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 82 |
| Conread position: | 671-869 |
| Cow position: | chr28:2577328-2577529 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 84, 54 |
| Conread position: | 671-886 |
| Cow position: | chr28:10574247-10574032 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 671-890 |
| Cow position: | chr28:21941735-21941514 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 158 |
| Conread position: | 671-892 |
| Cow position: | chr28:31339337-31339110 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 673-859 |
| Cow position: | chr28:24330423-24330236 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 57, 150 |
| Conread position: | 674-890 |
| Cow position: | chr28:27111234-27111454 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 156 |
| Conread position: | 675-885 |
| Cow position: | chr28:21355622-21355820 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 55 |
| Conread position: | 685-865 |
| Cow position: | chr28:10971447-10971634 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 45, 35 |
| Conread position: | 685-897 |
| Cow position: | chr28:5158389-5158607 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 687-885 |
| Cow position: | chr28:4404039-4404238 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 688-869 |
| Cow position: | chr28:6508262-6508450 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 127 |
| Conread position: | 697-866 |
| Cow position: | chr28:30967766-30967931 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 718-869 |
| Cow position: | chr28:15993642-15993792 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 729-887 |
| Cow position: | chr28:3818259-3818097 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 147 |
| Conread position: | 733-861 |
| Cow position: | chr28:4047621-4047752 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 743-865 |
| Cow position: | chr28:26534540-26534663 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 83 |
Show alignments to all cow chromosomes.