Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 342-545 |
| Cow position: | chr3:17957130-17957328 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 179, 14 |
| Conread position: | 345-574 |
| Cow position: | chr3:45744377-45744614 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 345-625 |
| Cow position: | chr3:48629921-48629632 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 125, 57 |
| Conread position: | 345-726 |
| Cow position: | chr3:16886218-16885820 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 278 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 12, 86 |
| Conread position: | 345-804 |
| Cow position: | chr3:42914120-42914594 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 55 |
| Conread position: | 349-556 |
| Cow position: | chr3:39171816-39171605 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 130, 6 |
| Conread position: | 350-890 |
| Cow position: | chr3:33468811-33468249 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 351-659 |
| Cow position: | chr3:53510018-53509686 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 352-542 |
| Cow position: | chr3:23471799-23471600 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 161 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 356-557 |
| Cow position: | chr3:15158715-15158920 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 145, 74 |
| Conread position: | 356-566 |
| Cow position: | chr3:54740197-54739983 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 357-756 |
| Cow position: | chr3:62648698-62648313 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 266 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 358-445 |
| Cow position: | chr3:59333451-59333538 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 79 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-579 |
| Cow position: | chr3:77467608-77467835 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 217 |
| Conread position: | 358-703 |
| Cow position: | chr3:56686025-56686375 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 107, 71 |
| Conread position: | 362-541 |
| Cow position: | chr3:56689-56513 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 139, 66 |
| Conread position: | 364-550 |
| Cow position: | chr3:17895536-17895718 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 109, 66 |
| Conread position: | 365-559 |
| Cow position: | chr3:65581333-65581135 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 101, 65 |
| Conread position: | 366-544 |
| Cow position: | chr3:32869833-32870013 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 102, 64 |
| Conread position: | 367-535 |
| Cow position: | chr3:78894629-78894471 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 367-888 |
| Cow position: | chr3:37289545-37288997 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 353 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 368-559 |
| Cow position: | chr3:63179554-63179739 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 368-559 |
| Cow position: | chr3:74699709-74699515 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 99, 62 |
| Conread position: | 370-546 |
| Cow position: | chr3:13330084-13329910 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 59 |
| Conread position: | 370-672 |
| Cow position: | chr3:48094204-48093901 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 143 |
| Conread position: | 371-551 |
| Cow position: | chr3:78946150-78945960 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 89 |
| Conread position: | 372-545 |
| Cow position: | chr3:5096893-5097069 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 105, 141 |
| Conread position: | 372-633 |
| Cow position: | chr3:60855148-60854873 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 372-788 |
| Cow position: | chr3:19822276-19821873 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 95, 58 |
| Conread position: | 372-832 |
| Cow position: | chr3:26532101-26531652 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 332 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 225, 8 |
| Conread position: | 374-530 |
| Cow position: | chr3:52816441-52816594 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 374-559 |
| Cow position: | chr3:43007714-43007515 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 374-559 |
| Cow position: | chr3:58540838-58540651 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 377-559 |
| Cow position: | chr3:44861613-44861427 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 93, 53 |
| Conread position: | 377-890 |
| Cow position: | chr3:13478215-13478746 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 369 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 150, 9 |
| Conread position: | 378-541 |
| Cow position: | chr3:39970176-39970006 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 97, 53 |
| Conread position: | 378-550 |
| Cow position: | chr3:23944793-23944970 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 378-550 |
| Cow position: | chr3:55815040-55815211 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 89, 52 |
| Conread position: | 378-556 |
| Cow position: | chr3:65413579-65413402 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 103, 51 |
| Conread position: | 378-830 |
| Cow position: | chr3:52484319-52484775 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 93, 75 |
| Conread position: | 379-550 |
| Cow position: | chr3:71104540-71104716 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 88, 50 |
| Conread position: | 380-562 |
| Cow position: | chr3:17937141-17936951 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 51 |
| Conread position: | 380-740 |
| Cow position: | chr3:73936193-73935821 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 30, 104 |
| Conread position: | 381-525 |
| Cow position: | chr3:49784010-49784153 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 382-633 |
| Cow position: | chr3:73236470-73236732 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 386-890 |
| Cow position: | chr3:63199207-63199725 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 34 |
| Conread position: | 387-525 |
| Cow position: | chr3:17680867-17681008 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 88, 42 |
| Conread position: | 387-726 |
| Cow position: | chr3:7786975-7786613 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 9 |
| Conread position: | 388-566 |
| Cow position: | chr3:45647383-45647567 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 23 |
| Conread position: | 388-741 |
| Cow position: | chr3:72927047-72926702 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 389-541 |
| Cow position: | chr3:70895753-70895912 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 42 |
| Conread position: | 390-559 |
| Cow position: | chr3:82165927-82165757 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 390-679 |
| Cow position: | chr3:51813785-51813498 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 81, 39 |
| Conread position: | 390-842 |
| Cow position: | chr3:71515106-71514646 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 392-579 |
| Cow position: | chr3:53150037-53150227 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 38 |
| Conread position: | 392-579 |
| Cow position: | chr3:72675797-72675991 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 87, 39 |
| Conread position: | 392-607 |
| Cow position: | chr3:202724-202501 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 38 |
| Conread position: | 392-691 |
| Cow position: | chr3:15571367-15571686 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 88, 39 |
| Conread position: | 392-828 |
| Cow position: | chr3:58954010-58954473 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 321 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 80, 36 |
| Conread position: | 392-869 |
| Cow position: | chr3:34953364-34953864 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 394-556 |
| Cow position: | chr3:82460895-82461056 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 100 |
| Conread position: | 394-899 |
| Cow position: | chr3:26474871-26475394 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 395-665 |
| Cow position: | chr3:3096634-3096372 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 132, 36 |
| Conread position: | 395-857 |
| Cow position: | chr3:10215298-10214842 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 292 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 35 |
| Conread position: | 396-850 |
| Cow position: | chr3:54789689-54790165 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 333 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 396-915 |
| Cow position: | chr3:40231643-40232161 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 35 |
| Conread position: | 397-890 |
| Cow position: | chr3:41315999-41316482 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 398-645 |
| Cow position: | chr3:41947405-41947147 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 399-579 |
| Cow position: | chr3:62883919-62884104 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 38, 32 |
| Conread position: | 400-545 |
| Cow position: | chr3:53384565-53384418 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 127, 31 |
| Conread position: | 400-552 |
| Cow position: | chr3:53588672-53588516 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 31 |
| Conread position: | 400-564 |
| Cow position: | chr3:19789401-19789232 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 31 |
| Conread position: | 400-675 |
| Cow position: | chr3:72530897-72531196 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 175 |
| Conread position: | 400-757 |
| Cow position: | chr3:35029381-35029021 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 188 |
| Conread position: | 400-838 |
| Cow position: | chr3:54909282-54909711 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 400-865 |
| Cow position: | chr3:1498588-1499083 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 31 |
| Conread position: | 400-869 |
| Cow position: | chr3:54570367-54570834 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 31 |
| Conread position: | 400-886 |
| Cow position: | chr3:24823692-24824209 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 360 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 401-556 |
| Cow position: | chr3:83920917-83921081 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 401-579 |
| Cow position: | chr3:55460782-55460596 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 401-893 |
| Cow position: | chr3:16622309-16621796 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 404-594 |
| Cow position: | chr3:24276429-24276624 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 404-849 |
| Cow position: | chr3:40753876-40754339 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 404-886 |
| Cow position: | chr3:41818368-41817894 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 406-723 |
| Cow position: | chr3:56125471-56125809 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 406-890 |
| Cow position: | chr3:36729412-36729899 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 407-890 |
| Cow position: | chr3:69895325-69894852 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 314 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 98, 24 |
| Conread position: | 408-839 |
| Cow position: | chr3:15557694-15558147 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 408-869 |
| Cow position: | chr3:7136707-7136240 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 59, 23 |
| Conread position: | 408-890 |
| Cow position: | chr3:1750196-1750676 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 408-890 |
| Cow position: | chr3:13259727-13259258 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 414-869 |
| Cow position: | chr3:79139249-79138787 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 310 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 419-862 |
| Cow position: | chr3:26888565-26888114 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 50, 85 |
| Conread position: | 426-884 |
| Cow position: | chr3:48857825-48858290 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 48 |
| Conread position: | 430-894 |
| Cow position: | chr3:24261949-24261473 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 60 |
| Conread position: | 439-762 |
| Cow position: | chr3:4555896-4555557 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 445-886 |
| Cow position: | chr3:55896685-55897159 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 154, 34 |
| Conread position: | 454-890 |
| Cow position: | chr3:63259725-63260150 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 479-869 |
| Cow position: | chr3:75163413-75163009 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 48, 135 |
| Conread position: | 479-887 |
| Cow position: | chr3:16170216-16169796 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 481-863 |
| Cow position: | chr3:79154210-79153842 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 137, 18 |
| Conread position: | 481-904 |
| Cow position: | chr3:67927013-67927465 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 369 |
| Conread position: | 529-890 |
| Cow position: | chr3:22850847-22850464 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 189 |
| Conread position: | 533-845 |
| Cow position: | chr3:40269395-40269069 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 9, 32 |
| Conread position: | 561-887 |
| Cow position: | chr3:56499818-56500137 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 77, 35 |
| Conread position: | 564-894 |
| Cow position: | chr3:74761102-74761468 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 20, 188 |
| Conread position: | 588-833 |
| Cow position: | chr3:49841285-49841026 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 40, 249 |
| Conread position: | 595-887 |
| Cow position: | chr3:45435085-45435386 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 241 |
| Conread position: | 600-890 |
| Cow position: | chr3:50358763-50358483 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 7, 55 |
| Conread position: | 603-793 |
| Cow position: | chr3:11072031-11071839 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 128 |
| Conread position: | 603-865 |
| Cow position: | chr3:54051626-54051368 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 603-895 |
| Cow position: | chr3:15329490-15329178 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 233 |
| Conread position: | 607-865 |
| Cow position: | chr3:40736684-40736418 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 607-908 |
| Cow position: | chr3:35144743-35145049 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 131 |
| Conread position: | 614-846 |
| Cow position: | chr3:56565391-56565636 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 23, 185 |
| Conread position: | 614-894 |
| Cow position: | chr3:54554389-54554673 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 24, 155 |
| Conread position: | 629-894 |
| Cow position: | chr3:80123432-80123159 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 19, 42 |
| Conread position: | 630-893 |
| Cow position: | chr3:77065526-77065258 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 630-893 |
| Cow position: | chr3:77067449-77067181 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 671-819 |
| Cow position: | chr3:5986263-5986113 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 59, 134 |
| Conread position: | 671-869 |
| Cow position: | chr3:22866685-22866480 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 671-869 |
| Cow position: | chr3:64435817-64435615 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 148 |
| Conread position: | 671-886 |
| Cow position: | chr3:3095797-3095586 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 671-887 |
| Cow position: | chr3:7942187-7941977 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 671-887 |
| Cow position: | chr3:66945117-66944897 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 57, 159 |
| Conread position: | 671-888 |
| Cow position: | chr3:76928279-76928487 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 55, 122 |
| Conread position: | 671-890 |
| Cow position: | chr3:19559926-19559707 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 57, 156 |
| Conread position: | 671-890 |
| Cow position: | chr3:41946877-41946660 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 671-890 |
| Cow position: | chr3:55005230-55005445 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 671-890 |
| Cow position: | chr3:62560981-62561209 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 159 |
| Conread position: | 671-899 |
| Cow position: | chr3:84881425-84881189 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 89, 57 |
| Conread position: | 672-864 |
| Cow position: | chr3:20713776-20713968 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 56, 52 |
| Conread position: | 673-862 |
| Cow position: | chr3:76381227-76381043 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 34 |
| Conread position: | 673-871 |
| Cow position: | chr3:41402360-41402567 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 60, 157 |
| Conread position: | 674-861 |
| Cow position: | chr3:61243996-61244195 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 161 |
| Conread position: | 676-865 |
| Cow position: | chr3:38690993-38690802 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 57, 149 |
| Conread position: | 676-890 |
| Cow position: | chr3:1670589-1670378 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 127 |
| Conread position: | 679-890 |
| Cow position: | chr3:17681509-17681707 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 51, 86 |
| Conread position: | 680-865 |
| Cow position: | chr3:69467428-69467613 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 141 |
| Conread position: | 689-890 |
| Cow position: | chr3:45343352-45343556 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 45, 140 |
| Conread position: | 690-919 |
| Cow position: | chr3:24783739-24783980 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 6, 44 |
| Conread position: | 700-882 |
| Cow position: | chr3:47117187-47117373 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 30, 126 |
| Conread position: | 700-889 |
| Cow position: | chr3:18579283-18579472 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 718-900 |
| Cow position: | chr3:49784860-49785048 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 95 |
| Conread position: | 724-890 |
| Cow position: | chr3:12852677-12852514 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 729-890 |
| Cow position: | chr3:72550315-72550479 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 732-897 |
| Cow position: | chr3:40886340-40886505 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 734-870 |
| Cow position: | chr3:16885560-16885426 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 756-893 |
| Cow position: | chr3:18447570-18447701 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
Show alignments to all cow chromosomes.