Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8051E06.3 |
| Conread position: | 110-405 |
| Cow position: | chr14:3155530-3155824 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 275, 11 |
| Conread position: | 112-414 |
| Cow position: | chr14:3079968-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-415 |
| Cow position: | chr14:3080808-3080505 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-418 |
| Cow position: | chr14:25895404-25895710 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-427 |
| Cow position: | chr14:433932-434247 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 112-427 |
| Cow position: | chr14:680597-680912 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 38 |
| Conread position: | 112-427 |
| Cow position: | chr14:680933-681248 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 163, 174 |
| Conread position: | 112-435 |
| Cow position: | chr14:3080472-3080149 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 276, 280 |
| Conread position: | 112-470 |
| Cow position: | chr14:680429-680791 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 199, 208 |
| Conread position: | 117-406 |
| Cow position: | chr14:3080131-3079842 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 118-416 |
| Cow position: | chr14:3080718-3080420 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 118-427 |
| Cow position: | chr14:3080634-3080325 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 119-406 |
| Cow position: | chr14:3156027-3156314 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-359 |
| Cow position: | chr14:25836265-25836500 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-414 |
| Cow position: | chr14:680525-680815 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 102, 112 |
| Conread position: | 124-415 |
| Cow position: | chr14:3127804-3127515 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 173, 190 |
| Conread position: | 124-424 |
| Cow position: | chr14:25794796-25794496 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 124-427 |
| Cow position: | chr14:680693-680996 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 124-427 |
| Cow position: | chr14:3127888-3127585 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 153, 161 |
| Conread position: | 124-470 |
| Cow position: | chr14:3156116-3156466 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 125-423 |
| Cow position: | chr14:25894997-25895295 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 99, 81 |
| Conread position: | 126-283 |
| Cow position: | chr14:3100533-3100376 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-366 |
| Cow position: | chr14:3101199-3100963 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 128-406 |
| Cow position: | chr14:3156204-3156482 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-424 |
| Cow position: | chr14:3080372-3080076 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-366 |
| Cow position: | chr14:3061182-3060945 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-404 |
| Cow position: | chr14:25860499-25860774 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 145, 152 |
| Conread position: | 129-405 |
| Cow position: | chr14:3127547-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-406 |
| Cow position: | chr14:3100866-3100589 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 181, 151 |
| Conread position: | 129-423 |
| Cow position: | chr14:3127967-3127673 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-427 |
| Cow position: | chr14:3061098-3060800 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 129-435 |
| Cow position: | chr14:447728-448034 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 258, 263 |
| Conread position: | 130-286 |
| Cow position: | chr14:681119-681275 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-405 |
| Cow position: | chr14:680783-681058 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-406 |
| Cow position: | chr14:3080034-3079758 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-415 |
| Cow position: | chr14:3127714-3127431 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 130-427 |
| Cow position: | chr14:3061601-3061304 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-427 |
| Cow position: | chr14:3101363-3101067 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 148, 31 |
| Conread position: | 130-427 |
| Cow position: | chr14:3128050-3127753 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-416 |
| Cow position: | chr14:447646-447931 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 135-423 |
| Cow position: | chr14:25836528-25836816 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 249, 257 |
| Conread position: | 138-366 |
| Cow position: | chr14:25836615-25836843 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-367 |
| Cow position: | chr14:3100604-3100376 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 139-406 |
| Cow position: | chr14:3155474-3155741 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 139-416 |
| Cow position: | chr14:3127621-3127344 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 253 |
| Conread position: | 140-373 |
| Cow position: | chr14:3101270-3101038 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 145-404 |
| Cow position: | chr14:3101016-3100759 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 145-406 |
| Cow position: | chr14:3061670-3061409 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 132, 166 |
| Conread position: | 145-416 |
| Cow position: | chr14:447912-448183 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-427 |
| Cow position: | chr14:447576-447858 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 145-427 |
| Cow position: | chr14:680882-681164 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 130, 141 |
| Conread position: | 145-432 |
| Cow position: | chr14:447828-448114 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 145-432 |
| Cow position: | chr14:3080523-3080237 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 146-411 |
| Cow position: | chr14:3060913-3060648 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 146-414 |
| Cow position: | chr14:434134-434402 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 146-425 |
| Cow position: | chr14:3061333-3061054 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 146-427 |
| Cow position: | chr14:3061249-3060968 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 148-406 |
| Cow position: | chr14:3080268-3080010 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 239, 244 |
| Conread position: | 148-470 |
| Cow position: | chr14:433884-434210 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 149-366 |
| Cow position: | chr14:25895777-25895994 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-423 |
| Cow position: | chr14:25860015-25860289 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 149-438 |
| Cow position: | chr14:3100678-3100387 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 127, 147 |
| Conread position: | 150-416 |
| Cow position: | chr14:3080854-3080588 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-416 |
| Cow position: | chr14:3128113-3127848 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-427 |
| Cow position: | chr14:3080937-3080661 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-427 |
| Cow position: | chr14:3155975-3156251 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 151-434 |
| Cow position: | chr14:680384-680667 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 151-470 |
| Cow position: | chr14:3080181-3079858 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 273, 0 |
| Conread position: | 157-427 |
| Cow position: | chr14:3061742-3061472 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 229, 235 |
| Conread position: | 157-435 |
| Cow position: | chr14:3155408-3155686 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 157 |
| Conread position: | 157-453 |
| Cow position: | chr14:680306-680606 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 160-427 |
| Cow position: | chr14:3155900-3156167 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 111, 132 |
| Conread position: | 165-424 |
| Cow position: | chr14:447512-447771 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 248, 243 |
| Conread position: | 184-416 |
| Cow position: | chr14:3128164-3127932 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.