Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 345-531 |
| Cow position: | chr29:41076343-41076153 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 134, 85 |
| Conread position: | 345-540 |
| Cow position: | chr29:31156505-31156305 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 81 |
| Conread position: | 345-550 |
| Cow position: | chr29:13129905-13130117 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 345-886 |
| Cow position: | chr29:33009501-33010063 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 362 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 348-559 |
| Cow position: | chr29:16662775-16662986 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 119, 31 |
| Conread position: | 350-586 |
| Cow position: | chr29:30812441-30812683 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 112, 5 |
| Conread position: | 356-541 |
| Cow position: | chr29:2626226-2626043 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 165, 59 |
| Conread position: | 356-545 |
| Cow position: | chr29:2316754-2316942 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 74 |
| Conread position: | 356-579 |
| Cow position: | chr29:477799-478028 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 356-829 |
| Cow position: | chr29:29615183-29614710 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 64 |
| Conread position: | 358-544 |
| Cow position: | chr29:16195550-16195736 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 120, 65 |
| Conread position: | 358-550 |
| Cow position: | chr29:21924908-21925103 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 71 |
| Conread position: | 358-595 |
| Cow position: | chr29:2885749-2885510 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 112, 72 |
| Conread position: | 368-559 |
| Cow position: | chr29:94837-94654 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 133, 62 |
| Conread position: | 370-546 |
| Cow position: | chr29:109422-109596 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 131, 14 |
| Conread position: | 371-559 |
| Cow position: | chr29:18521314-18521121 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 376-609 |
| Cow position: | chr29:9938351-9938119 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 94, 36 |
| Conread position: | 377-554 |
| Cow position: | chr29:21933396-21933217 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 90, 53 |
| Conread position: | 378-595 |
| Cow position: | chr29:32655706-32655482 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 380-579 |
| Cow position: | chr29:23569153-23568950 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 143, 99 |
| Conread position: | 380-703 |
| Cow position: | chr29:17965677-17966042 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 80, 106 |
| Conread position: | 381-552 |
| Cow position: | chr29:26129220-26129394 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 94, 48 |
| Conread position: | 382-635 |
| Cow position: | chr29:22339491-22339237 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 18 |
| Conread position: | 384-766 |
| Cow position: | chr29:22332762-22332373 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 275 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 385-551 |
| Cow position: | chr29:23743312-23743155 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 388-633 |
| Cow position: | chr29:25088481-25088727 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 43 |
| Conread position: | 388-891 |
| Cow position: | chr29:27123612-27123111 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 41 |
| Conread position: | 390-579 |
| Cow position: | chr29:2522308-2522493 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 40 |
| Conread position: | 390-864 |
| Cow position: | chr29:19601607-19601116 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 390-890 |
| Cow position: | chr29:26224077-26224595 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 41 |
| Conread position: | 392-559 |
| Cow position: | chr29:17373-17205 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 392-579 |
| Cow position: | chr29:18338814-18338620 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 39 |
| Conread position: | 392-642 |
| Cow position: | chr29:28280798-28280548 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 394-706 |
| Cow position: | chr29:32809194-32809520 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 77, 37 |
| Conread position: | 396-909 |
| Cow position: | chr29:7750138-7749597 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 398-619 |
| Cow position: | chr29:37452039-37452258 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 398-890 |
| Cow position: | chr29:4755265-4754788 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 339 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 82, 6 |
| Conread position: | 400-647 |
| Cow position: | chr29:22948922-22948670 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 400-841 |
| Cow position: | chr29:36541515-36541961 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 404-583 |
| Cow position: | chr29:15758180-15758370 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 30 |
| Conread position: | 404-849 |
| Cow position: | chr29:14191135-14190691 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 310 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 67, 24 |
| Conread position: | 406-886 |
| Cow position: | chr29:7828726-7828192 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 363 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 410-821 |
| Cow position: | chr29:7959764-7959319 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 412-869 |
| Cow position: | chr29:35112225-35111760 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 412-886 |
| Cow position: | chr29:13608872-13608394 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 518-886 |
| Cow position: | chr29:16153422-16153787 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 111, 26 |
| Conread position: | 541-886 |
| Cow position: | chr29:34683384-34683020 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 11 |
| Conread position: | 554-890 |
| Cow position: | chr29:24778975-24778632 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 227 |
| Conread position: | 597-890 |
| Cow position: | chr29:25681193-25680903 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 609-839 |
| Cow position: | chr29:15919833-15920075 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 613-885 |
| Cow position: | chr29:26250490-26250773 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 25, 273 |
| Conread position: | 671-868 |
| Cow position: | chr29:34848931-34849130 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 671-917 |
| Cow position: | chr29:15562984-15562727 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 117 |
| Conread position: | 674-841 |
| Cow position: | chr29:7971309-7971140 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 127 |
| Conread position: | 677-842 |
| Cow position: | chr29:19751389-19751551 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 53, 11 |
| Conread position: | 684-890 |
| Cow position: | chr29:28653186-28653389 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 46, 96 |
| Conread position: | 686-865 |
| Cow position: | chr29:36100800-36100982 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 41, 137 |
| Conread position: | 732-887 |
| Cow position: | chr29:4335102-4334947 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 753-865 |
| Cow position: | chr29:18540905-18540794 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
Show alignments to all cow chromosomes.