Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8050B18.3 |
| Conread position: | 300-703 |
| Cow position: | chr9:11744007-11743620 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 271 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 134, 56 |
| Conread position: | 347-541 |
| Cow position: | chr9:20091381-20091185 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 85 |
| Conread position: | 350-552 |
| Cow position: | chr9:35305783-35305983 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 135, 52 |
| Conread position: | 351-530 |
| Cow position: | chr9:35745657-35745481 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 116, 52 |
| Conread position: | 356-544 |
| Cow position: | chr9:5400051-5399860 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 83 |
| Conread position: | 356-550 |
| Cow position: | chr9:15054212-15054011 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 39, 70 |
| Conread position: | 357-556 |
| Cow position: | chr9:52578202-52578409 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 110, 73 |
| Conread position: | 358-890 |
| Cow position: | chr9:32688485-32689023 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 362-559 |
| Cow position: | chr9:47875622-47875821 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 109, 68 |
| Conread position: | 364-556 |
| Cow position: | chr9:36999737-36999934 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 157, 66 |
| Conread position: | 366-560 |
| Cow position: | chr9:9325264-9325061 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 103, 67 |
| Conread position: | 368-579 |
| Cow position: | chr9:55365209-55364986 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 62 |
| Conread position: | 368-865 |
| Cow position: | chr9:35224939-35224437 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 67 |
| Conread position: | 370-556 |
| Cow position: | chr9:30138443-30138256 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 131, 59 |
| Conread position: | 371-521 |
| Cow position: | chr9:27291928-27292080 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 374-556 |
| Cow position: | chr9:49764970-49764784 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 99, 56 |
| Conread position: | 374-595 |
| Cow position: | chr9:26278863-26279095 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 105, 39 |
| Conread position: | 374-643 |
| Cow position: | chr9:26124511-26124770 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 93, 62 |
| Conread position: | 375-585 |
| Cow position: | chr9:40060014-40060230 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 34 |
| Conread position: | 376-554 |
| Cow position: | chr9:58674053-58673867 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 54 |
| Conread position: | 378-550 |
| Cow position: | chr9:51929012-51928831 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 378-632 |
| Cow position: | chr9:33669017-33668766 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 380-552 |
| Cow position: | chr9:34093118-34093295 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 51 |
| Conread position: | 380-763 |
| Cow position: | chr9:50689752-50690137 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 100, 9 |
| Conread position: | 382-728 |
| Cow position: | chr9:56022842-56023200 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 37 |
| Conread position: | 384-560 |
| Cow position: | chr9:21674681-21674865 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 384-658 |
| Cow position: | chr9:49689241-49688958 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 110, 101 |
| Conread position: | 384-860 |
| Cow position: | chr9:33078025-33078507 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 130, 52 |
| Conread position: | 385-586 |
| Cow position: | chr9:34762550-34762749 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 386-552 |
| Cow position: | chr9:1950220-1950051 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 31 |
| Conread position: | 386-647 |
| Cow position: | chr9:24904779-24904521 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 390-556 |
| Cow position: | chr9:25958711-25958545 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 89, 39 |
| Conread position: | 391-554 |
| Cow position: | chr9:5763333-5763501 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 88, 40 |
| Conread position: | 391-578 |
| Cow position: | chr9:10761053-10761242 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 160 |
| Conread position: | 392-595 |
| Cow position: | chr9:4284974-4285187 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 392-870 |
| Cow position: | chr9:10355263-10355757 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 346 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 77, 38 |
| Conread position: | 396-907 |
| Cow position: | chr9:9556600-9556086 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 38 |
| Conread position: | 397-873 |
| Cow position: | chr9:38878156-38877696 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 310 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 398-675 |
| Cow position: | chr9:44517848-44517559 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 400-578 |
| Cow position: | chr9:62131890-62132071 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 148 |
| Conread position: | 400-579 |
| Cow position: | chr9:5621742-5621928 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 31 |
| Conread position: | 400-887 |
| Cow position: | chr9:55262295-55262779 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 29 |
| Conread position: | 404-675 |
| Cow position: | chr9:11286036-11285760 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 404-869 |
| Cow position: | chr9:40860013-40859559 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 408-1056 |
| Cow position: | chr9:10149782-10150418 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 412-804 |
| Cow position: | chr9:22398436-22398022 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 8 |
| Conread position: | 419-865 |
| Cow position: | chr9:16252779-16253217 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 445-739 |
| Cow position: | chr9:15483096-15483394 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 32 |
| Conread position: | 455-887 |
| Cow position: | chr9:15964972-15965422 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 300 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 109 |
| Conread position: | 474-886 |
| Cow position: | chr9:15937041-15936629 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 289 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 479-704 |
| Cow position: | chr9:31968675-31968904 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 53 |
| Conread position: | 482-868 |
| Cow position: | chr9:41904332-41903929 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 46, 237 |
| Conread position: | 586-863 |
| Cow position: | chr9:26353126-26353422 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 256 |
| Conread position: | 596-873 |
| Cow position: | chr9:62757411-62757126 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 602-896 |
| Cow position: | chr9:10310896-10311205 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 47, 9 |
| Conread position: | 605-890 |
| Cow position: | chr9:39647074-39646778 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 32, 9 |
| Conread position: | 608-894 |
| Cow position: | chr9:12890255-12889964 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 30, 201 |
| Conread position: | 609-904 |
| Cow position: | chr9:23596353-23596064 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 28, 125 |
| Conread position: | 645-848 |
| Cow position: | chr9:58655083-58654875 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 183 |
| Conread position: | 670-854 |
| Cow position: | chr9:53532100-53532287 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 157 |
| Conread position: | 670-868 |
| Cow position: | chr9:59588509-59588309 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 89, 137 |
| Conread position: | 671-884 |
| Cow position: | chr9:15962260-15962485 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 158 |
| Conread position: | 671-884 |
| Cow position: | chr9:47447740-47447518 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 79 |
| Conread position: | 671-890 |
| Cow position: | chr9:20700258-20700041 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 128 |
| Conread position: | 671-893 |
| Cow position: | chr9:4721235-4721465 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 127 |
| Conread position: | 671-913 |
| Cow position: | chr9:39236484-39236730 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 673-885 |
| Cow position: | chr9:38350273-38350051 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 57, 155 |
| Conread position: | 673-895 |
| Cow position: | chr9:9784409-9784639 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 675-862 |
| Cow position: | chr9:9548149-9548337 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 151 |
| Conread position: | 675-890 |
| Cow position: | chr9:3204143-3203925 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 55, 155 |
| Conread position: | 675-890 |
| Cow position: | chr9:54717289-54717501 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 685-821 |
| Cow position: | chr9:23740765-23740625 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 45, 108 |
| Conread position: | 686-894 |
| Cow position: | chr9:47022472-47022687 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 49, 125 |
| Conread position: | 696-890 |
| Cow position: | chr9:31968921-31969116 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 94 |
| Conread position: | 705-894 |
| Cow position: | chr9:51159697-51159497 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 123 |
| Conread position: | 710-862 |
| Cow position: | chr9:47073708-47073862 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 715-920 |
| Cow position: | chr9:34937530-34937324 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 728-889 |
| Cow position: | chr9:24998085-24998250 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 753-894 |
| Cow position: | chr9:1976865-1977009 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 110, 19 |
Show alignments to all cow chromosomes.